FvH4_7g19100

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012118
Physical Location & Seq
Reverse (-)
15853498 .. 15853943
446 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19100.t1

Sequence Viewer

Length: 279 bp
ATGGAGGAGCAGAGTGCCTCCTCTCTCCTCTGCATGCCACGCGCCACGTGCGAAGTCATCCGCCTCCGCGACGATGCCGTTTCGCTCCGCTCCGCCGTGACATCAATCCTCGACAAGCTCAAGAAGGCCGAGGGATTGTCAGCTGAGTCTATAATGGCGCTTGCGAAGTATGATATAGTGAACCAGAGAATGGAAGCTGCATATGAAACGTTACAGGATGCTGCTGGATTAACTCAACTGAGCTCGACTGTGGAGGACGTCGAGAAAAAGAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG7

Protein Analysis

93

Amino Acids

10.08

Weight (kDa)

4.83

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG7 PF10191 1 - 92 4.7e-25 Golgi complex component 7 (COG7)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012118)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51430
fragaria_vesca FvH4_7g19100 FvH4_7g27490
malus_domestica MD01G1182800.v1.1 MD07G1253700.v1.1
prunus_persica Prupe.2G277000_v2.0.a1
pyrus_communis pycom01g19300 pycom07g22640
rosa_chinensis RchiOBHm_Chr1g0374281
rosa_laevigata RLG00000026746
rosa_multiflora Rmu_ssc0000007.1_g000022
rosa_roxburghii Rroxscaffold_4G00283580
rosa_rugosa Rorug01G0382700
rosa_samantha Rh1AG393300 Rh1CG370500 Rh1CG371100 Rh1DG387900 Rh1DG388500
rosa_wichuraiana Rw1G034080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AccB7I CCANNNNNTGG 1 cut(s) 190
AccBSI CCGCTC 1 cut(s) 90
AccII CGCG 2 cut(s) 42, 69
AciI CCGC 4 cut(s) 61, 67, 88, 93
AclI AACGTT 1 cut(s) 209
AcvI CACGTG 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 190
AluBI AGCT 4 cut(s) 118, 143, 197, 243
AluI AGCT 4 cut(s) 118, 143, 197, 243
Alw21I GWGCWC 1 cut(s) 245
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 197, 221
AspLEI GCGC 2 cut(s) 44, 160
BanII GRGCYC 1 cut(s) 245
BbrPI CACGTG 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 2 cut(s) 184, 208
BceAI ACGGC 2 cut(s) 62, 80
BfoI RGCGCY 1 cut(s) 161
BisI GCNGC 2 cut(s) 198, 222
BlsI GCNGC 2 cut(s) 199, 223
BmsI GCATC 2 cut(s) 64, 208
BpuEI CTTGAG 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 2 cut(s) 57, 223
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 135, 230
BseRI GAGGAG 3 cut(s) 10, 17, 20
BseXI GCAGC 2 cut(s) 184, 208
Bsh1236I CGCG 2 cut(s) 42, 69
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 190
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 245
BspACI CCGC 4 cut(s) 61, 67, 88, 93
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 2 cut(s) 136, 231
BspFNI CGCG 2 cut(s) 42, 69
BsrBI CCGCTC 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 129
BssNI GRCGYC 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 258
BstBAI YACGTR 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 35, 162
BstDEI CTNAG 2 cut(s) 144, 239
BstF5I GGATG 2 cut(s) 57, 223
BstFNI CGCG 2 cut(s) 42, 69
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 44, 160
BstMWI GCNNNNNNNGC 2 cut(s) 39, 48
BstNSI RCATGY 1 cut(s) 37
BstUI CGCG 2 cut(s) 42, 69
BstV1I GCAGC 2 cut(s) 184, 208
BsuRI GGCC 1 cut(s) 128
BtsCI GGATG 2 cut(s) 57, 223
Cac8I GCNNGC 2 cut(s) 35, 162
CfoI GCGC 2 cut(s) 44, 160
CviAII CATG 1 cut(s) 34
CviJI RGCY 5 cut(s) 118, 128, 143, 197, 243
CviKI_1 RGCY 5 cut(s) 118, 128, 143, 197, 243
DdeI CTNAG 2 cut(s) 144, 239
EciI GGCGGA 2 cut(s) 50, 82
Ecl136II GAGCTC 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 243
Eco72I CACGTG 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 245
FaeI CATG 1 cut(s) 37
FaiI YATR 6 cut(s) 35, 152, 171, 176, 202, 204
FatI CATG 1 cut(s) 33
FauNDI CATATG 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 198, 222
FokI GGATG 2 cut(s) 44, 230
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 2 cut(s) 198, 222
GlaI GCGC 2 cut(s) 43, 159
GluI GCNGC 2 cut(s) 198, 222
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 1 cut(s) 128
HhaI GCGC 2 cut(s) 44, 160
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 2 cut(s) 42, 158
HinP1I GCGC 2 cut(s) 42, 158
HinfI GANTC 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 2 cut(s) 121, 262
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 2 cut(s) 74, 263
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 3 cut(s) 47, 209, 258
HpyCH4V TGCA 2 cut(s) 33, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 48
HpyF3I CTNAG 2 cut(s) 144, 239
HpySE526I ACGT 3 cut(s) 47, 209, 258
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 2 cut(s) 42, 158
LmnI GCTCC 3 cut(s) 7, 90, 95
LpnPI CCDG 3 cut(s) 197, 200, 210
Lsp1109I GCAGC 2 cut(s) 184, 208
LweI GCATC 2 cut(s) 64, 208
MaeII ACGT 3 cut(s) 47, 209, 258
MaeIII GTNAC 2 cut(s) 97, 210
MbiI CCGCTC 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 245
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 7 cut(s) 28, 31, 38, 74, 119, 124, 247
MseI TTAA 2 cut(s) 230, 277
MspA1I CMGCKG 1 cut(s) 143
MvnI CGCG 2 cut(s) 42, 69
MwoI GCNNNNNNNGC 2 cut(s) 39, 48
NdeI CATATG 1 cut(s) 202
NlaIII CATG 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 1 cut(s) 37
PaeI GCATGC 1 cut(s) 37
PflMI CCANNNNNTGG 1 cut(s) 190
PkrI GCNGC 2 cut(s) 199, 223
PleI GAGTC 1 cut(s) 154
PmaCI CACGTG 1 cut(s) 48
PmlI CACGTG 1 cut(s) 48
PpsI GAGTC 1 cut(s) 154
Ppu21I YACGTR 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 245
Psp1406I AACGTT 1 cut(s) 209
PspCI CACGTG 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 143
SacI GAGCTC 1 cut(s) 245
SaqAI TTAA 2 cut(s) 230, 277
SatI GCNGC 2 cut(s) 198, 222
SchI GAGTC 1 cut(s) 155
SduI GDGCHC 1 cut(s) 245
SetI ASST 7 cut(s) 50, 120, 145, 199, 212, 245, 261
SfaNI GCATC 2 cut(s) 64, 208
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SphI GCATGC 1 cut(s) 37
SsiI CCGC 4 cut(s) 61, 67, 88, 93
SstI GAGCTC 1 cut(s) 245
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 3 cut(s) 50, 212, 261
TaqI TCGA 3 cut(s) 111, 245, 261
Tru1I TTAA 2 cut(s) 230, 277
Tru9I TTAA 2 cut(s) 230, 277
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 2 cut(s) 197, 221
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 219
Van91I CCANNNNNTGG 1 cut(s) 190
XceI RCATGY 1 cut(s) 37
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.