Rroxscaffold_4G00293400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017673
Physical Location & Seq
Forward (+)
13702933 .. 13703868
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293400.1

Sequence Viewer

Length: 936 bp
ATGTCTGCAAACTCCTCGGAAGAAGCAGAAGCAGAAGACCAAAACCCCACCATGGAATCAGACCTTGAGCTTCTCCATATCAGTTCCAATCCCCAGAGGATCAGCGGTGATGGGTTCAACCGAAGATGGGAGGACTTGAACCCCGACTGTTTGGTCAACGTTTTCGAAAGAGTGGGAACTGGGTCACTTCTAGTCTCTGTCCCTTTCGTCTGCAAGTCCTGGTACAGATCGAGCCGCGATCCAGCTTGCTGGCAACGCCTCATTGTACCAGACGATGTCCCAGGTACGGATTCTTTCGACATTAATGGGACTGATGATCAACATGAAGAGGATAGATTTGAGTACTTTGTAAGAAAAAGATTTGCAGTTCAATCCCAACCTGATTTGCGGGGTTTCCCCACCGCTAGTTTTTTCAAGTTTGTGATTGATCGTAGCATGGGAAATGTGAAGTTTCTTAAGCTGCCTACTGGCTCTGATGCTTTAGAATTAGAACTGGTACTTGAACATGTGAAGGAGAAATGCAAGAGTTTCTGTGGGTTGAATGTGTGTGGTGCCGATATTGGGAAGAAGGCGGCATCCGCCATTGTCAAGTTTGTTCCGAAAATTAAGTACTTGTGGTTGAGGAGGGCGAAAATTGGTAGGCAGGGTCTTGTTACTTTATTGCAAGGCTGCAAGGACATTGAACTTTTGGATGTTAGGGAGTGTAGTGGTTTCGATGAGGGGGATGAGGAAATAGCCGATCTTGCTGCTAGTATTCCTAGGTTTATGTGTGAGGGTTCTACAGTTGGACAGGGAGGAGGAGGGCAAAGTTTCTTGTCTGGAGGGCGACTAGTCTTGCATGTCAGACGAGGAAGACGGAGACTGAGGAGGGTCCAACAAGGAGGAGGACGAGTTGTGATGAGATTAGATGACAGAGAAATAATCTGGCGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

311

Amino Acids

34.98

Weight (kDa)

6.48

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017673)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24920 FvH4_7g19290
rosa_chinensis RchiOBHm_Chr1g0363161
rosa_laevigata RLG00000027587
rosa_multiflora Rmu_sc0002925.1_g000002
rosa_roxburghii Rroxscaffold_4G00293400
rosa_rugosa Rorug01G0305200.1
rosa_samantha Rh1AG313900 Rh1BG277400 Rh1CG293800 Rh1DG307900
rosa_wichuraiana Rw1G027810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 551
AccII CGCG 1 cut(s) 237
AciI CCGC 6 cut(s) 105, 235, 388, 402, 572, 579
AclI AACGTT 1 cut(s) 159
AclWI GGATC 2 cut(s) 107, 233
AfaI GTAC 6 cut(s) 224, 267, 286, 344, 498, 611
AfiI CCNNNNNNNGG 4 cut(s) 52, 127, 286, 561
AflII CTTAAG 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 505
AgsI TTSAA 7 cut(s) 118, 139, 371, 415, 503, 541, 683
AhlI ACTAGT 1 cut(s) 829
AjnI CCWGG 2 cut(s) 218, 280
AluBI AGCT 3 cut(s) 70, 245, 460
AluI AGCT 3 cut(s) 70, 245, 460
Alw26I GTCTC 2 cut(s) 199, 853
AlwI GGATC 2 cut(s) 107, 233
ApeKI GCWGC 3 cut(s) 460, 669, 746
AseI ATTAAT 1 cut(s) 303
AspA2I CCTAGG 1 cut(s) 758
AspS9I GGNCC 1 cut(s) 871
AsuHPI GGTGA 1 cut(s) 119
AsuII TTCGAA 1 cut(s) 165
AvaII GGWCC 1 cut(s) 871
AvrII CCTAGG 1 cut(s) 758
BanI GGYRCC 1 cut(s) 551
BbsI GAAGAC 2 cut(s) 42, 859
BbvI GCAGC 3 cut(s) 447, 656, 733
BccI CCATC 2 cut(s) 104, 120
BcgI CGANNNNNNTGC 3 cut(s) 31, 728, 762
BciT130I CCWGG 2 cut(s) 220, 282
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 2 cut(s) 199, 853
BcuI ACTAGT 1 cut(s) 829
BfaI CTAG 5 cut(s) 191, 405, 750, 759, 830
BfmI CTRYAG 1 cut(s) 780
BfrI CTTAAG 1 cut(s) 455
BisI GCNGC 5 cut(s) 235, 461, 573, 670, 747
BlnI CCTAGG 1 cut(s) 758
BlsI GCNGC 5 cut(s) 236, 462, 574, 671, 748
BmcAI AGTACT 2 cut(s) 344, 611
Bme1390I CCNGG 2 cut(s) 220, 282
Bme18I GGWCC 1 cut(s) 871
BmgT120I GGNCC 1 cut(s) 871
BmiI GGNNCC 2 cut(s) 553, 872
BmrFI CCNGG 2 cut(s) 220, 282
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 2 cut(s) 466, 584
BmuI ACTGGG 1 cut(s) 189
BpiI GAAGAC 2 cut(s) 42, 859
BpmI CTGGAG 1 cut(s) 840
Bpu14I TTCGAA 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 86
BsaJI CCNNGG 4 cut(s) 15, 51, 280, 758
BsaXI ACNNNNNCTCC 2 cut(s) 876, 906
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 127, 286, 561
Bse1I ACTGG 3 cut(s) 184, 472, 498
BseBI CCWGG 2 cut(s) 220, 282
BseDI CCNNGG 4 cut(s) 15, 51, 280, 758
BseGI GGATG 3 cut(s) 575, 697, 730
BseLI CCNNNNNNNGG 4 cut(s) 52, 127, 286, 561
BseMII CTCAG 1 cut(s) 854
BseNI ACTGG 3 cut(s) 184, 472, 498
BseRI GAGGAG 6 cut(s) 4, 637, 810, 813, 880, 897
BseXI GCAGC 3 cut(s) 447, 656, 733
Bsh1236I CGCG 1 cut(s) 237
BshNI GGYRCC 1 cut(s) 551
BslFI GGGAC 3 cut(s) 185, 263, 322
BslI CCNNNNNNNGG 4 cut(s) 52, 127, 286, 561
BsmAI GTCTC 2 cut(s) 199, 853
BsmFI GGGAC 3 cut(s) 185, 263, 322
Bsp119I TTCGAA 1 cut(s) 165
Bsp143I GATC 6 cut(s) 99, 227, 238, 316, 427, 739
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 6 cut(s) 105, 235, 388, 402, 572, 579
BspCNI CTCAG 1 cut(s) 855
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 553, 872
BspPI GGATC 2 cut(s) 107, 233
BspT104I TTCGAA 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 551
BspTI CTTAAG 1 cut(s) 455
BsrI ACTGG 3 cut(s) 184, 472, 498
BssECI CCNNGG 4 cut(s) 15, 51, 280, 758
BssMI GATC 6 cut(s) 99, 227, 238, 316, 427, 739
BssT1I CCWWGG 2 cut(s) 51, 758
Bst2UI CCWGG 2 cut(s) 220, 282
Bst4CI ACNGT 2 cut(s) 149, 784
Bst6I CTCTTC 1 cut(s) 321
BstAFI CTTAAG 1 cut(s) 455
BstBI TTCGAA 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 247, 251
BstDEI CTNAG 1 cut(s) 863
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 575, 697, 730
BstFNI CGCG 1 cut(s) 237
BstKTI GATC 6 cut(s) 102, 230, 241, 319, 430, 742
BstMAI GTCTC 2 cut(s) 199, 853
BstMBI GATC 6 cut(s) 99, 227, 238, 316, 427, 739
BstMWI GCNNNNNNNGC 3 cut(s) 255, 578, 743
BstNI CCWGG 2 cut(s) 220, 282
BstNSI RCATGY 2 cut(s) 509, 842
BstSCI CCNGG 2 cut(s) 218, 280
BstSFI CTRYAG 1 cut(s) 780
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 447, 656, 733
BstV2I GAAGAC 2 cut(s) 42, 859
BstXI CCANNNNNNTGG 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 3 cut(s) 575, 697, 730
Cac8I GCNNGC 2 cut(s) 247, 251
Cfr13I GGNCC 1 cut(s) 871
Csp6I GTAC 6 cut(s) 223, 266, 285, 343, 497, 610
CviAII CATG 5 cut(s) 52, 323, 436, 506, 839
CviJI RGCY 7 cut(s) 70, 234, 245, 460, 471, 669, 737
CviKI_1 RGCY 7 cut(s) 70, 234, 245, 460, 471, 669, 737
CviQI GTAC 6 cut(s) 223, 266, 285, 343, 497, 610
DdeI CTNAG 1 cut(s) 863
DpnI GATC 6 cut(s) 101, 229, 240, 318, 429, 741
DpnII GATC 6 cut(s) 99, 227, 238, 316, 427, 739
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 1 cut(s) 568
Eco130I CCWWGG 2 cut(s) 51, 758
Eco47I GGWCC 1 cut(s) 871
EcoRII CCWGG 2 cut(s) 218, 280
EcoT14I CCWWGG 2 cut(s) 51, 758
ErhI CCWWGG 2 cut(s) 51, 758
FaeI CATG 5 cut(s) 55, 326, 439, 509, 842
FaiI YATR 7 cut(s) 53, 78, 324, 437, 507, 767, 840
FaqI GGGAC 3 cut(s) 185, 263, 322
FatI CATG 5 cut(s) 51, 322, 435, 505, 838
FauI CCCGC 1 cut(s) 381
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 5 cut(s) 235, 461, 573, 670, 747
FokI GGATG 3 cut(s) 562, 704, 737
Fsp4HI GCNGC 5 cut(s) 235, 461, 573, 670, 747
FspBI CTAG 5 cut(s) 191, 405, 750, 759, 830
GluI GCNGC 5 cut(s) 235, 461, 573, 670, 747
GsuI CTGGAG 1 cut(s) 840
Hin1II CATG 5 cut(s) 55, 326, 439, 509, 842
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 2 cut(s) 56, 290
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 5 cut(s) 19, 61, 475, 600, 845
Hpy188III TCNNGA 1 cut(s) 819
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 3 cut(s) 505, 562, 924
HpyCH4III ACNGT 2 cut(s) 149, 784
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 7 cut(s) 8, 213, 365, 522, 664, 672, 838
HpyF10VI GCNNNNNNNGC 3 cut(s) 255, 578, 743
HpyF3I CTNAG 1 cut(s) 863
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 5 cut(s) 55, 326, 439, 509, 842
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 6 cut(s) 99, 227, 238, 316, 427, 739
Lsp1109I GCAGC 3 cut(s) 447, 656, 733
LweI GCATC 2 cut(s) 466, 584
MaeI CTAG 5 cut(s) 191, 405, 750, 759, 830
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 183, 652
MalI GATC 6 cut(s) 101, 229, 240, 318, 429, 741
MboI GATC 6 cut(s) 99, 227, 238, 316, 427, 739
MboII GAAGA 6 cut(s) 32, 47, 135, 338, 577, 864
MluCI AATT 3 cut(s) 485, 603, 633
MmeI TCCRAC 2 cut(s) 766, 898
MseI TTAA 3 cut(s) 303, 456, 606
MspA1I CMGCKG 1 cut(s) 105
MspCI CTTAAG 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 220, 282
MvaI CCWGG 2 cut(s) 220, 282
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 3 cut(s) 255, 578, 743
NcoI CCATGG 1 cut(s) 51
NdeII GATC 6 cut(s) 99, 227, 238, 316, 427, 739
NlaIII CATG 5 cut(s) 55, 326, 439, 509, 842
NlaIV GGNNCC 2 cut(s) 553, 872
NmuCI GTSAC 1 cut(s) 183
NspI RCATGY 2 cut(s) 509, 842
NspV TTCGAA 1 cut(s) 165
PciI ACATGT 1 cut(s) 505
PfeI GAWTC 2 cut(s) 56, 290
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 5 cut(s) 236, 462, 574, 671, 748
PscI ACATGT 1 cut(s) 505
PshBI ATTAAT 1 cut(s) 303
Psp1406I AACGTT 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 218, 280
PspGI CCWGG 2 cut(s) 218, 280
PspN4I GGNNCC 2 cut(s) 553, 872
PspPI GGNCC 1 cut(s) 871
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 6 cut(s) 224, 267, 286, 344, 498, 611
RsaNI GTAC 6 cut(s) 223, 266, 285, 343, 497, 610
SaqAI TTAA 3 cut(s) 303, 456, 606
SatI GCNGC 5 cut(s) 235, 461, 573, 670, 747
Sau3AI GATC 6 cut(s) 99, 227, 238, 316, 427, 739
Sau96I GGNCC 1 cut(s) 871
ScaI AGTACT 2 cut(s) 344, 611
ScrFI CCNGG 2 cut(s) 220, 282
SetI ASST 9 cut(s) 66, 72, 162, 247, 286, 382, 462, 764, 935
SfaNI GCATC 2 cut(s) 466, 584
SfcI CTRYAG 1 cut(s) 780
SfuI TTCGAA 1 cut(s) 165
SinI GGWCC 1 cut(s) 871
SmlI CTYRAG 2 cut(s) 65, 455
SmoI CTYRAG 2 cut(s) 65, 455
SpeI ACTAGT 1 cut(s) 829
Sse9I AATT 3 cut(s) 485, 603, 633
SsiI CCGC 6 cut(s) 105, 235, 388, 402, 572, 579
SspMI CTAG 5 cut(s) 191, 405, 750, 759, 830
StyD4I CCNGG 2 cut(s) 218, 280
StyI CCWWGG 2 cut(s) 51, 758
TaaI ACNGT 2 cut(s) 149, 784
TaiI ACGT 1 cut(s) 162
TaqI TCGA 4 cut(s) 165, 230, 297, 714
TasI AATT 3 cut(s) 485, 603, 633
TatI WGTACW 2 cut(s) 342, 609
TauI GCSGC 2 cut(s) 237, 575
TfiI GAWTC 2 cut(s) 56, 290
Tru1I TTAA 3 cut(s) 303, 456, 606
Tru9I TTAA 3 cut(s) 303, 456, 606
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 3 cut(s) 460, 669, 746
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 339
TspGWI ACGGA 2 cut(s) 302, 871
Tth111I GACNNNGTC 1 cut(s) 275
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 871
VspI ATTAAT 1 cut(s) 303
XceI RCATGY 2 cut(s) 509, 842
XmaJI CCTAGG 1 cut(s) 758
XspI CTAG 5 cut(s) 191, 405, 750, 759, 830
ZrmI AGTACT 2 cut(s) 344, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.