RLG00000027587

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017673
Physical Location & Seq
Forward (+)
12961807 .. 12962751
945 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027587

Sequence Viewer

Length: 945 bp
ATGCCTGCAACTCCCCCAGAAGAAGCAGAAGCAGAAGACCAAAACCCCACCATGGAATCAGACCTTGAGCTTCTCCATCTCAGTTCCAATCCCCAGAGGATCAGCGGTGATGGGTTCGATCGAAAATGGGAGGACTTGAACCCGGACTGTCTGGTCAACGTTTTCGAAAGGGTGGGAACTGGGTCACTTCTAGTCTCTGTCCCTTTCGTCTGCAAGTCATGGTACAGATCTAGCCTCAATCCTGCTTGCTGGCAACGCCTCATTGTACCAGACGATGTCCCAGGTACGGATTCTTTCGACATTAATGGGACTGTTGATCTTTCAAGTTATGATGTTCAAGATGAAGAGGCTAGATTTAAGTACTTTGTAAGAAAAAGATTTGCAATTGAATTTCAACTTGATTTGCGGGGTTTCTCCACCGCTAGTTTTTTCAAGTTTGTGATTGATCGTAGCATGGGAAATGTGAAGTTTCTTAAGCTGCCTACTGGCTCTTATGCTTTAGAAGTAGTACTTGAACATGTGAAGGAGAAATGCAAGAGTTTCTGTGGGTTGAATGTGTGTGATGCCGATATTGGGAAGAAGGCGGCATCGGCCATTGTCAAGTTTGCGCCGAAAATTAAGTACTTGTGGTTGAGGAGGGCGAGAATTGGTAGGCAGGGTCTTGTTACTTTATTGCAAGGCTGCAAGGACCTTGAACTTTTGGATGTTAGGGAGTGTAGTGGTTTCGATGAGGGGGATGAGGAAATAGCCGAGCTTGCTGCTAGTATTCCTAAGTTTATGTGTGAGGGTTCGAGAGTTGGACAGGGAGGAGGAGGGCAAAGGATCTTGTATGGATACCGATTTGGAGGGCGACGAATCTTGTATGTCGGAGGAGGAAGACAAAGAGTCTTGAATGTCCAACGAGGAGGAGAACGAGTTGTGATGACATTAGAGGACAGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

315

Amino Acids

35.15

Weight (kDa)

5.69

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017673)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24920 FvH4_7g19290
rosa_chinensis RchiOBHm_Chr1g0363161
rosa_laevigata RLG00000027587
rosa_multiflora Rmu_sc0002925.1_g000002
rosa_roxburghii Rroxscaffold_4G00293400
rosa_rugosa Rorug01G0305200.1
rosa_samantha Rh1AG313900 Rh1BG277400 Rh1CG293800 Rh1DG307900
rosa_wichuraiana Rw1G027810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AciI CCGC 4 cut(s) 105, 406, 420, 584
AclI AACGTT 1 cut(s) 159
AclWI GGATC 2 cut(s) 107, 830
AcoI YGGCCR 1 cut(s) 591
AcsI RAATTY 1 cut(s) 389
AfaI GTAC 6 cut(s) 224, 267, 286, 362, 510, 623
AfiI CCNNNNNNNGG 3 cut(s) 52, 286, 573
AflII CTTAAG 1 cut(s) 473
AflIII ACRYGT 1 cut(s) 517
AhdI GACNNNNNGTC 1 cut(s) 884
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 3 cut(s) 70, 478, 754
AluI AGCT 3 cut(s) 70, 478, 754
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 2 cut(s) 107, 830
AoxI GGCC 1 cut(s) 591
ApeKI GCWGC 3 cut(s) 478, 681, 758
ApoI RAATTY 1 cut(s) 389
AseI ATTAAT 1 cut(s) 303
AspLEI GCGC 1 cut(s) 610
AspS9I GGNCC 1 cut(s) 688
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 119
AsuII TTCGAA 1 cut(s) 165
AvaII GGWCC 1 cut(s) 688
BbsI GAAGAC 2 cut(s) 42, 883
BbvI GCAGC 3 cut(s) 465, 668, 745
BccI CCATC 2 cut(s) 84, 104
BcgI CGANNNNNNTGC 2 cut(s) 740, 774
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 1 cut(s) 827
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 5 cut(s) 191, 231, 351, 423, 762
BfrI CTTAAG 1 cut(s) 473
BfuI GTATCC 1 cut(s) 827
BglII AGATCT 1 cut(s) 227
BisI GCNGC 4 cut(s) 479, 585, 682, 759
BlsI GCNGC 4 cut(s) 480, 586, 683, 760
BmcAI AGTACT 3 cut(s) 362, 510, 623
Bme1390I CCNGG 2 cut(s) 143, 282
Bme18I GGWCC 1 cut(s) 688
BmeRI GACNNNNNGTC 1 cut(s) 884
BmgT120I GGNCC 1 cut(s) 688
BmrFI CCNGG 2 cut(s) 143, 282
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 2 cut(s) 553, 596
BmuI ACTGGG 1 cut(s) 189
BpiI GAAGAC 2 cut(s) 42, 883
Bpu14I TTCGAA 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 51, 280
BsaXI ACNNNNNCTCC 2 cut(s) 900, 930
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 286, 573
Bse1I ACTGG 2 cut(s) 184, 490
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 51, 280
BseGI GGATG 2 cut(s) 709, 742
BseLI CCNNNNNNNGG 3 cut(s) 52, 286, 573
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 2 cut(s) 184, 490
BseRI GAGGAG 6 cut(s) 649, 822, 825, 885, 918, 921
BseXI GCAGC 3 cut(s) 465, 668, 745
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 593
BsiEI CGRYCG 1 cut(s) 121
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 3 cut(s) 185, 263, 322
BslI CCNNNNNNNGG 3 cut(s) 52, 286, 573
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 3 cut(s) 185, 263, 322
BsnI GGCC 1 cut(s) 593
Bsp119I TTCGAA 1 cut(s) 165
Bsp143I GATC 6 cut(s) 99, 118, 227, 316, 445, 822
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 4 cut(s) 105, 406, 420, 584
BspANI GGCC 1 cut(s) 593
BspCNI CTCAG 1 cut(s) 93
BspPI GGATC 2 cut(s) 107, 830
BspT104I TTCGAA 1 cut(s) 165
BspTI CTTAAG 1 cut(s) 473
BsrI ACTGG 2 cut(s) 184, 490
BssECI CCNNGG 2 cut(s) 51, 280
BssMI GATC 6 cut(s) 99, 118, 227, 316, 445, 822
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 149, 313
Bst6I CTCTTC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 165
BstC8I GCNNGC 4 cut(s) 6, 247, 251, 756
BstDEI CTNAG 2 cut(s) 80, 771
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 709, 742
BstHHI GCGC 1 cut(s) 610
BstKTI GATC 6 cut(s) 102, 121, 230, 319, 448, 825
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 6 cut(s) 99, 118, 227, 316, 445, 822
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 3 cut(s) 255, 590, 755
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 141, 280
BstV1I GCAGC 3 cut(s) 465, 668, 745
BstV2I GAAGAC 2 cut(s) 42, 883
BstX2I RGATCY 2 cut(s) 227, 822
BstYI RGATCY 2 cut(s) 227, 822
BsuI GTATCC 1 cut(s) 827
BsuRI GGCC 1 cut(s) 593
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 709, 742
Cac8I GCNNGC 4 cut(s) 6, 247, 251, 756
CfoI GCGC 1 cut(s) 610
Cfr13I GGNCC 1 cut(s) 688
Csp6I GTAC 6 cut(s) 223, 266, 285, 361, 509, 622
CviAII CATG 5 cut(s) 52, 219, 454, 518, 942
CviJI RGCY 9 cut(s) 70, 234, 350, 478, 489, 593, 681, 749, 754
CviKI_1 RGCY 9 cut(s) 70, 234, 350, 478, 489, 593, 681, 749, 754
CviQI GTAC 6 cut(s) 223, 266, 285, 361, 509, 622
DdeI CTNAG 2 cut(s) 80, 771
DpnI GATC 6 cut(s) 101, 120, 229, 318, 447, 824
DpnII GATC 6 cut(s) 99, 118, 227, 316, 445, 822
DrdI GACNNNNNNGTC 1 cut(s) 152
DriI GACNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 591
Eam1104I CTCTTC 1 cut(s) 339
Eam1105I GACNNNNNGTC 1 cut(s) 884
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 688
EcoO109I RGGNCCY 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 5 cut(s) 55, 222, 457, 521, 945
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FaqI GGGAC 3 cut(s) 185, 263, 322
FatI CATG 5 cut(s) 51, 218, 453, 517, 941
FauI CCCGC 1 cut(s) 399
Fnu4HI GCNGC 4 cut(s) 479, 585, 682, 759
FokI GGATG 2 cut(s) 716, 749
Fsp4HI GCNGC 4 cut(s) 479, 585, 682, 759
FspBI CTAG 5 cut(s) 191, 231, 351, 423, 762
GlaI GCGC 1 cut(s) 609
GluI GCNGC 4 cut(s) 479, 585, 682, 759
HaeIII GGCC 1 cut(s) 593
HapII CCGG 1 cut(s) 143
HhaI GCGC 1 cut(s) 610
Hin1II CATG 5 cut(s) 55, 222, 457, 521, 945
Hin6I GCGC 1 cut(s) 608
HinP1I GCGC 1 cut(s) 608
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 4 cut(s) 56, 290, 855, 885
HpaII CCGG 1 cut(s) 143
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 61, 869
Hpy188III TCNNGA 3 cut(s) 338, 792, 889
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 855
HpyAV CCTTC 2 cut(s) 517, 574
HpyCH4III ACNGT 2 cut(s) 149, 313
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 6 cut(s) 8, 213, 383, 534, 676, 684
HpyF10VI GCNNNNNNNGC 3 cut(s) 255, 590, 755
HpyF3I CTNAG 2 cut(s) 80, 771
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 5 cut(s) 55, 222, 457, 521, 945
HspAI GCGC 1 cut(s) 608
Kzo9I GATC 6 cut(s) 99, 118, 227, 316, 445, 822
Lsp1109I GCAGC 3 cut(s) 465, 668, 745
LweI GCATC 2 cut(s) 553, 596
MaeI CTAG 5 cut(s) 191, 231, 351, 423, 762
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 183, 664
MalI GATC 6 cut(s) 101, 120, 229, 318, 447, 824
MboI GATC 6 cut(s) 99, 118, 227, 316, 445, 822
MboII GAAGA 5 cut(s) 32, 47, 356, 589, 888
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 2 cut(s) 227, 822
MluCI AATT 4 cut(s) 384, 389, 615, 645
MlyI GAGTC 1 cut(s) 894
MmeI TCCRAC 3 cut(s) 778, 847, 922
MseI TTAA 4 cut(s) 303, 357, 474, 618
MspA1I CMGCKG 1 cut(s) 105
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 143, 282
MunI CAATTG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 255, 590, 755
NciI CCSGG 1 cut(s) 143
NcoI CCATGG 1 cut(s) 51
NdeII GATC 6 cut(s) 99, 118, 227, 316, 445, 822
NlaIII CATG 5 cut(s) 55, 222, 457, 521, 945
NmeAIII GCCGAG 1 cut(s) 775
NmuCI GTSAC 1 cut(s) 183
NspI RCATGY 1 cut(s) 521
NspV TTCGAA 1 cut(s) 165
PciI ACATGT 1 cut(s) 517
PfeI GAWTC 3 cut(s) 56, 290, 855
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 4 cut(s) 480, 586, 683, 760
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 1 cut(s) 893
PpsI GAGTC 1 cut(s) 893
PpuMI RGGWCCY 1 cut(s) 688
PscI ACATGT 1 cut(s) 517
PshBI ATTAAT 1 cut(s) 303
Psp1406I AACGTT 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 688
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspPI GGNCC 1 cut(s) 688
PspPPI RGGWCCY 1 cut(s) 688
PsuI RGATCY 2 cut(s) 227, 822
PsyI GACNNNGTC 1 cut(s) 275
PvuI CGATCG 1 cut(s) 121
RsaI GTAC 6 cut(s) 224, 267, 286, 362, 510, 623
RsaNI GTAC 6 cut(s) 223, 266, 285, 361, 509, 622
SaqAI TTAA 4 cut(s) 303, 357, 474, 618
SatI GCNGC 4 cut(s) 479, 585, 682, 759
Sau3AI GATC 6 cut(s) 99, 118, 227, 316, 445, 822
Sau96I GGNCC 1 cut(s) 688
ScaI AGTACT 3 cut(s) 362, 510, 623
SchI GAGTC 1 cut(s) 894
ScrFI CCNGG 2 cut(s) 143, 282
SetI ASST 7 cut(s) 66, 72, 162, 286, 480, 693, 756
SfaNI GCATC 2 cut(s) 553, 596
SfuI TTCGAA 1 cut(s) 165
SinI GGWCC 1 cut(s) 688
SmlI CTYRAG 2 cut(s) 65, 473
SmoI CTYRAG 2 cut(s) 65, 473
Sse9I AATT 4 cut(s) 384, 389, 615, 645
SsiI CCGC 4 cut(s) 105, 406, 420, 584
SspMI CTAG 5 cut(s) 191, 231, 351, 423, 762
StyD4I CCNGG 2 cut(s) 141, 280
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 149, 313
TaiI ACGT 1 cut(s) 162
TaqI TCGA 6 cut(s) 117, 121, 165, 297, 726, 791
TasI AATT 4 cut(s) 384, 389, 615, 645
TatI WGTACW 3 cut(s) 360, 508, 621
TauI GCSGC 1 cut(s) 587
TfiI GAWTC 3 cut(s) 56, 290, 855
Tru1I TTAA 4 cut(s) 303, 357, 474, 618
Tru9I TTAA 4 cut(s) 303, 357, 474, 618
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 3 cut(s) 478, 681, 758
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 1 cut(s) 302
Tth111I GACNNNGTC 1 cut(s) 275
Vha464I CTTAAG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 688
VspI ATTAAT 1 cut(s) 303
XapI RAATTY 1 cut(s) 389
XceI RCATGY 1 cut(s) 521
XspI CTAG 5 cut(s) 191, 231, 351, 423, 762
ZrmI AGTACT 3 cut(s) 362, 510, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.