Rh1CG293800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017673
Physical Location & Seq
Reverse (-)
56656531 .. 56658244
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG293800.1

Sequence Viewer

Length: 939 bp
ATGTCTGCAACTCCCCCAGAAGAAGCAGAAGACCAAAACCCCACCATGGAATCAGACCTTGAGCTTCTCCATCTCAGTTCCAACCCCCAGAGGATCAGCGGTGAAGGGTTCGATCGAAGATGGGAGGACTTGAACCCGGACTGTTTGGTCAACGTTTTCGAAAGAGTGGGAACTGGGTCACTTCTAGTCTCTGTCCCTTTCGTCTGCAAGTCATGGTACAGATCTAGCCTCAATCCTGCTTGCTGGCAACGCCTCATTGTACCAGACGATGCCCCAGGTACGGATTCTTTCGACATTAATGGGACTGATGATCTTTCCAGTTATGATGTTCAAGATGAAGAGGCTAGATTTAAGTACTTTGTAAGAAAAAGATTTGCAATTGAATTTCAACTTGATTTGCGGGGTTTCTCCACCGCTAGTTTTTTCAAGTTTGTGATTGATCGTAGCATGGGAAATGTGAAGTTTCTTAAGCTGCCAACTGGCTCTTATGCTTTAGAAGTTGTACTGGAACATGTGAAGGAGAAATGCAAGAGTTTCTGTGGGTTGAATGTGTGTGATGCCGATATTGGGAAGAAGGCGGCATTGGCCATTGTCAAGTTTGTGCCGAAAATTAAGTACTTGTGGTTGAGGAGGGCGAGAATTGGTAGGCAGGGTCTTGTTACTTTATTGCAAGGCTGCAAGGACCTTGAACTTTTGGATGTTAGGGAGTGTAGTGGTTTTGATGAGGGGGATGAGGAAATAGCCGAGCTTGCTGCTAGTATTCCTAAGTTTATGTGTGAGGGTTCCAGAGTTGGACAGGGAGGAGGAGGGCAAAGGATCTTGTATGGATACCGATTTGGAGGGCGAAGAATCTTGTATGTCGGAGGAGGAAGACAAAGAGTCTTGAATGTCCAACGAGGAGAAGAACGAGTTGTGATGACATTAGAGGACAGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

312

Amino Acids

35.09

Weight (kDa)

5.53

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017673)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24920 FvH4_7g19290
rosa_chinensis RchiOBHm_Chr1g0363161
rosa_laevigata RLG00000027587
rosa_multiflora Rmu_sc0002925.1_g000002
rosa_roxburghii Rroxscaffold_4G00293400
rosa_rugosa Rorug01G0305200.1
rosa_samantha Rh1AG313900 Rh1BG277400 Rh1CG293800 Rh1DG307900
rosa_wichuraiana Rw1G027810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AciI CCGC 4 cut(s) 99, 400, 414, 578
AclI AACGTT 1 cut(s) 153
AclWI GGATC 2 cut(s) 101, 824
AcoI YGGCCR 1 cut(s) 585
AcsI RAATTY 1 cut(s) 383
AfaI GTAC 6 cut(s) 218, 261, 280, 356, 504, 617
AfiI CCNNNNNNNGG 3 cut(s) 46, 280, 567
AflII CTTAAG 1 cut(s) 467
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 8 cut(s) 133, 332, 383, 389, 427, 547, 689, 886
AhdI GACNNNNNGTC 1 cut(s) 878
AjnI CCWGG 1 cut(s) 274
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
AluBI AGCT 3 cut(s) 64, 472, 748
AluI AGCT 3 cut(s) 64, 472, 748
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 2 cut(s) 101, 824
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 3 cut(s) 472, 675, 752
ApoI RAATTY 1 cut(s) 383
AseI ATTAAT 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 682
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 159
AvaII GGWCC 1 cut(s) 682
BalI TGGCCA 1 cut(s) 587
BbsI GAAGAC 2 cut(s) 36, 877
BbvI GCAGC 3 cut(s) 459, 662, 739
BccI CCATC 2 cut(s) 78, 114
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BciT130I CCWGG 1 cut(s) 276
BciVI GTATCC 1 cut(s) 821
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 5 cut(s) 185, 225, 345, 417, 756
BfrI CTTAAG 1 cut(s) 467
BfuI GTATCC 1 cut(s) 821
BglII AGATCT 1 cut(s) 221
BisI GCNGC 4 cut(s) 473, 579, 676, 753
BlsI GCNGC 4 cut(s) 474, 580, 677, 754
BmcAI AGTACT 2 cut(s) 356, 617
Bme1390I CCNGG 2 cut(s) 137, 276
Bme18I GGWCC 1 cut(s) 682
BmeRI GACNNNNNGTC 1 cut(s) 878
BmgT120I GGNCC 1 cut(s) 682
BmiI GGNNCC 1 cut(s) 784
BmrFI CCNGG 2 cut(s) 137, 276
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 2 cut(s) 259, 547
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 36, 877
Bpu14I TTCGAA 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 45, 274
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 280, 567
Bse1I ACTGG 4 cut(s) 178, 318, 484, 510
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 45, 274
BseGI GGATG 2 cut(s) 703, 736
BseLI CCNNNNNNNGG 3 cut(s) 46, 280, 567
BseMII CTCAG 1 cut(s) 88
BseNI ACTGG 4 cut(s) 178, 318, 484, 510
BseRI GAGGAG 5 cut(s) 643, 816, 819, 879, 912
BseXI GCAGC 3 cut(s) 459, 662, 739
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 1 cut(s) 587
BsiEI CGRYCG 1 cut(s) 115
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 2 cut(s) 179, 316
BslI CCNNNNNNNGG 3 cut(s) 46, 280, 567
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 2 cut(s) 179, 316
BsnI GGCC 1 cut(s) 587
Bsp119I TTCGAA 1 cut(s) 159
Bsp143I GATC 6 cut(s) 93, 112, 221, 310, 439, 816
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 4 cut(s) 99, 400, 414, 578
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 784
BspPI GGATC 2 cut(s) 101, 824
BspT104I TTCGAA 1 cut(s) 159
BspTI CTTAAG 1 cut(s) 467
BsrI ACTGG 4 cut(s) 178, 318, 484, 510
BssECI CCNNGG 2 cut(s) 45, 274
BssMI GATC 6 cut(s) 93, 112, 221, 310, 439, 816
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 333
BstAFI CTTAAG 1 cut(s) 467
BstBI TTCGAA 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 241, 245, 750
BstDEI CTNAG 2 cut(s) 74, 765
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 703, 736
BstKTI GATC 6 cut(s) 96, 115, 224, 313, 442, 819
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 6 cut(s) 93, 112, 221, 310, 439, 816
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 3 cut(s) 249, 584, 749
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 2 cut(s) 135, 274
BstV1I GCAGC 3 cut(s) 459, 662, 739
BstV2I GAAGAC 2 cut(s) 36, 877
BstX2I RGATCY 2 cut(s) 221, 816
BstYI RGATCY 2 cut(s) 221, 816
BsuI GTATCC 1 cut(s) 821
BsuRI GGCC 1 cut(s) 587
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 703, 736
Cac8I GCNNGC 3 cut(s) 241, 245, 750
Cfr13I GGNCC 1 cut(s) 682
Csp6I GTAC 6 cut(s) 217, 260, 279, 355, 503, 616
CviAII CATG 5 cut(s) 46, 213, 448, 512, 936
CviJI RGCY 9 cut(s) 64, 228, 344, 472, 483, 587, 675, 743, 748
CviKI_1 RGCY 9 cut(s) 64, 228, 344, 472, 483, 587, 675, 743, 748
CviQI GTAC 6 cut(s) 217, 260, 279, 355, 503, 616
DdeI CTNAG 2 cut(s) 74, 765
DpnI GATC 6 cut(s) 95, 114, 223, 312, 441, 818
DpnII GATC 6 cut(s) 93, 112, 221, 310, 439, 816
DrdI GACNNNNNNGTC 1 cut(s) 146
DriI GACNNNNNGTC 1 cut(s) 878
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 1 cut(s) 333
Eam1105I GACNNNNNGTC 1 cut(s) 878
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 682
EcoO109I RGGNCCY 1 cut(s) 682
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 5 cut(s) 49, 216, 451, 515, 939
FaqI GGGAC 2 cut(s) 179, 316
FatI CATG 5 cut(s) 45, 212, 447, 511, 935
FauI CCCGC 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 473, 579, 676, 753
FokI GGATG 2 cut(s) 710, 743
Fsp4HI GCNGC 4 cut(s) 473, 579, 676, 753
FspBI CTAG 5 cut(s) 185, 225, 345, 417, 756
GluI GCNGC 4 cut(s) 473, 579, 676, 753
HaeIII GGCC 1 cut(s) 587
HapII CCGG 1 cut(s) 137
Hin1II CATG 5 cut(s) 49, 216, 451, 515, 939
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 4 cut(s) 50, 284, 849, 879
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 55, 863
Hpy188III TCNNGA 3 cut(s) 332, 786, 883
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 3 cut(s) 98, 511, 568
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 6 cut(s) 8, 207, 377, 528, 670, 678
HpyF10VI GCNNNNNNNGC 3 cut(s) 249, 584, 749
HpyF3I CTNAG 2 cut(s) 74, 765
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 5 cut(s) 49, 216, 451, 515, 939
Kzo9I GATC 6 cut(s) 93, 112, 221, 310, 439, 816
Lsp1109I GCAGC 3 cut(s) 459, 662, 739
LweI GCATC 2 cut(s) 259, 547
MaeI CTAG 5 cut(s) 185, 225, 345, 417, 756
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 177, 658
MalI GATC 6 cut(s) 95, 114, 223, 312, 441, 818
MboI GATC 6 cut(s) 93, 112, 221, 310, 439, 816
MboII GAAGA 8 cut(s) 32, 41, 129, 350, 583, 858, 882, 914
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 2 cut(s) 221, 816
MlsI TGGCCA 1 cut(s) 587
MluCI AATT 4 cut(s) 378, 383, 609, 639
MluNI TGGCCA 1 cut(s) 587
MlyI GAGTC 1 cut(s) 888
MmeI TCCRAC 4 cut(s) 105, 772, 841, 916
Mox20I TGGCCA 1 cut(s) 587
MscI TGGCCA 1 cut(s) 587
MseI TTAA 4 cut(s) 297, 351, 468, 612
Msp20I TGGCCA 1 cut(s) 587
MspA1I CMGCKG 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 467
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 2 cut(s) 137, 276
MunI CAATTG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 249, 584, 749
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 45
NdeII GATC 6 cut(s) 93, 112, 221, 310, 439, 816
NlaIII CATG 5 cut(s) 49, 216, 451, 515, 939
NlaIV GGNNCC 1 cut(s) 784
NmeAIII GCCGAG 1 cut(s) 769
NmuCI GTSAC 1 cut(s) 177
NspI RCATGY 1 cut(s) 515
NspV TTCGAA 1 cut(s) 159
PciI ACATGT 1 cut(s) 511
PfeI GAWTC 3 cut(s) 50, 284, 849
PkrI GCNGC 4 cut(s) 474, 580, 677, 754
Ple19I CGATCG 1 cut(s) 115
PleI GAGTC 1 cut(s) 887
PpsI GAGTC 1 cut(s) 887
PpuMI RGGWCCY 1 cut(s) 682
PscI ACATGT 1 cut(s) 511
PshBI ATTAAT 1 cut(s) 297
Psp1406I AACGTT 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 682
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 784
PspPI GGNCC 1 cut(s) 682
PspPPI RGGWCCY 1 cut(s) 682
PsuI RGATCY 2 cut(s) 221, 816
PvuI CGATCG 1 cut(s) 115
RsaI GTAC 6 cut(s) 218, 261, 280, 356, 504, 617
RsaNI GTAC 6 cut(s) 217, 260, 279, 355, 503, 616
SaqAI TTAA 4 cut(s) 297, 351, 468, 612
SatI GCNGC 4 cut(s) 473, 579, 676, 753
Sau3AI GATC 6 cut(s) 93, 112, 221, 310, 439, 816
Sau96I GGNCC 1 cut(s) 682
ScaI AGTACT 2 cut(s) 356, 617
SchI GAGTC 1 cut(s) 888
ScrFI CCNGG 2 cut(s) 137, 276
SetI ASST 7 cut(s) 60, 66, 156, 280, 474, 687, 750
SfaNI GCATC 2 cut(s) 259, 547
SfuI TTCGAA 1 cut(s) 159
SinI GGWCC 1 cut(s) 682
SmlI CTYRAG 2 cut(s) 59, 467
SmoI CTYRAG 2 cut(s) 59, 467
Sse9I AATT 4 cut(s) 378, 383, 609, 639
SsiI CCGC 4 cut(s) 99, 400, 414, 578
SspMI CTAG 5 cut(s) 185, 225, 345, 417, 756
StyD4I CCNGG 2 cut(s) 135, 274
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 156
TaqI TCGA 4 cut(s) 111, 115, 159, 291
TasI AATT 4 cut(s) 378, 383, 609, 639
TatI WGTACW 3 cut(s) 354, 502, 615
TauI GCSGC 1 cut(s) 581
TfiI GAWTC 3 cut(s) 50, 284, 849
Tru1I TTAA 4 cut(s) 297, 351, 468, 612
Tru9I TTAA 4 cut(s) 297, 351, 468, 612
TseFI GTSAC 1 cut(s) 177
TseI GCWGC 3 cut(s) 472, 675, 752
Tsp45I GTSAC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 351
TspGWI ACGGA 1 cut(s) 296
Vha464I CTTAAG 1 cut(s) 467
VpaK11BI GGWCC 1 cut(s) 682
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 1 cut(s) 383
XceI RCATGY 1 cut(s) 515
XspI CTAG 5 cut(s) 185, 225, 345, 417, 756
ZrmI AGTACT 2 cut(s) 356, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.