MD07G1253700.v1.1

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012118
Physical Location & Seq
Reverse (-)
32096298 .. 32097525
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1253700.v1.1.491

Sequence Viewer

Length: 387 bp
ATGTCGTCCGCATCCGCGACGACGCCGTATCCTCCATTCTCGACAAGTTCAAGAAGGTATGCAGAGGGATCCTCAGCTGAATCCATGGCGGCGCTTGCAAAAGTCGATATTGTGAAGCAGAGAATGGAAGCTGCATACGAGACATTGCAGGATGCTGCTGGGTTAACTCAGCTGAGTGCGACGGTGGAGGATGTTTTTGCAAGCGGTGATCTGCCTCTTGCGGCTGAAACTTTAGCCAACATGAGGCATTGCTTGTCTGCTGTTGGGGAGGTTGCTGAATTTGCTAATCTGAGGAAGCAACTTGAGGTCTTAGAGGATAGGCTTGATTCAATGGTGCAACCACGGCTAACTGATGCAATATCCAATCGCAAGGTCACATTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG7

Protein Analysis

129

Amino Acids

13.78

Weight (kDa)

4.82

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG7 PF10191 21 - 126 2.6e-39 Golgi complex component 7 (COG7)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012118)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51430
fragaria_vesca FvH4_7g19100 FvH4_7g27490
malus_domestica MD01G1182800.v1.1 MD07G1253700.v1.1
prunus_persica Prupe.2G277000_v2.0.a1
pyrus_communis pycom01g19300 pycom07g22640
rosa_chinensis RchiOBHm_Chr1g0374281
rosa_laevigata RLG00000026746
rosa_multiflora Rmu_ssc0000007.1_g000022
rosa_roxburghii Rroxscaffold_4G00283580
rosa_rugosa Rorug01G0382700
rosa_samantha Rh1AG393300 Rh1CG370500 Rh1CG371100 Rh1DG387900 Rh1DG388500
rosa_wichuraiana Rw1G034080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 5 cut(s) 9, 15, 89, 204, 221
AclWI GGATC 2 cut(s) 63, 76
AcsI RAATTY 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 2 cut(s) 51, 330
AluBI AGCT 3 cut(s) 77, 131, 172
AluI AGCT 3 cut(s) 77, 131, 172
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 63, 76
ApeKI GCWGC 2 cut(s) 131, 155
ApoI RAATTY 1 cut(s) 278
AspLEI GCGC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 218
BamHI GGATCC 1 cut(s) 68
BbvCI CCTCAGC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 118, 142
BceAI ACGGC 2 cut(s) 10, 359
BciVI GTATCC 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 134
BfoI RGCGCY 1 cut(s) 95
BfuI GTATCC 1 cut(s) 39
BisI GCNGC 4 cut(s) 90, 132, 156, 222
BlsI GCNGC 4 cut(s) 91, 133, 157, 223
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 3 cut(s) 20, 142, 343
BplI GAGNNNNNCTC 2 cut(s) 56, 88
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 84, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse3DI GCAATG 2 cut(s) 143, 247
BseDI CCNNGG 2 cut(s) 84, 341
BseGI GGATG 3 cut(s) 11, 157, 196
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 2 cut(s) 143, 247
BseMII CTCAG 4 cut(s) 87, 164, 182, 281
BseXI GCAGC 2 cut(s) 118, 142
BseYI CCCAGC 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 134
Bsp143I GATC 2 cut(s) 68, 208
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 5 cut(s) 9, 15, 89, 204, 221
BspCNI CTCAG 4 cut(s) 86, 165, 181, 282
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 2 cut(s) 63, 76
BsrDI GCAATG 2 cut(s) 143, 247
BssECI CCNNGG 2 cut(s) 84, 341
BssMI GATC 2 cut(s) 68, 208
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 96, 202
BstDEI CTNAG 5 cut(s) 73, 168, 173, 290, 310
BstDSI CCRYGG 2 cut(s) 84, 341
BstF5I GGATG 3 cut(s) 11, 157, 196
BstFNI CGCG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 2 cut(s) 71, 211
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 68, 208
BstMWI GCNNNNNNNGC 3 cut(s) 95, 281, 343
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 118, 142
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuI GTATCC 1 cut(s) 39
BtgI CCRYGG 2 cut(s) 84, 341
BtsCI GGATG 3 cut(s) 11, 157, 196
Cac8I GCNNGC 2 cut(s) 96, 202
CfoI GCGC 1 cut(s) 94
CseI GACGC 1 cut(s) 31
CviAII CATG 2 cut(s) 85, 241
CviJI RGCY 7 cut(s) 77, 131, 172, 224, 236, 322, 346
CviKI_1 RGCY 7 cut(s) 77, 131, 172, 224, 236, 322, 346
DdeI CTNAG 5 cut(s) 73, 168, 173, 290, 310
DpnI GATC 2 cut(s) 70, 210
DpnII GATC 2 cut(s) 68, 208
Eco130I CCWWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 88, 244
FaiI YATR 5 cut(s) 60, 86, 136, 242, 385
FatI CATG 2 cut(s) 84, 240
Fnu4HI GCNGC 4 cut(s) 90, 132, 156, 222
FokI GGATG 2 cut(s) 164, 203
Fsp4HI GCNGC 4 cut(s) 90, 132, 156, 222
GlaI GCGC 1 cut(s) 93
GluI GCNGC 4 cut(s) 90, 132, 156, 222
GsaI CCCAGC 1 cut(s) 162
HaeII RGCGCY 1 cut(s) 95
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 94
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 2 cut(s) 88, 244
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 2 cut(s) 80, 326
HpaI GTTAAC 1 cut(s) 165
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 2 cut(s) 40, 51
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 3 cut(s) 22, 25, 184
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 7 cut(s) 62, 98, 134, 148, 200, 337, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 281, 343
HpyF3I CTNAG 5 cut(s) 73, 168, 173, 290, 310
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 2 cut(s) 88, 244
HspAI GCGC 1 cut(s) 92
KspAI GTTAAC 1 cut(s) 165
Kzo9I GATC 2 cut(s) 68, 208
LpnPI CCDG 2 cut(s) 134, 144
Lsp1109I GCAGC 2 cut(s) 118, 142
LweI GCATC 3 cut(s) 20, 142, 343
MaeIII GTNAC 1 cut(s) 373
MalI GATC 2 cut(s) 70, 210
MboI GATC 2 cut(s) 68, 208
MflI RGATCY 1 cut(s) 68
MluCI AATT 1 cut(s) 278
MseI TTAA 1 cut(s) 164
MspA1I CMGCKG 2 cut(s) 77, 172
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 3 cut(s) 95, 281, 343
NcoI CCATGG 1 cut(s) 84
NdeII GATC 2 cut(s) 68, 208
NlaIII CATG 2 cut(s) 88, 244
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 373
PfeI GAWTC 2 cut(s) 80, 326
PkrI GCNGC 4 cut(s) 91, 133, 157, 223
PspFI CCCAGC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 70
PsuI RGATCY 1 cut(s) 68
PvuII CAGCTG 2 cut(s) 77, 172
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 4 cut(s) 90, 132, 156, 222
Sau3AI GATC 2 cut(s) 68, 208
SetI ASST 7 cut(s) 59, 79, 133, 174, 273, 309, 375
SfaNI GCATC 3 cut(s) 20, 142, 343
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 1 cut(s) 278
SsiI CCGC 5 cut(s) 9, 15, 89, 204, 221
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 2 cut(s) 41, 105
TasI AATT 1 cut(s) 278
TauI GCSGC 2 cut(s) 92, 224
TfiI GAWTC 2 cut(s) 80, 326
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 2 cut(s) 131, 155
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 372
XapI RAATTY 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.