FvH4_7g19290

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017673
Physical Location & Seq
Reverse (-)
15927671 .. 15928597
927 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19290.t1

Sequence Viewer

Length: 927 bp
ATGGAATCATACCATCAGCTTCTTCATCTCAGTTTCAATCACCGGAGGATCAGCAGTGATGAATCCGATCGAAGATGGGAGGACTTGAACCCGGACTGTTTGGTCAACGTTTTCGAAAGAGTGGGAACTGGGTCACTTCTAGTCTCTGTCCCTTTCGTCTGCAAGTCATGGTACAGATCGAGCCTCAACCCTGCTTGCTGGCAACGCCTCGTTGTACCAGACGATGTCCCAGGTACGGATTCTTTCGACATTAATGGGACTGATGATCTTTCAAGTTATGATGCTCAAGATGAAGAGTCTAGATTTAGGTTCTTTGTGAGAAAAAGATTTGCAATTGAGTTTCAGCTTGATTTGAAGGGTTTCTCCACCGCTAGGTTTTTCAAGTTTGTGATTGATCGTAGCATGGGAAATGTGAGGTTTCTTAAGCTGCCTACTGGCTCTAATGCTTTAGAAGGAGTACTTGAACATGTGAAGGAGAAATGCAAGAGTTTTATTGGGTTGAATGTGTGTGATGCCGATATTGGGAAGAAGGCGGCATTGGCGATTGTCAAGTTTGTGCCGAAGATTAGGTACTTGTGGTTGAGGAGGGCGAGAATTGGTAGGCAGGGTCTTATTACTTTATTGCAAGGCTGCAAGGATCTTGAACTTTTGGATGTTAGGGAGTGTTGTGGTTTCGATGAGGGGGATGAGGAAATAGCTAAGCTTGCTGCTAGTATTCCTAAGTTTATGTGTGAGGGTTCTAGAGTTGGACAGGGAGGAGGAGGGCCCAGGGTCTTGTATGGAAACCGTTTTGGAGGGCGACGACTGTTGTATGTTGGAGGAGGACAAAGAGTCTTGAATGTTGGAGGAGGACAAAGAGTCTTGAATGTCCAACGAGGAGGAGAACGAGTTGTGATGACATTAGAGCCTTTAGAGGACAGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

309

Amino Acids

34.68

Weight (kDa)

8.7

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017673)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24920 FvH4_7g19290
rosa_chinensis RchiOBHm_Chr1g0363161
rosa_laevigata RLG00000027587
rosa_multiflora Rmu_sc0002925.1_g000002
rosa_roxburghii Rroxscaffold_4G00293400
rosa_rugosa Rorug01G0305200.1
rosa_samantha Rh1AG313900 Rh1BG277400 Rh1CG293800 Rh1DG307900
rosa_wichuraiana Rw1G027810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AciI CCGC 2 cut(s) 369, 533
AclI AACGTT 1 cut(s) 108
AclWI GGATC 2 cut(s) 56, 645
AfaI GTAC 5 cut(s) 173, 216, 235, 459, 572
AfiI CCNNNNNNNGG 3 cut(s) 235, 372, 522
AflII CTTAAG 1 cut(s) 422
AflIII ACRYGT 1 cut(s) 466
AhdI GACNNNNNGTC 2 cut(s) 830, 857
AjnI CCWGG 2 cut(s) 229, 767
AjuI GAANNNNNNNTTGG 2 cut(s) 521, 553
AluBI AGCT 5 cut(s) 19, 346, 427, 698, 703
AluI AGCT 5 cut(s) 19, 346, 427, 698, 703
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 2 cut(s) 56, 645
AoxI GGCC 1 cut(s) 764
ApaI GGGCCC 1 cut(s) 768
ApeKI GCWGC 3 cut(s) 427, 630, 707
AseI ATTAAT 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 764, 765
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 32
AsuII TTCGAA 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 768
BanII GRGCYC 1 cut(s) 768
BarI GAAGNNNNNNTAC 2 cut(s) 554, 586
BbvI GCAGC 3 cut(s) 414, 617, 694
BccI CCATC 2 cut(s) 21, 69
BciT130I CCWGG 2 cut(s) 231, 769
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 5 cut(s) 140, 300, 372, 711, 741
BfrI CTTAAG 1 cut(s) 422
BisI GCNGC 4 cut(s) 428, 534, 631, 708
BlpI GCTNAGC 1 cut(s) 699
BlsI GCNGC 4 cut(s) 429, 535, 632, 709
BmcAI AGTACT 1 cut(s) 459
Bme1390I CCNGG 3 cut(s) 92, 231, 769
BmeRI GACNNNNNGTC 2 cut(s) 830, 857
BmgT120I GGNCC 2 cut(s) 764, 765
BmiI GGNNCC 1 cut(s) 766
BmrFI CCNGG 3 cut(s) 92, 231, 769
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 271, 502
BmuI ACTGGG 1 cut(s) 138
Bpu1102I GCTNAGC 1 cut(s) 699
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 92
BsaJI CCNNGG 3 cut(s) 229, 767, 768
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 873, 903
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 372, 522
Bse1I ACTGG 2 cut(s) 133, 439
BseBI CCWGG 2 cut(s) 231, 769
BseDI CCNNGG 3 cut(s) 229, 767, 768
BseGI GGATG 2 cut(s) 658, 691
BseLI CCNNNNNNNGG 3 cut(s) 235, 372, 522
BseMII CTCAG 1 cut(s) 43
BseNI ACTGG 2 cut(s) 133, 439
BseRI GAGGAG 7 cut(s) 598, 771, 774, 834, 861, 891, 894
BseSI GKGCMC 1 cut(s) 768
BseXI GCAGC 3 cut(s) 414, 617, 694
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 766
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 2 cut(s) 43, 92
BslFI GGGAC 3 cut(s) 134, 212, 271
BslI CCNNNNNNNGG 3 cut(s) 235, 372, 522
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 3 cut(s) 134, 212, 271
BsnI GGCC 1 cut(s) 766
Bsp119I TTCGAA 1 cut(s) 114
Bsp120I GGGCCC 1 cut(s) 764
Bsp1286I GDGCHC 1 cut(s) 768
Bsp143I GATC 6 cut(s) 48, 67, 176, 265, 394, 637
Bsp1720I GCTNAGC 1 cut(s) 699
BspACI CCGC 2 cut(s) 369, 533
BspANI GGCC 1 cut(s) 766
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 766
BspPI GGATC 2 cut(s) 56, 645
BspT104I TTCGAA 1 cut(s) 114
BspTI CTTAAG 1 cut(s) 422
BsrI ACTGG 2 cut(s) 133, 439
BssECI CCNNGG 3 cut(s) 229, 767, 768
BssMI GATC 6 cut(s) 48, 67, 176, 265, 394, 637
Bst2UI CCWGG 2 cut(s) 231, 769
Bst4CI ACNGT 3 cut(s) 98, 788, 807
Bst6I CTCTTC 1 cut(s) 288
BstAFI CTTAAG 1 cut(s) 422
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 3 cut(s) 196, 200, 705
BstDEI CTNAG 3 cut(s) 29, 699, 720
BstF5I GGATG 2 cut(s) 658, 691
BstKTI GATC 6 cut(s) 51, 70, 179, 268, 397, 640
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 6 cut(s) 48, 67, 176, 265, 394, 637
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 204, 539, 704
BstNI CCWGG 2 cut(s) 231, 769
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 3 cut(s) 90, 229, 767
BstSLI GKGCMC 1 cut(s) 768
BstV1I GCAGC 3 cut(s) 414, 617, 694
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 1 cut(s) 766
BtsCI GGATG 2 cut(s) 658, 691
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
Cac8I GCNNGC 3 cut(s) 196, 200, 705
Cfr13I GGNCC 2 cut(s) 764, 765
Csp6I GTAC 5 cut(s) 172, 215, 234, 458, 571
CviAII CATG 4 cut(s) 168, 403, 467, 924
CviQI GTAC 5 cut(s) 172, 215, 234, 458, 571
DdeI CTNAG 3 cut(s) 29, 699, 720
DpnI GATC 6 cut(s) 50, 69, 178, 267, 396, 639
DpnII GATC 6 cut(s) 48, 67, 176, 265, 394, 637
DrdI GACNNNNNNGTC 1 cut(s) 101
DriI GACNNNNNGTC 2 cut(s) 830, 857
DseDI GACNNNNNNGTC 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 288
Eam1105I GACNNNNNGTC 2 cut(s) 830, 857
EarI CTCTTC 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 768
EcoO109I RGGNCCY 1 cut(s) 764
EcoRII CCWGG 2 cut(s) 229, 767
EcoT38I GRGCYC 1 cut(s) 768
FaeI CATG 4 cut(s) 171, 406, 470, 927
FaiI YATR 9 cut(s) 10, 169, 279, 404, 468, 728, 780, 813, 925
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 3 cut(s) 134, 212, 271
FatI CATG 4 cut(s) 167, 402, 466, 923
Fnu4HI GCNGC 4 cut(s) 428, 534, 631, 708
FokI GGATG 2 cut(s) 665, 698
FriOI GRGCYC 1 cut(s) 768
Fsp4HI GCNGC 4 cut(s) 428, 534, 631, 708
FspBI CTAG 5 cut(s) 140, 300, 372, 711, 741
GluI GCNGC 4 cut(s) 428, 534, 631, 708
HaeIII GGCC 1 cut(s) 766
HapII CCGG 2 cut(s) 43, 92
Hin1II CATG 4 cut(s) 171, 406, 470, 927
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 6 cut(s) 5, 62, 239, 296, 831, 858
HpaII CCGG 2 cut(s) 43, 92
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 6 cut(s) 287, 300, 641, 741, 835, 862
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 804
HpyAV CCTTC 4 cut(s) 349, 446, 466, 523
HpyCH4III ACNGT 3 cut(s) 98, 788, 807
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 5 cut(s) 162, 332, 483, 625, 633
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 539, 704
HpyF3I CTNAG 3 cut(s) 29, 699, 720
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 4 cut(s) 171, 406, 470, 927
Kzo9I GATC 6 cut(s) 48, 67, 176, 265, 394, 637
Lsp1109I GCAGC 3 cut(s) 414, 617, 694
LweI GCATC 2 cut(s) 271, 502
MaeI CTAG 5 cut(s) 140, 300, 372, 711, 741
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 132
MalI GATC 6 cut(s) 50, 69, 178, 267, 396, 639
MboI GATC 6 cut(s) 48, 67, 176, 265, 394, 637
MboII GAAGA 5 cut(s) 14, 84, 305, 538, 574
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 1 cut(s) 768
MluCI AATT 2 cut(s) 333, 594
MlyI GAGTC 3 cut(s) 305, 840, 867
MmeI TCCRAC 4 cut(s) 727, 796, 823, 895
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 2 cut(s) 252, 423
MspCI CTTAAG 1 cut(s) 422
MspI CCGG 2 cut(s) 43, 92
MspR9I CCNGG 3 cut(s) 92, 231, 769
MunI CAATTG 1 cut(s) 333
MvaI CCWGG 2 cut(s) 231, 769
MwoI GCNNNNNNNGC 3 cut(s) 204, 539, 704
NciI CCSGG 1 cut(s) 92
NdeII GATC 6 cut(s) 48, 67, 176, 265, 394, 637
NlaIII CATG 4 cut(s) 171, 406, 470, 927
NlaIV GGNNCC 1 cut(s) 766
NmuCI GTSAC 1 cut(s) 132
NspI RCATGY 1 cut(s) 470
NspV TTCGAA 1 cut(s) 114
PasI CCCWGGG 1 cut(s) 768
PciI ACATGT 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 5, 62, 239
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 4 cut(s) 429, 535, 632, 709
Ple19I CGATCG 1 cut(s) 70
PleI GAGTC 3 cut(s) 304, 839, 866
PpsI GAGTC 3 cut(s) 304, 839, 866
PscI ACATGT 1 cut(s) 466
PshBI ATTAAT 1 cut(s) 252
Psp1406I AACGTT 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 229, 767
PspGI CCWGG 2 cut(s) 229, 767
PspN4I GGNNCC 1 cut(s) 766
PspOMI GGGCCC 1 cut(s) 764
PspPI GGNCC 2 cut(s) 764, 765
PsuI RGATCY 1 cut(s) 637
PsyI GACNNNGTC 1 cut(s) 224
PvuI CGATCG 1 cut(s) 70
RsaI GTAC 5 cut(s) 173, 216, 235, 459, 572
RsaNI GTAC 5 cut(s) 172, 215, 234, 458, 571
SaqAI TTAA 2 cut(s) 252, 423
SatI GCNGC 4 cut(s) 428, 534, 631, 708
Sau3AI GATC 6 cut(s) 48, 67, 176, 265, 394, 637
Sau96I GGNCC 2 cut(s) 764, 765
ScaI AGTACT 1 cut(s) 459
SchI GAGTC 3 cut(s) 305, 840, 867
ScrFI CCNGG 3 cut(s) 92, 231, 769
SduI GDGCHC 1 cut(s) 768
SfaNI GCATC 2 cut(s) 271, 502
SfuI TTCGAA 1 cut(s) 114
SmlI CTYRAG 2 cut(s) 285, 422
SmoI CTYRAG 2 cut(s) 285, 422
Sse9I AATT 2 cut(s) 333, 594
SsiI CCGC 2 cut(s) 369, 533
SspMI CTAG 5 cut(s) 140, 300, 372, 711, 741
StyD4I CCNGG 3 cut(s) 90, 229, 767
TaaI ACNGT 3 cut(s) 98, 788, 807
TaiI ACGT 1 cut(s) 111
TaqI TCGA 5 cut(s) 70, 114, 179, 246, 675
TasI AATT 2 cut(s) 333, 594
TatI WGTACW 1 cut(s) 457
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 3 cut(s) 5, 62, 239
Tru1I TTAA 2 cut(s) 252, 423
Tru9I TTAA 2 cut(s) 252, 423
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 3 cut(s) 427, 630, 707
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 3 cut(s) 14, 75, 306
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 1 cut(s) 61
Tth111I GACNNNGTC 1 cut(s) 224
Vha464I CTTAAG 1 cut(s) 422
VspI ATTAAT 1 cut(s) 252
XbaI TCTAGA 2 cut(s) 299, 740
XceI RCATGY 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 5 cut(s) 140, 300, 372, 711, 741
ZrmI AGTACT 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.