Rroxscaffold_4G00283580

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012118
Physical Location & Seq
Forward (+)
5497781 .. 5502288
4508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283580.1

Sequence Viewer

Length: 2499 bp
ATGATGCTGGATCTCGGTCCGTTCTCCGACGAGAACTTCGACCGGAAGAAGTGGGTGAACTCGGCGTGCCAGAGTCGCCACCCGCAGGACTCAGTCGACAAGCACCTCGTGGATCTGGAGATGAAAATCCAGATGGTCTCGGAGGAGATCGGCGCCTCGCTCGAGGAGCAGAGCGCCTCCTCACTCCTCCGCGTGCCACGCGCCACGCGCGAAGTCATCCGCCTCCGCGACGACGCCGTTTCGCTCCGCTCCGCCGTCTCCTCAATCCTCGACAAGCTCAAGAAGGCTGAGGGATTGTCAGCTGAGTCTGTAATGGCGCTTGCGAAGTATGATATAGTGAAGCAGAGAATGGAAGCTGCGTATGAAACATTGCAGGATGCTGCTGGGTTAACTCAACTCAGCTCGACTGTGGAGGACGTCTTTGCCAGCGGGGATCTTCCCCGCGCGGCCGAAACCCTAGCCAACATGAGGCATTGCTTGTCAGCTGTTGGGGAGGTTGCTGAGTTTGCTAACGTGAGGAAGCAACTGGAGGTCTTAGAGGACAGGCTTGATTCAATGGTGCAACCACGTCTCACAGACGCAATATCCAATCGCAAGGTTGAGGTTGCGCAAGATTTGCGGGGAATTCTCATTCGAATTGGGAGATTCAAGTCCATGGAGCTACATTATACAAAAGTTCACCTAAAGCCAATAAAGCAGCTCTGGGAAGATTTTGACACAAAGCAACCACCGTCTAATAAGCTTGCAACTGACAAAACTAGTAATGAGTTTCACTCAGCTGCTCCCGGCATTCTGTTTTCCACTTGGCTGCCAAATTTCTATGATGAATTGCTGCTTTATCTTGAACAAGAATGGAAGTGGTGCATGGTTGCCTTTCCCGAGGATTATAAATCCCTTGTCCCAAAGCTGCTAGTTGAGACGATGGTAGCTGTAGGAGCAAGTTTTGTTTCACGCATCAACCTTGCAACTGGTGATGTTGTTCCAGAAACAAAATCACTGGGAAAAGGTATATTAGATATTCTCTCTGGTGATATGCCAAAGGGTATCAAAATCCAGACGAAGCATCTGGAGGCTTTGATTGAGTTACACAATATGACCCAGACCTTTGCAAGGAATATTCAGCACTTGTTTTCAGAATCTGATCTTCGTGTCTTGATGGATACGCTAAAGTCGGTGTATTTACCCTATGAATCATTTAAACAGAGGTATGGGCAGATGGAGCGCGCTATACTTTCTGCTGAGATTGCTGGGGTTGATCTAAGAGGAGCTGTTACTCGTGGTGTGGGAGCTCAGGGAATCGAACTTAGTGAAACGGTTCGCAGAATGGAGGAATCCATTCCCCAAGTTATTGTACTTCTTGAAGCAGCCGTTGAGAGATGCATCAACTTTACTGGAGGTTCCGAAGCTGATGAGCTAATTATTGCAGTTGATGACATAATGTTGCTTTATATCTCCACCTTGCAAGAAACCCTGAAATCGTTAAGAGTTGTCTGTGGAGTGGATCATGGTGGTGATGGTGTTGGCTCAAGGAAGGAGATGGGATTGGATAAGAAGGATGGCCAAAGTTCACGGAGAAGTGACTCGATTTCAAACGAGGAGGAGTGGTCCATTGTGCAAGGTGCTTTGCAAATCCTCACAGTTGCAGATTGTCTAACTAGCAGGTCCTCTGTTTTTGAAGCTTCCTTAAGGGCTACTCTGGCTAGGTTGAGCACAGCTCTGTCTGTTTCAGTTTTTGGTTCAAGTGCGGACCAAAACCTGTCACATGCTGCTAGTGATGATGGAAACGGGGAACCATCTTTGGGTGGAAGAGCTGCCTTGGATGTGGCAGCTGTTCGGCTAATTGATGTTCCTGAGAAGGCTCGGAAACTCTTCAACCTCTTAAGTCAGTCTAAAGATCCCCGGTTTCATGCACTTCCACTTGCATCTCAGAGAGTTGCAGCATTTGCTGACACTGTCAACGAACTTGTATATGATGTTCTCATTTCTAAAGTACGGCAACGCCTCAGTGATGTTTCTCGATTGCCAATATGGTCCTCAGTTGAAGAACAGAGTGCTTACCATCTCCCAACCTTCAGCTCATACCCTCAGGCCTACGTGACTAATGTTGGTGAATATCTTCTTACTTTACCCCAGCAGTTGGAGCCGCTTGCAGAGGGCATCGCAAATAGTGACACCAACAATGAGGAAGCCCAGTTTTTCGCAACAGAATGGATGTTCAAGGTTGCAGAGGGTGCCACTGCTCTTTACATGGAGCAGCTGCGAGGGATTCAGTATATCACAGACCGGGGAGCGCAACAGTTATCTGTTGACATAGAGTATCTAAGTAATGTGCTTTCTGCTCTGTCAATGCCAATTCCTCAAGTGCTATCCACATTCCATACCTGTCTTTCCACCCCAAGAGACCAGCTCAAAGATCTTATCAAATCAGATTCAGGAAACCAGCTTGATCTTCCTACTGCAAACCTTAGTTGTAAGATGCGGCGTGTGATGATAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG7

Protein Analysis

832

Amino Acids

92.2

Weight (kDa)

5.13

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG7 PF10191 4 - 828 5.1e-273 Golgi complex component 7 (COG7)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012118)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51430
fragaria_vesca FvH4_7g19100 FvH4_7g27490
malus_domestica MD01G1182800.v1.1 MD07G1253700.v1.1
prunus_persica Prupe.2G277000_v2.0.a1
pyrus_communis pycom01g19300 pycom07g22640
rosa_chinensis RchiOBHm_Chr1g0374281
rosa_laevigata RLG00000026746
rosa_multiflora Rmu_ssc0000007.1_g000022
rosa_roxburghii Rroxscaffold_4G00283580
rosa_rugosa Rorug01G0382700
rosa_samantha Rh1AG393300 Rh1CG370500 Rh1CG371100 Rh1DG387900 Rh1DG388500
rosa_wichuraiana Rw1G034080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 888
AatII GACGTC 1 cut(s) 420
Acc16I TGCGCA 1 cut(s) 609
Acc36I ACCTGC 1 cut(s) 1650
AccB1I GGYRCC 2 cut(s) 152, 2231
AccB7I CCANNNNNTGG 1 cut(s) 2137
AccBSI CCGCTC 1 cut(s) 249
AccI GTMKAC 1 cut(s) 96
AccII CGCG 8 cut(s) 192, 201, 208, 210, 228, 444, 446, 1224
AclWI GGATC 5 cut(s) 18, 120, 441, 1509, 1889
AcoI YGGCCR 2 cut(s) 447, 1558
AcsI RAATTY 2 cut(s) 624, 814
AcuI CTGAAG 1 cut(s) 2056
AcyI GRCGYC 3 cut(s) 153, 234, 417
AdeI CACNNNGTG 1 cut(s) 109
AfaI GTAC 2 cut(s) 1353, 1992
AfiI CCNNNNNNNGG 5 cut(s) 85, 468, 1110, 1799, 2137
AflII CTTAAG 2 cut(s) 1684, 1879
AhlI ACTAGT 1 cut(s) 758
AjiI CACGTC 1 cut(s) 569
Alw21I GWGCWC 2 cut(s) 1291, 1712
Alw26I GTCTC 5 cut(s) 142, 262, 575, 911, 2394
AlwI GGATC 5 cut(s) 18, 120, 441, 1509, 1889
AlwNI CAGNNNCTG 1 cut(s) 1139
Ama87I CYCGRG 2 cut(s) 161, 878
AoxI GGCC 3 cut(s) 447, 1558, 2088
ApoI RAATTY 2 cut(s) 624, 814
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
Asp700I GAANNNNTTC 4 cut(s) 1314, 1335, 1868, 2115
AspS9I GGNCC 5 cut(s) 17, 1605, 1662, 1747, 2031
AsuC2I CCSGG 3 cut(s) 786, 1900, 2285
AsuHPI GGTGA 6 cut(s) 67, 671, 983, 1040, 1523, 2120
AsuII TTCGAA 1 cut(s) 634
AvaI CYCGRG 2 cut(s) 161, 878
AvaII GGWCC 5 cut(s) 17, 1605, 1662, 1747, 2031
AxyI CCTNAGG 1 cut(s) 2085
BalI TGGCCA 1 cut(s) 1560
BanI GGYRCC 2 cut(s) 152, 2231
BanII GRGCYC 1 cut(s) 1291
BauI CACGAG 2 cut(s) 107, 1275
Bbv12I GWGCWC 2 cut(s) 1291, 1712
BbvCI CCTCAGC 1 cut(s) 288
BceAI ACGGC 4 cut(s) 221, 239, 1352, 2009
BciVI GTATCC 1 cut(s) 1153
BcnI CCSGG 3 cut(s) 786, 1900, 2285
BcoDI GTCTC 5 cut(s) 142, 262, 575, 911, 2394
BcuI ACTAGT 1 cut(s) 758
BfaI CTAG 6 cut(s) 458, 759, 911, 1656, 1701, 1770
BfmI CTRYAG 1 cut(s) 930
BfoI RGCGCY 3 cut(s) 156, 177, 320
BfrI CTTAAG 2 cut(s) 1684, 1879
BfuAI ACCTGC 1 cut(s) 1650
BfuI GTATCC 1 cut(s) 1153
BglII AGATCT 1 cut(s) 2413
Bme1390I CCNGG 3 cut(s) 786, 1900, 2285
Bme18I GGWCC 5 cut(s) 17, 1605, 1662, 1747, 2031
BmeT110I CYCGRG 2 cut(s) 161, 878
BmgBI CACGTC 1 cut(s) 569
BmgT120I GGNCC 5 cut(s) 17, 1605, 1662, 1747, 2031
BmiI GGNNCC 5 cut(s) 154, 1399, 1791, 2142, 2233
BmrFI CCNGG 3 cut(s) 786, 1900, 2285
BmrI ACTGGG 2 cut(s) 1007, 2185
BmsI GCATC 8 cut(s) 367, 963, 1072, 1367, 1389, 1931, 2166, 2466
BmuI ACTGGG 2 cut(s) 1007, 2185
BplI GAGNNNNNCTC 6 cut(s) 758, 790, 1699, 1731, 2391, 2423
BpmI CTGGAG 4 cut(s) 137, 548, 1088, 1413
Bpu10I CCTNAGC 2 cut(s) 288, 1290
Bpu14I TTCGAA 1 cut(s) 634
BpuEI CTTGAG 3 cut(s) 263, 1510, 2343
BpuMI CCSGG 3 cut(s) 786, 1900, 2285
BsaAI YACGTR 1 cut(s) 2095
BsaBI GATNNNNATC 1 cut(s) 125
BsaHI GRCGYC 3 cut(s) 153, 234, 417
BsaI GGTCTC 2 cut(s) 142, 2394
BsaJI CCNNGG 5 cut(s) 654, 879, 1815, 1898, 2284
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 1589, 1619
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 468, 1110, 1799, 2137
Bse1I ACTGG 5 cut(s) 531, 973, 1002, 1396, 2191
Bse21I CCTNAGG 1 cut(s) 2085
Bse3DI GCAATG 2 cut(s) 368, 472
Bse8I GATNNNNATC 1 cut(s) 125
BseDI CCNNGG 5 cut(s) 654, 879, 1815, 1898, 2284
BseGI GGATG 5 cut(s) 216, 382, 1561, 1825, 2217
BseJI GATNNNNATC 1 cut(s) 125
BseLI CCNNNNNNNGG 5 cut(s) 85, 468, 1110, 1799, 2137
BseMI GCAATG 2 cut(s) 368, 472
BseNI ACTGG 5 cut(s) 531, 973, 1002, 1396, 2191
BsePI GCGCGC 1 cut(s) 1222
BseRI GAGGAG 8 cut(s) 158, 169, 176, 179, 250, 1278, 1610, 1613
BseX3I CGGCCG 1 cut(s) 447
BseYI CCCAGC 3 cut(s) 383, 1247, 2130
Bsh1236I CGCG 8 cut(s) 192, 201, 208, 210, 228, 444, 446, 1224
Bsh1285I CGRYCG 2 cut(s) 43, 450
BshFI GGCC 3 cut(s) 449, 1560, 2090
BshNI GGYRCC 2 cut(s) 152, 2231
BsiEI CGRYCG 2 cut(s) 43, 450
BsiHKAI GWGCWC 2 cut(s) 1291, 1712
BsiHKCI CYCGRG 2 cut(s) 161, 878
BsiSI CCGG 4 cut(s) 43, 786, 1900, 2284
BslFI GGGAC 1 cut(s) 884
BslI CCNNNNNNNGG 5 cut(s) 85, 468, 1110, 1799, 2137
BsmAI GTCTC 5 cut(s) 142, 262, 575, 911, 2394
BsmBI CGTCTC 3 cut(s) 262, 575, 911
BsmFI GGGAC 1 cut(s) 884
BsmI GAATGC 1 cut(s) 789
BsnI GGCC 3 cut(s) 449, 1560, 2090
Bso31I GGTCTC 2 cut(s) 142, 2394
BsoBI CYCGRG 2 cut(s) 161, 878
Bsp119I TTCGAA 1 cut(s) 634
Bsp1286I GDGCHC 2 cut(s) 1291, 1712
Bsp19I CCATGG 1 cut(s) 654
BspANI GGCC 3 cut(s) 449, 1560, 2090
BspFNI CGCG 8 cut(s) 192, 201, 208, 210, 228, 444, 446, 1224
BspLI GGNNCC 5 cut(s) 154, 1399, 1791, 2142, 2233
BspMI ACCTGC 1 cut(s) 1650
BspPI GGATC 5 cut(s) 18, 120, 441, 1509, 1889
BspQI GCTCTTC 1 cut(s) 1801
BspT104I TTCGAA 1 cut(s) 634
BspT107I GGYRCC 2 cut(s) 152, 2231
BspTI CTTAAG 2 cut(s) 1684, 1879
BspTNI GGTCTC 2 cut(s) 142, 2394
BsrBI CCGCTC 1 cut(s) 249
BsrDI GCAATG 2 cut(s) 368, 472
BsrI ACTGG 5 cut(s) 531, 973, 1002, 1396, 2191
BssECI CCNNGG 5 cut(s) 654, 879, 1815, 1898, 2284
BssHII GCGCGC 1 cut(s) 1222
BssNI GRCGYC 3 cut(s) 153, 234, 417
BssSI CACGAG 2 cut(s) 107, 1275
BssT1I CCWWGG 2 cut(s) 654, 1815
Bst2BI CACGAG 2 cut(s) 107, 1275
Bst4CI ACNGT 6 cut(s) 409, 732, 1315, 1639, 1954, 2298
Bst6I CTCTTC 2 cut(s) 1801, 1874
BstACI GRCGYC 3 cut(s) 153, 234, 417
BstAFI CTTAAG 2 cut(s) 1684, 1879
BstAPI GCANNNNNTGC 3 cut(s) 616, 1943, 2231
BstBAI YACGTR 1 cut(s) 2095
BstBI TTCGAA 1 cut(s) 634
BstC8I GCNNGC 7 cut(s) 67, 194, 321, 427, 744, 1224, 2148
BstDSI CCRYGG 1 cut(s) 654
BstENI CCTNNNNNAGG 1 cut(s) 1108
BstF5I GGATG 5 cut(s) 216, 382, 1561, 1825, 2217
BstFNI CGCG 8 cut(s) 192, 201, 208, 210, 228, 444, 446, 1224
BstH2I RGCGCY 3 cut(s) 156, 177, 320
BstMAI GTCTC 5 cut(s) 142, 262, 575, 911, 2394
BstMCI CGRYCG 2 cut(s) 43, 450
BstNSI RCATGY 1 cut(s) 1766
BstSCI CCNGG 3 cut(s) 784, 1898, 2283
BstSFI CTRYAG 1 cut(s) 930
BstUI CGCG 8 cut(s) 192, 201, 208, 210, 228, 444, 446, 1224
BstX2I RGATCY 5 cut(s) 10, 112, 433, 1894, 2413
BstYI RGATCY 5 cut(s) 10, 112, 433, 1894, 2413
BstZI CGGCCG 1 cut(s) 447
Bsu36I CCTNAGG 1 cut(s) 2085
BsuI GTATCC 1 cut(s) 1153
BsuRI GGCC 3 cut(s) 449, 1560, 2090
BtgI CCRYGG 1 cut(s) 654
BtgZI GCGATG 1 cut(s) 2143
BtrI CACGTC 1 cut(s) 569
BtsCI GGATG 5 cut(s) 216, 382, 1561, 1825, 2217
BtsI GCAGTG 1 cut(s) 2235
BtsIMutI CAGTG 4 cut(s) 995, 1950, 2011, 2235
BveI ACCTGC 1 cut(s) 1650
Cac8I GCNNGC 7 cut(s) 67, 194, 321, 427, 744, 1224, 2148
CaiI CAGNNNCTG 1 cut(s) 1139
Cfr13I GGNCC 5 cut(s) 17, 1605, 1662, 1747, 2031
CpoI CGGWCCG 1 cut(s) 17
CseI GACGC 2 cut(s) 242, 587
Csp6I GTAC 2 cut(s) 1352, 1991
CspI CGGWCCG 1 cut(s) 17
CviAII CATG 7 cut(s) 466, 655, 865, 1505, 1763, 1907, 2248
CviQI GTAC 2 cut(s) 1352, 1991
DinI GGCGCC 1 cut(s) 154
DraI TTTAAA 1 cut(s) 1198
DraIII CACNNNGTG 1 cut(s) 109
EaeI YGGCCR 2 cut(s) 447, 1558
EagI CGGCCG 1 cut(s) 447
Eam1104I CTCTTC 2 cut(s) 1801, 1874
EarI CTCTTC 2 cut(s) 1801, 1874
EciI GGCGGA 2 cut(s) 209, 241
Ecl136II GAGCTC 1 cut(s) 1289
EclXI CGGCCG 1 cut(s) 447
Eco130I CCWWGG 2 cut(s) 654, 1815
Eco147I AGGCCT 1 cut(s) 2090
Eco24I GRGCYC 1 cut(s) 1291
Eco31I GGTCTC 2 cut(s) 142, 2394
Eco47I GGWCC 5 cut(s) 17, 1605, 1662, 1747, 2031
Eco52I CGGCCG 1 cut(s) 447
Eco53kI GAGCTC 1 cut(s) 1289
Eco57I CTGAAG 1 cut(s) 2056
Eco81I CCTNAGG 1 cut(s) 2085
Eco88I CYCGRG 2 cut(s) 161, 878
EcoICRI GAGCTC 1 cut(s) 1289
EcoNI CCTNNNNNAGG 1 cut(s) 1108
EcoO109I RGGNCCY 1 cut(s) 1662
EcoRI GAATTC 1 cut(s) 624
EcoT14I CCWWGG 2 cut(s) 654, 1815
EcoT22I ATGCAT 1 cut(s) 1382
EcoT38I GRGCYC 1 cut(s) 1291
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
ErhI CCWWGG 2 cut(s) 654, 1815
Esp3I CGTCTC 3 cut(s) 262, 575, 911
FaeI CATG 7 cut(s) 469, 658, 868, 1508, 1766, 1910, 2251
FaqI GGGAC 1 cut(s) 884
FatI CATG 7 cut(s) 465, 654, 864, 1504, 1762, 1906, 2247
FauI CCCGC 4 cut(s) 90, 422, 449, 612
FblI GTMKAC 1 cut(s) 96
FokI GGATG 5 cut(s) 203, 389, 1568, 1832, 2224
FriOI GRGCYC 1 cut(s) 1291
FspBI CTAG 6 cut(s) 458, 759, 911, 1656, 1701, 1770
FspI TGCGCA 1 cut(s) 609
GsaI CCCAGC 3 cut(s) 387, 1251, 2134
GsuI CTGGAG 4 cut(s) 137, 548, 1088, 1413
HaeII RGCGCY 3 cut(s) 156, 177, 320
HaeIII GGCC 3 cut(s) 449, 1560, 2090
HapII CCGG 4 cut(s) 43, 786, 1900, 2284
HgaI GACGC 2 cut(s) 242, 587
Hin1I GRCGYC 3 cut(s) 153, 234, 417
Hin1II CATG 7 cut(s) 469, 658, 868, 1508, 1766, 1910, 2251
HincII GTYRAC 4 cut(s) 97, 390, 1957, 2308
HindII GTYRAC 4 cut(s) 97, 390, 1957, 2308
HindIII AAGCTT 2 cut(s) 740, 1677
HpaI GTTAAC 1 cut(s) 390
HpaII CCGG 4 cut(s) 43, 786, 1900, 2284
HphI GGTGA 6 cut(s) 67, 671, 983, 1040, 1523, 2120
Hpy166II GTNNAC 7 cut(s) 58, 97, 390, 679, 1568, 1957, 2308
Hpy188I TCNGA 8 cut(s) 28, 142, 1135, 1141, 1402, 1863, 1929, 2428
Hpy8I GTNNAC 7 cut(s) 58, 97, 390, 679, 1568, 1957, 2308
Hpy99I CGWCG 3 cut(s) 32, 233, 236
HpyAV CCTTC 5 cut(s) 277, 1525, 1546, 1849, 2080
HpyCH4III ACNGT 6 cut(s) 409, 732, 1315, 1639, 1954, 2298
HpyCH4IV ACGT 4 cut(s) 417, 513, 568, 2094
HpySE526I ACGT 4 cut(s) 417, 513, 568, 2094
Hsp92I GRCGYC 3 cut(s) 153, 234, 417
Hsp92II CATG 7 cut(s) 469, 658, 868, 1508, 1766, 1910, 2251
KasI GGCGCC 1 cut(s) 152
KspAI GTTAAC 1 cut(s) 390
LguI GCTCTTC 1 cut(s) 1801
LweI GCATC 8 cut(s) 367, 963, 1072, 1367, 1389, 1931, 2166, 2466
MaeI CTAG 6 cut(s) 458, 759, 911, 1656, 1701, 1770
MaeII ACGT 4 cut(s) 417, 513, 568, 2094
MaeIII GTNAC 6 cut(s) 1083, 1270, 1577, 1758, 2095, 2168
MbiI CCGCTC 1 cut(s) 249
MboII GAAGA 9 cut(s) 58, 428, 719, 1136, 1818, 1861, 2054, 2108, 2441
MflI RGATCY 5 cut(s) 10, 112, 433, 1894, 2413
MhlI GDGCHC 2 cut(s) 1291, 1712
MlsI TGGCCA 1 cut(s) 1560
MluCI AATT 7 cut(s) 624, 636, 814, 827, 1416, 1839, 2352
MluNI TGGCCA 1 cut(s) 1560
Mly113I GGCGCC 1 cut(s) 153
MlyI GAGTC 4 cut(s) 82, 83, 314, 1574
MmeI TCCRAC 2 cut(s) 51, 2118
Mox20I TGGCCA 1 cut(s) 1560
Mph1103I ATGCAT 1 cut(s) 1382
MroXI GAANNNNTTC 4 cut(s) 1314, 1335, 1868, 2115
MscI TGGCCA 1 cut(s) 1560
MseI TTAA 5 cut(s) 389, 1197, 1481, 1685, 1880
MslI CAYNNNNRTG 1 cut(s) 1509
Msp20I TGGCCA 1 cut(s) 1560
MspA1I CMGCKG 6 cut(s) 302, 429, 485, 779, 1829, 2257
MspCI CTTAAG 2 cut(s) 1684, 1879
MspI CCGG 4 cut(s) 43, 786, 1900, 2284
MspR9I CCNGG 3 cut(s) 786, 1900, 2285
Mva1269I GAATGC 1 cut(s) 789
MvnI CGCG 8 cut(s) 192, 201, 208, 210, 228, 444, 446, 1224
NarI GGCGCC 1 cut(s) 153
NciI CCSGG 3 cut(s) 786, 1900, 2285
NcoI CCATGG 1 cut(s) 654
NlaIII CATG 7 cut(s) 469, 658, 868, 1508, 1766, 1910, 2251
NlaIV GGNNCC 5 cut(s) 154, 1399, 1791, 2142, 2233
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 4 cut(s) 1577, 1758, 2095, 2168
NsbI TGCGCA 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 1382
NspI RCATGY 1 cut(s) 1766
NspV TTCGAA 1 cut(s) 634
PaeR7I CTCGAG 1 cut(s) 161
PauI GCGCGC 1 cut(s) 1222
PceI AGGCCT 1 cut(s) 2090
PciSI GCTCTTC 1 cut(s) 1801
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 789
PdmI GAANNNNTTC 4 cut(s) 1314, 1335, 1868, 2115
PfeI GAWTC 8 cut(s) 551, 645, 1136, 1190, 1296, 1331, 2266, 2429
PflFI GACNNNGTC 2 cut(s) 92, 1952
PflMI CCANNNNNTGG 1 cut(s) 2137
PleI GAGTC 4 cut(s) 81, 83, 313, 1574
PluTI GGCGCC 1 cut(s) 156
PpsI GAGTC 4 cut(s) 81, 83, 313, 1574
Ppu21I YACGTR 1 cut(s) 2095
PpuMI RGGWCCY 1 cut(s) 1662
PsiI TTATAA 1 cut(s) 888
Psp124BI GAGCTC 1 cut(s) 1291
Psp5II RGGWCCY 1 cut(s) 1662
PspFI CCCAGC 3 cut(s) 383, 1247, 2130
PspN4I GGNNCC 5 cut(s) 154, 1399, 1791, 2142, 2233
PspPI GGNCC 5 cut(s) 17, 1605, 1662, 1747, 2031
PspPPI RGGWCCY 1 cut(s) 1662
PspXI VCTCGAGB 1 cut(s) 161
PsrI GAACNNNNNNTAC 2 cut(s) 1959, 1991
PstNI CAGNNNCTG 1 cut(s) 1139
PsuI RGATCY 5 cut(s) 10, 112, 433, 1894, 2413
PsyI GACNNNGTC 2 cut(s) 92, 1952
PteI GCGCGC 1 cut(s) 1222
PvuII CAGCTG 5 cut(s) 302, 485, 779, 1829, 2257
RsaI GTAC 2 cut(s) 1353, 1992
RsaNI GTAC 2 cut(s) 1352, 1991
RseI CAYNNNNRTG 1 cut(s) 1509
Rsr2I CGGWCCG 1 cut(s) 17
RsrII CGGWCCG 1 cut(s) 17
SacI GAGCTC 1 cut(s) 1291
SalI GTCGAC 1 cut(s) 95
SapI GCTCTTC 1 cut(s) 1801
SaqAI TTAA 5 cut(s) 389, 1197, 1481, 1685, 1880
Sau96I GGNCC 5 cut(s) 17, 1605, 1662, 1747, 2031
SchI GAGTC 4 cut(s) 82, 83, 314, 1574
ScrFI CCNGG 3 cut(s) 786, 1900, 2285
SduI GDGCHC 2 cut(s) 1291, 1712
SfaNI GCATC 8 cut(s) 367, 963, 1072, 1367, 1389, 1931, 2166, 2466
SfcI CTRYAG 1 cut(s) 930
SfoI GGCGCC 1 cut(s) 154
Sfr274I CTCGAG 1 cut(s) 161
SfuI TTCGAA 1 cut(s) 634
SinI GGWCC 5 cut(s) 17, 1605, 1662, 1747, 2031
SlaI CTCGAG 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 1509
SmlI CTYRAG 6 cut(s) 161, 278, 1525, 1684, 1879, 2358
SmoI CTYRAG 6 cut(s) 161, 278, 1525, 1684, 1879, 2358
SpeI ACTAGT 1 cut(s) 758
Sse9I AATT 7 cut(s) 624, 636, 814, 827, 1416, 1839, 2352
SseBI AGGCCT 1 cut(s) 2090
SspDI GGCGCC 1 cut(s) 152
SspI AATATT 1 cut(s) 1117
SspMI CTAG 6 cut(s) 458, 759, 911, 1656, 1701, 1770
SstI GAGCTC 1 cut(s) 1291
StuI AGGCCT 1 cut(s) 2090
StyD4I CCNGG 3 cut(s) 784, 1898, 2283
StyI CCWWGG 2 cut(s) 654, 1815
TaaI ACNGT 6 cut(s) 409, 732, 1315, 1639, 1954, 2298
TaiI ACGT 4 cut(s) 420, 516, 571, 2097
TaqI TCGA 9 cut(s) 39, 96, 162, 270, 404, 634, 1299, 1583, 2017
TaqII GACCGA 1 cut(s) 5
TasI AATT 7 cut(s) 624, 636, 814, 827, 1416, 1839, 2352
TatI WGTACW 1 cut(s) 1351
TauI GCSGC 3 cut(s) 449, 2146, 2482
TfiI GAWTC 8 cut(s) 551, 645, 1136, 1190, 1296, 1331, 2266, 2429
Tru1I TTAA 5 cut(s) 389, 1197, 1481, 1685, 1880
Tru9I TTAA 5 cut(s) 389, 1197, 1481, 1685, 1880
TscAI CASTG 4 cut(s) 1002, 1957, 2011, 2242
TseFI GTSAC 4 cut(s) 1577, 1758, 2095, 2168
Tsp45I GTSAC 4 cut(s) 1577, 1758, 2095, 2168
TspDTI ATGAA 5 cut(s) 137, 378, 840, 1203, 1895
TspGWI ACGGA 2 cut(s) 9, 1585
TspRI CASTG 4 cut(s) 1002, 1957, 2011, 2242
Tth111I GACNNNGTC 2 cut(s) 92, 1952
Van91I CCANNNNNTGG 1 cut(s) 2137
Vha464I CTTAAG 2 cut(s) 1684, 1879
VpaK11BI GGWCC 5 cut(s) 17, 1605, 1662, 1747, 2031
XagI CCTNNNNNAGG 1 cut(s) 1108
XapI RAATTY 2 cut(s) 624, 814
XceI RCATGY 1 cut(s) 1766
XhoI CTCGAG 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 96
XmnI GAANNNNTTC 4 cut(s) 1314, 1335, 1868, 2115
XspI CTAG 6 cut(s) 458, 759, 911, 1656, 1701, 1770
ZraI GACGTC 1 cut(s) 418
Zsp2I ATGCAT 1 cut(s) 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.