Rh1CG371100

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012118
Physical Location & Seq
Reverse (-)
64085802 .. 64086583
782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG371100.1

Sequence Viewer

Length: 492 bp
ATGATGCTGGATCTCGGTCCTTTCTCCGACGAGAACTTCGACCGTAAGAAGTGGGTGAACTCGGCGTGCCAGAGTCGCCACCCGCAGGACTCAGTCGACAAGCACCTCGTGGATCTGGAGATGAAAATCCAGATGGTCTCGGAGGAGATCGGCGCCTCGCTCGAGGAGCAGAGCGCCTCCTCACTCCTCCGCGTGTCACGCGCCACGCGCGAAGTCATCCGCCTCCGCGACGACGCCGTTTCGCTCCGCTCCGCCGTCTCCTCAATCCTCGACAAGCTCAAGAAGGCTGAGGGATTGTCAGCTGAGTCTGTAATGGCGCTTGCGAAGTACGATATAGTGAAGCAGAGAATGGAAGCTGCGTATGAAACATTGCAGGATGCTGCTGGATTAACTCAACTGAGCTCGACTGTGGAGGACGTCTTTGCCAGCGGTGATCTTCCTCGCGCTGCCGAAACCCTAGCATTGCTTGTCAGCTGTAGGGGAGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG7

Protein Analysis

163

Amino Acids

17.85

Weight (kDa)

5.0

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COG7 PF10191 4 - 159 2.7e-52 Golgi complex component 7 (COG7)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012118)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51430
fragaria_vesca FvH4_7g19100 FvH4_7g27490
malus_domestica MD01G1182800.v1.1 MD07G1253700.v1.1
prunus_persica Prupe.2G277000_v2.0.a1
pyrus_communis pycom01g19300 pycom07g22640
rosa_chinensis RchiOBHm_Chr1g0374281
rosa_laevigata RLG00000026746
rosa_multiflora Rmu_ssc0000007.1_g000022
rosa_roxburghii Rroxscaffold_4G00283580
rosa_rugosa Rorug01G0382700
rosa_samantha Rh1AG393300 Rh1CG370500 Rh1CG371100 Rh1DG387900 Rh1DG388500
rosa_wichuraiana Rw1G034080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 420
AccB1I GGYRCC 1 cut(s) 152
AccBSI CCGCTC 1 cut(s) 249
AccI GTMKAC 1 cut(s) 96
AccII CGCG 6 cut(s) 192, 201, 208, 210, 228, 444
AciI CCGC 7 cut(s) 83, 190, 220, 226, 247, 252, 429
AclWI GGATC 2 cut(s) 18, 120
AcyI GRCGYC 3 cut(s) 153, 234, 417
AdeI CACNNNGTG 1 cut(s) 109
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 85
AluBI AGCT 5 cut(s) 277, 302, 356, 402, 474
AluI AGCT 5 cut(s) 277, 302, 356, 402, 474
Alw21I GWGCWC 1 cut(s) 404
Alw26I GTCTC 2 cut(s) 142, 262
AlwI GGATC 2 cut(s) 18, 120
Ama87I CYCGRG 1 cut(s) 161
ApeKI GCWGC 3 cut(s) 356, 380, 446
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AspLEI GCGC 6 cut(s) 155, 176, 203, 210, 319, 446
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 67, 443
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 152
BanII GRGCYC 1 cut(s) 404
BauI CACGAG 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 404
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 343, 367, 433
BccI CCATC 1 cut(s) 127
BceAI ACGGC 2 cut(s) 221, 239
BcoDI GTCTC 2 cut(s) 142, 262
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 1 cut(s) 475
BfoI RGCGCY 3 cut(s) 156, 177, 320
BisI GCNGC 3 cut(s) 357, 381, 447
BlsI GCNGC 3 cut(s) 358, 382, 448
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 367
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 125
BsaHI GRCGYC 3 cut(s) 153, 234, 417
BsaI GGTCTC 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse3DI GCAATG 2 cut(s) 368, 461
Bse8I GATNNNNATC 1 cut(s) 125
BseGI GGATG 2 cut(s) 216, 382
BseJI GATNNNNATC 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 2 cut(s) 368, 461
BseMII CTCAG 4 cut(s) 105, 279, 294, 389
BseRI GAGGAG 5 cut(s) 158, 169, 176, 179, 250
BseXI GCAGC 3 cut(s) 343, 367, 433
Bsh1236I CGCG 6 cut(s) 192, 201, 208, 210, 228, 444
Bsh1285I CGRYCG 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 404
BsiHKCI CYCGRG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 142, 262
BsmBI CGTCTC 1 cut(s) 262
Bso31I GGTCTC 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 4 cut(s) 10, 112, 147, 433
BspACI CCGC 7 cut(s) 83, 190, 220, 226, 247, 252, 429
BspCNI CTCAG 4 cut(s) 104, 280, 295, 390
BspFNI CGCG 6 cut(s) 192, 201, 208, 210, 228, 444
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 2 cut(s) 18, 120
BspT107I GGYRCC 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 142
BsrBI CCGCTC 1 cut(s) 249
BsrDI GCAATG 2 cut(s) 368, 461
BssMI GATC 4 cut(s) 10, 112, 147, 433
BssNI GRCGYC 3 cut(s) 153, 234, 417
BssSI CACGAG 1 cut(s) 107
Bst2BI CACGAG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 44, 409
BstACI GRCGYC 3 cut(s) 153, 234, 417
BstC8I GCNNGC 3 cut(s) 67, 321, 427
BstDEI CTNAG 4 cut(s) 91, 288, 303, 398
BstF5I GGATG 2 cut(s) 216, 382
BstFNI CGCG 6 cut(s) 192, 201, 208, 210, 228, 444
BstH2I RGCGCY 3 cut(s) 156, 177, 320
BstHHI GCGC 6 cut(s) 155, 176, 203, 210, 319, 446
BstKTI GATC 4 cut(s) 13, 115, 150, 436
BstMAI GTCTC 2 cut(s) 142, 262
BstMBI GATC 4 cut(s) 10, 112, 147, 433
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 4 cut(s) 75, 166, 198, 207
BstSFI CTRYAG 1 cut(s) 475
BstUI CGCG 6 cut(s) 192, 201, 208, 210, 228, 444
BstV1I GCAGC 3 cut(s) 343, 367, 433
BstX2I RGATCY 2 cut(s) 10, 112
BstYI RGATCY 2 cut(s) 10, 112
BtsCI GGATG 2 cut(s) 216, 382
Cac8I GCNNGC 3 cut(s) 67, 321, 427
CfoI GCGC 6 cut(s) 155, 176, 203, 210, 319, 446
Cfr13I GGNCC 1 cut(s) 17
CseI GACGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 328
CviJI RGCY 6 cut(s) 277, 287, 302, 356, 402, 474
CviKI_1 RGCY 6 cut(s) 277, 287, 302, 356, 402, 474
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 4 cut(s) 91, 288, 303, 398
DinI GGCGCC 1 cut(s) 154
DpnI GATC 4 cut(s) 12, 114, 149, 435
DpnII GATC 4 cut(s) 10, 112, 147, 433
DraIII CACNNNGTG 1 cut(s) 109
EciI GGCGGA 2 cut(s) 209, 241
Ecl136II GAGCTC 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 404
Eco31I GGTCTC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 404
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
Esp3I CGTCTC 1 cut(s) 262
FaiI YATR 2 cut(s) 335, 363
FauI CCCGC 1 cut(s) 90
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 357, 381, 447
FokI GGATG 2 cut(s) 203, 389
FriOI GRGCYC 1 cut(s) 404
Fsp4HI GCNGC 3 cut(s) 357, 381, 447
FspBI CTAG 1 cut(s) 458
GlaI GCGC 6 cut(s) 154, 175, 202, 209, 318, 445
GluI GCNGC 3 cut(s) 357, 381, 447
GsuI CTGGAG 1 cut(s) 137
HaeII RGCGCY 3 cut(s) 156, 177, 320
HgaI GACGC 1 cut(s) 242
HhaI GCGC 6 cut(s) 155, 176, 203, 210, 319, 446
Hin1I GRCGYC 3 cut(s) 153, 234, 417
Hin6I GCGC 6 cut(s) 153, 174, 201, 208, 317, 444
HinP1I GCGC 6 cut(s) 153, 174, 201, 208, 317, 444
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 3 cut(s) 73, 89, 305
HphI GGTGA 2 cut(s) 67, 443
Hpy166II GTNNAC 2 cut(s) 58, 97
Hpy188I TCNGA 2 cut(s) 28, 142
Hpy188III TCNNGA 3 cut(s) 116, 130, 280
Hpy8I GTNNAC 2 cut(s) 58, 97
Hpy99I CGWCG 3 cut(s) 32, 233, 236
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 44, 409
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 166, 198, 207
HpyF3I CTNAG 4 cut(s) 91, 288, 303, 398
HpySE526I ACGT 1 cut(s) 417
Hsp92I GRCGYC 3 cut(s) 153, 234, 417
HspAI GCGC 6 cut(s) 153, 174, 201, 208, 317, 444
KasI GGCGCC 1 cut(s) 152
Kzo9I GATC 4 cut(s) 10, 112, 147, 433
LmnI GCTCC 3 cut(s) 166, 249, 254
LpnPI CCDG 7 cut(s) 71, 83, 101, 143, 359, 369, 439
Lsp1109I GCAGC 3 cut(s) 343, 367, 433
LweI GCATC 1 cut(s) 367
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 195
MalI GATC 4 cut(s) 12, 114, 149, 435
MbiI CCGCTC 1 cut(s) 249
MboI GATC 4 cut(s) 10, 112, 147, 433
MboII GAAGA 1 cut(s) 428
MflI RGATCY 2 cut(s) 10, 112
MhlI GDGCHC 1 cut(s) 404
Mly113I GGCGCC 1 cut(s) 153
MlyI GAGTC 3 cut(s) 82, 83, 314
MmeI TCCRAC 1 cut(s) 51
MseI TTAA 1 cut(s) 389
MspA1I CMGCKG 3 cut(s) 302, 429, 474
MvnI CGCG 6 cut(s) 192, 201, 208, 210, 228, 444
MwoI GCNNNNNNNGC 4 cut(s) 75, 166, 198, 207
NarI GGCGCC 1 cut(s) 153
NdeII GATC 4 cut(s) 10, 112, 147, 433
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 195
PaeR7I CTCGAG 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 3 cut(s) 358, 382, 448
PleI GAGTC 3 cut(s) 81, 83, 313
PluTI GGCGCC 1 cut(s) 156
PpsI GAGTC 3 cut(s) 81, 83, 313
Psp124BI GAGCTC 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 17
PspXI VCTCGAGB 1 cut(s) 161
PsuI RGATCY 2 cut(s) 10, 112
PsyI GACNNNGTC 1 cut(s) 92
PvuII CAGCTG 2 cut(s) 302, 474
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SacI GAGCTC 1 cut(s) 404
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 3 cut(s) 357, 381, 447
Sau3AI GATC 4 cut(s) 10, 112, 147, 433
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 3 cut(s) 82, 83, 314
SduI GDGCHC 1 cut(s) 404
SetI ASST 8 cut(s) 108, 279, 304, 358, 404, 420, 476, 487
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 475
SfoI GGCGCC 1 cut(s) 154
Sfr274I CTCGAG 1 cut(s) 161
SinI GGWCC 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 161
SmlI CTYRAG 2 cut(s) 161, 278
SmoI CTYRAG 2 cut(s) 161, 278
SsiI CCGC 7 cut(s) 83, 190, 220, 226, 247, 252, 429
SspDI GGCGCC 1 cut(s) 152
SspMI CTAG 1 cut(s) 458
SstI GAGCTC 1 cut(s) 404
TaaI ACNGT 2 cut(s) 44, 409
TaiI ACGT 1 cut(s) 420
TaqI TCGA 5 cut(s) 39, 96, 162, 270, 404
TaqII GACCGA 1 cut(s) 5
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 3 cut(s) 356, 380, 446
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 2 cut(s) 137, 378
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 458
ZraI GACGTC 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.