Rw1G027810

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017673
Physical Location & Seq
Reverse (-)
55315521 .. 55316414
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027810.1

Sequence Viewer

Length: 855 bp
ATGGAATCAGACCTTGAGCTTCTCCATCTCAGTTCCAATCCCCAGAGGATCAGCGGTGATGGGTTCGATCGAAGATGGGAGGACTTGAACCCGGACTGTTTGGTCAACGTTTTCGAAAGAGTGGGAACTGGGTCACTTCTAGTCTCTGTCCCTTTCGTCTGCAAGTCATGGTACAGATCTAGCCTCAATCCTGCTTGCTGGCAACGCCTCATTGTACCAGACGATGCCCCAGGTACGGATTCTTTCGACATTAATGGGACTGATGATCTTTCCAGTTATGATGTTCAAGATGAAGAGGCTAGATTTAAGTACTTTGTAAGAAAAAGATTTGCACTTGAATTTCAACTTGATTTGCGGGGTTTCTCCACCGCTAGTTTTTTCAAGTTTCTGCCAACTGGCTCTTATGCTTTAGAAGTTGTACTGGAACATGTGAAGGAGAAATGCAAGAGTTTCTGTGGGTTGAATGTGTGTGATGCCGATATTGGGAAGAAGGCGGCATTGGCCATTGTCAAGTTTGTGCCGAAAATTAAGTACTTGTGGTTGAGGAGGGCGAGAATTGGTAGGCAGGGTCTTGTTACTTTATTGCAAGGCTGCAAGGACCTTGAACTTTTGGATGTTAGGGAGTGTAGTGGTTTTGATGAGGGGGATGAGGAAATAGCCGAGCTTGCTGCTAGTATTCCTAAGTTTATGTGTGAGGGTTCCAGAGTTGGACAGGGAGGAGGAGGGCAAAGGATCTTGTATGGATACCGATTTGGAGGGCGAAGAATCTTGTATGTCGGAGGAGGAAGACAAAGAGTCTTGAATGTCCAACGAGGAGAAGAACGAGTTGTGATGACATTAGAGGACAGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

284

Amino Acids

31.99

Weight (kDa)

5.9

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017673)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24920 FvH4_7g19290
rosa_chinensis RchiOBHm_Chr1g0363161
rosa_laevigata RLG00000027587
rosa_multiflora Rmu_sc0002925.1_g000002
rosa_roxburghii Rroxscaffold_4G00293400
rosa_rugosa Rorug01G0305200.1
rosa_samantha Rh1AG313900 Rh1BG277400 Rh1CG293800 Rh1DG307900
rosa_wichuraiana Rw1G027810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AciI CCGC 4 cut(s) 54, 355, 369, 494
AclI AACGTT 1 cut(s) 108
AclWI GGATC 2 cut(s) 56, 740
AcoI YGGCCR 1 cut(s) 501
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 6 cut(s) 173, 216, 235, 311, 420, 533
AfiI CCNNNNNNNGG 2 cut(s) 235, 483
AflIII ACRYGT 1 cut(s) 427
AgsI TTSAA 8 cut(s) 88, 287, 338, 344, 382, 463, 605, 802
AhdI GACNNNNNGTC 1 cut(s) 794
AjnI CCWGG 1 cut(s) 229
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
AluBI AGCT 2 cut(s) 19, 664
AluI AGCT 2 cut(s) 19, 664
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 2 cut(s) 56, 740
AoxI GGCC 1 cut(s) 501
ApeKI GCWGC 2 cut(s) 591, 668
ApoI RAATTY 1 cut(s) 338
AseI ATTAAT 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 598
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 68
AsuII TTCGAA 1 cut(s) 114
AvaII GGWCC 1 cut(s) 598
BalI TGGCCA 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 793
BbvI GCAGC 2 cut(s) 578, 655
BccI CCATC 3 cut(s) 33, 53, 69
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 1 cut(s) 231
BciVI GTATCC 1 cut(s) 737
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 5 cut(s) 140, 180, 300, 372, 672
BfuI GTATCC 1 cut(s) 737
BglII AGATCT 1 cut(s) 176
BisI GCNGC 3 cut(s) 495, 592, 669
BlsI GCNGC 3 cut(s) 496, 593, 670
BmcAI AGTACT 2 cut(s) 311, 533
Bme1390I CCNGG 2 cut(s) 92, 231
Bme18I GGWCC 1 cut(s) 598
BmeRI GACNNNNNGTC 1 cut(s) 794
BmgT120I GGNCC 1 cut(s) 598
BmiI GGNNCC 1 cut(s) 700
BmrFI CCNGG 2 cut(s) 92, 231
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 214, 463
BmuI ACTGGG 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 793
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 483
Bse1I ACTGG 4 cut(s) 133, 273, 400, 426
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 2 cut(s) 619, 652
BseLI CCNNNNNNNGG 2 cut(s) 235, 483
BseMII CTCAG 1 cut(s) 43
BseNI ACTGG 4 cut(s) 133, 273, 400, 426
BseRI GAGGAG 5 cut(s) 559, 732, 735, 795, 828
BseXI GCAGC 2 cut(s) 578, 655
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 503
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 2 cut(s) 134, 271
BslI CCNNNNNNNGG 2 cut(s) 235, 483
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 2 cut(s) 134, 271
BsnI GGCC 1 cut(s) 503
Bsp119I TTCGAA 1 cut(s) 114
Bsp143I GATC 5 cut(s) 48, 67, 176, 265, 732
BspACI CCGC 4 cut(s) 54, 355, 369, 494
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 700
BspPI GGATC 2 cut(s) 56, 740
BspT104I TTCGAA 1 cut(s) 114
BsrI ACTGG 4 cut(s) 133, 273, 400, 426
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 5 cut(s) 48, 67, 176, 265, 732
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 3 cut(s) 196, 200, 666
BstDEI CTNAG 2 cut(s) 29, 681
BstF5I GGATG 2 cut(s) 619, 652
BstKTI GATC 5 cut(s) 51, 70, 179, 268, 735
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 5 cut(s) 48, 67, 176, 265, 732
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 204, 500, 665
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 90, 229
BstV1I GCAGC 2 cut(s) 578, 655
BstV2I GAAGAC 1 cut(s) 793
BstX2I RGATCY 2 cut(s) 176, 732
BstYI RGATCY 2 cut(s) 176, 732
BsuI GTATCC 1 cut(s) 737
BsuRI GGCC 1 cut(s) 503
BtsCI GGATG 2 cut(s) 619, 652
Cac8I GCNNGC 3 cut(s) 196, 200, 666
Cfr13I GGNCC 1 cut(s) 598
Csp6I GTAC 6 cut(s) 172, 215, 234, 310, 419, 532
CviAII CATG 3 cut(s) 168, 428, 852
CviJI RGCY 8 cut(s) 19, 183, 299, 399, 503, 591, 659, 664
CviKI_1 RGCY 8 cut(s) 19, 183, 299, 399, 503, 591, 659, 664
CviQI GTAC 6 cut(s) 172, 215, 234, 310, 419, 532
DdeI CTNAG 2 cut(s) 29, 681
DpnI GATC 5 cut(s) 50, 69, 178, 267, 734
DpnII GATC 5 cut(s) 48, 67, 176, 265, 732
DrdI GACNNNNNNGTC 1 cut(s) 101
DriI GACNNNNNGTC 1 cut(s) 794
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 501
Eam1104I CTCTTC 1 cut(s) 288
Eam1105I GACNNNNNGTC 1 cut(s) 794
EarI CTCTTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 598
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 229
FaeI CATG 3 cut(s) 171, 431, 855
FaiI YATR 8 cut(s) 169, 279, 405, 429, 689, 741, 774, 853
FaqI GGGAC 2 cut(s) 134, 271
FatI CATG 3 cut(s) 167, 427, 851
FauI CCCGC 1 cut(s) 348
Fnu4HI GCNGC 3 cut(s) 495, 592, 669
FokI GGATG 2 cut(s) 626, 659
Fsp4HI GCNGC 3 cut(s) 495, 592, 669
FspBI CTAG 5 cut(s) 140, 180, 300, 372, 672
GluI GCNGC 3 cut(s) 495, 592, 669
HaeIII GGCC 1 cut(s) 503
HapII CCGG 1 cut(s) 92
Hin1II CATG 3 cut(s) 171, 431, 855
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 4 cut(s) 5, 239, 765, 795
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 10, 779
Hpy188III TCNNGA 3 cut(s) 287, 702, 799
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 427, 484
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 5 cut(s) 162, 332, 444, 586, 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 500, 665
HpyF3I CTNAG 2 cut(s) 29, 681
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 3 cut(s) 171, 431, 855
Kzo9I GATC 5 cut(s) 48, 67, 176, 265, 732
Lsp1109I GCAGC 2 cut(s) 578, 655
LweI GCATC 2 cut(s) 214, 463
MaeI CTAG 5 cut(s) 140, 180, 300, 372, 672
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 132, 574
MalI GATC 5 cut(s) 50, 69, 178, 267, 734
MboI GATC 5 cut(s) 48, 67, 176, 265, 732
MboII GAAGA 6 cut(s) 84, 305, 499, 774, 798, 830
MflI RGATCY 2 cut(s) 176, 732
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 3 cut(s) 338, 525, 555
MluNI TGGCCA 1 cut(s) 503
MlyI GAGTC 1 cut(s) 804
MmeI TCCRAC 3 cut(s) 688, 757, 832
Mox20I TGGCCA 1 cut(s) 503
MscI TGGCCA 1 cut(s) 503
MseI TTAA 3 cut(s) 252, 306, 528
Msp20I TGGCCA 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 92, 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 204, 500, 665
NciI CCSGG 1 cut(s) 92
NdeII GATC 5 cut(s) 48, 67, 176, 265, 732
NlaIII CATG 3 cut(s) 171, 431, 855
NlaIV GGNNCC 1 cut(s) 700
NmeAIII GCCGAG 1 cut(s) 685
NmuCI GTSAC 1 cut(s) 132
NspI RCATGY 1 cut(s) 431
NspV TTCGAA 1 cut(s) 114
PciI ACATGT 1 cut(s) 427
PfeI GAWTC 3 cut(s) 5, 239, 765
PkrI GCNGC 3 cut(s) 496, 593, 670
Ple19I CGATCG 1 cut(s) 70
PleI GAGTC 1 cut(s) 803
PpsI GAGTC 1 cut(s) 803
PpuMI RGGWCCY 1 cut(s) 598
PscI ACATGT 1 cut(s) 427
PshBI ATTAAT 1 cut(s) 252
Psp1406I AACGTT 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 700
PspPI GGNCC 1 cut(s) 598
PspPPI RGGWCCY 1 cut(s) 598
PsuI RGATCY 2 cut(s) 176, 732
PvuI CGATCG 1 cut(s) 70
RsaI GTAC 6 cut(s) 173, 216, 235, 311, 420, 533
RsaNI GTAC 6 cut(s) 172, 215, 234, 310, 419, 532
SaqAI TTAA 3 cut(s) 252, 306, 528
SatI GCNGC 3 cut(s) 495, 592, 669
Sau3AI GATC 5 cut(s) 48, 67, 176, 265, 732
Sau96I GGNCC 1 cut(s) 598
ScaI AGTACT 2 cut(s) 311, 533
SchI GAGTC 1 cut(s) 804
ScrFI CCNGG 2 cut(s) 92, 231
SetI ASST 6 cut(s) 15, 21, 111, 235, 603, 666
SfaNI GCATC 2 cut(s) 214, 463
SfuI TTCGAA 1 cut(s) 114
SinI GGWCC 1 cut(s) 598
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 3 cut(s) 338, 525, 555
SsiI CCGC 4 cut(s) 54, 355, 369, 494
SspMI CTAG 5 cut(s) 140, 180, 300, 372, 672
StyD4I CCNGG 2 cut(s) 90, 229
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 111
TaqI TCGA 4 cut(s) 66, 70, 114, 246
TasI AATT 3 cut(s) 338, 525, 555
TatI WGTACW 3 cut(s) 309, 418, 531
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 3 cut(s) 5, 239, 765
Tru1I TTAA 3 cut(s) 252, 306, 528
Tru9I TTAA 3 cut(s) 252, 306, 528
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 2 cut(s) 591, 668
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 306
TspGWI ACGGA 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 598
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 1 cut(s) 338
XceI RCATGY 1 cut(s) 431
XspI CTAG 5 cut(s) 140, 180, 300, 372, 672
ZrmI AGTACT 2 cut(s) 311, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.