Rh1DG307900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017673
Physical Location & Seq
Reverse (-)
53521698 .. 53527044
5347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG307900.1

Sequence Viewer

Length: 939 bp
ATGTCTGCAACTCCCCCAGAAGAAGCAGAAGACCAAAACCCCACCATGGAATCAGACCTTGAGCTTCTCCATCTCAGTTCCAATCCGCAGAGGATCAGCGGTGATGGGTTCGATCGAAGATGGGAGGACTTGAACCCGGACTGTTTGGTCAACGTTTTCGAAAGAGTGGGAACTGGGTCACTTCTAGTCTCTGTCCCTTTCGTCTGCAAGTCATGGTACAGATCTAGCCTCAATCCTGCTTGCTGGCAACGCCTCATTGTACCAGACGATGTCCCAGGTACGGATTCTTTCGACATTAATGGGACTGATGATCTTTCAAGTTATGATGTTCAAGATGAAGAGGCTAGATTTAAGTACTTTGTTAGAAAAAGATTTGCAATTGAGTTTCAACTTGATTTGCGGGGTTTCTCCACCGCTAGTTTTTTCAAGTTTGTGATTGATCGTAGCATGGGAAATGTCAAGTTTCTTAAGCTGCCTACTGGCTCTTATGCTTTAGAAGTAGTACTTGAACATGTGAAGGAGAAATGCAAGAGTTTCTGTGGGTTGAATGTGTGTGATGCCGATATTGGGAAGAAGGCGGCATCGGCCATTGTCAAGTTTGTGCCGAAAATTAAGTACTTGTGGTTGAGGAGGGCGAGAATTGGTAGGCAGGGTCTTGTTACTTTATTGCAAGGCTGCAAGGACCTTGAACTTTTGGATGTTAGGGAGTCTAGTGGTTTCGATGAGGGGGATGAGGAAATAGCCGAGCTTGCTGCTAGTATTCCTAAGTTTATGTGTGAGGGCTCGAGAGTTGGACAGGGAGGAGGAGGGCAAAGGATCTTGTATGGATACCGATTTGGAGGGCGAAGAATCTTGTATGTCGGAGTAGGAAGACAAAGAGTCTTGAATGTCCAACGAGGAGAAGAACGAGTTGTGATGACATTAGAGGACAGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

312

Amino Acids

35.11

Weight (kDa)

5.52

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017673)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24920 FvH4_7g19290
rosa_chinensis RchiOBHm_Chr1g0363161
rosa_laevigata RLG00000027587
rosa_multiflora Rmu_sc0002925.1_g000002
rosa_roxburghii Rroxscaffold_4G00293400
rosa_rugosa Rorug01G0305200.1
rosa_samantha Rh1AG313900 Rh1BG277400 Rh1CG293800 Rh1DG307900
rosa_wichuraiana Rw1G027810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AciI CCGC 5 cut(s) 86, 99, 400, 414, 578
AclI AACGTT 1 cut(s) 153
AclWI GGATC 2 cut(s) 101, 824
AcoI YGGCCR 1 cut(s) 585
AfaI GTAC 6 cut(s) 218, 261, 280, 356, 504, 617
AfiI CCNNNNNNNGG 3 cut(s) 46, 280, 567
AflII CTTAAG 1 cut(s) 467
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 9 cut(s) 133, 318, 332, 389, 427, 509, 547, 689, 886
AhdI GACNNNNNGTC 1 cut(s) 878
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 3 cut(s) 64, 472, 748
AluI AGCT 3 cut(s) 64, 472, 748
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 2 cut(s) 101, 824
Ama87I CYCGRG 1 cut(s) 784
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 3 cut(s) 472, 675, 752
AseI ATTAAT 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 682
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 159
AvaI CYCGRG 1 cut(s) 784
AvaII GGWCC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 785
BbsI GAAGAC 2 cut(s) 36, 877
BbvI GCAGC 3 cut(s) 459, 662, 739
BccI CCATC 3 cut(s) 78, 98, 114
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BciT130I CCWGG 1 cut(s) 276
BciVI GTATCC 1 cut(s) 821
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 6 cut(s) 185, 225, 345, 417, 711, 756
BfrI CTTAAG 1 cut(s) 467
BfuI GTATCC 1 cut(s) 821
BglII AGATCT 1 cut(s) 221
BisI GCNGC 4 cut(s) 473, 579, 676, 753
BlsI GCNGC 4 cut(s) 474, 580, 677, 754
BmcAI AGTACT 3 cut(s) 356, 504, 617
Bme1390I CCNGG 2 cut(s) 137, 276
Bme18I GGWCC 1 cut(s) 682
BmeRI GACNNNNNGTC 1 cut(s) 878
BmeT110I CYCGRG 1 cut(s) 784
BmgT120I GGNCC 1 cut(s) 682
BmrFI CCNGG 2 cut(s) 137, 276
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 2 cut(s) 547, 590
BmuI ACTGGG 1 cut(s) 183
BpiI GAAGAC 2 cut(s) 36, 877
Bpu14I TTCGAA 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 45, 274
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 280, 567
Bse1I ACTGG 2 cut(s) 178, 484
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 45, 274
BseGI GGATG 2 cut(s) 703, 736
BseLI CCNNNNNNNGG 3 cut(s) 46, 280, 567
BseMII CTCAG 1 cut(s) 88
BseNI ACTGG 2 cut(s) 178, 484
BseRI GAGGAG 4 cut(s) 643, 816, 819, 912
BseXI GCAGC 3 cut(s) 459, 662, 739
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 1 cut(s) 587
BsiEI CGRYCG 1 cut(s) 115
BsiHKCI CYCGRG 1 cut(s) 784
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 3 cut(s) 179, 257, 316
BslI CCNNNNNNNGG 3 cut(s) 46, 280, 567
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 3 cut(s) 179, 257, 316
BsnI GGCC 1 cut(s) 587
BsoBI CYCGRG 1 cut(s) 784
Bsp119I TTCGAA 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 785
Bsp143I GATC 6 cut(s) 93, 112, 221, 310, 439, 816
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 5 cut(s) 86, 99, 400, 414, 578
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 1 cut(s) 87
BspPI GGATC 2 cut(s) 101, 824
BspT104I TTCGAA 1 cut(s) 159
BspTI CTTAAG 1 cut(s) 467
BsrI ACTGG 2 cut(s) 178, 484
BssECI CCNNGG 2 cut(s) 45, 274
BssMI GATC 6 cut(s) 93, 112, 221, 310, 439, 816
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 333
BstAFI CTTAAG 1 cut(s) 467
BstBI TTCGAA 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 241, 245, 750
BstDEI CTNAG 2 cut(s) 74, 765
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 703, 736
BstKTI GATC 6 cut(s) 96, 115, 224, 313, 442, 819
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 6 cut(s) 93, 112, 221, 310, 439, 816
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 3 cut(s) 249, 584, 749
BstNI CCWGG 1 cut(s) 276
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 2 cut(s) 135, 274
BstV1I GCAGC 3 cut(s) 459, 662, 739
BstV2I GAAGAC 2 cut(s) 36, 877
BstX2I RGATCY 2 cut(s) 221, 816
BstYI RGATCY 2 cut(s) 221, 816
BsuI GTATCC 1 cut(s) 821
BsuRI GGCC 1 cut(s) 587
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 703, 736
Cac8I GCNNGC 3 cut(s) 241, 245, 750
Cfr13I GGNCC 1 cut(s) 682
Csp6I GTAC 6 cut(s) 217, 260, 279, 355, 503, 616
CviAII CATG 5 cut(s) 46, 213, 448, 512, 936
CviQI GTAC 6 cut(s) 217, 260, 279, 355, 503, 616
DdeI CTNAG 2 cut(s) 74, 765
DpnI GATC 6 cut(s) 95, 114, 223, 312, 441, 818
DpnII GATC 6 cut(s) 93, 112, 221, 310, 439, 816
DrdI GACNNNNNNGTC 1 cut(s) 146
DriI GACNNNNNGTC 1 cut(s) 878
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 1 cut(s) 333
Eam1105I GACNNNNNGTC 1 cut(s) 878
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 785
Eco47I GGWCC 1 cut(s) 682
Eco88I CYCGRG 1 cut(s) 784
EcoO109I RGGNCCY 1 cut(s) 682
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 785
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 5 cut(s) 49, 216, 451, 515, 939
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 3 cut(s) 179, 257, 316
FatI CATG 5 cut(s) 45, 212, 447, 511, 935
FauI CCCGC 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 473, 579, 676, 753
FokI GGATG 2 cut(s) 710, 743
FriOI GRGCYC 1 cut(s) 785
Fsp4HI GCNGC 4 cut(s) 473, 579, 676, 753
FspBI CTAG 6 cut(s) 185, 225, 345, 417, 711, 756
GluI GCNGC 4 cut(s) 473, 579, 676, 753
HaeIII GGCC 1 cut(s) 587
HapII CCGG 1 cut(s) 137
Hin1II CATG 5 cut(s) 49, 216, 451, 515, 939
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 5 cut(s) 50, 284, 707, 849, 879
HpaII CCGG 1 cut(s) 137
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 55, 863
Hpy188III TCNNGA 3 cut(s) 332, 786, 883
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 511, 568
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 6 cut(s) 8, 207, 377, 528, 670, 678
HpyF10VI GCNNNNNNNGC 3 cut(s) 249, 584, 749
HpyF3I CTNAG 2 cut(s) 74, 765
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 5 cut(s) 49, 216, 451, 515, 939
Kzo9I GATC 6 cut(s) 93, 112, 221, 310, 439, 816
Lsp1109I GCAGC 3 cut(s) 459, 662, 739
LweI GCATC 2 cut(s) 547, 590
MaeI CTAG 6 cut(s) 185, 225, 345, 417, 711, 756
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 2 cut(s) 177, 658
MalI GATC 6 cut(s) 95, 114, 223, 312, 441, 818
MboI GATC 6 cut(s) 93, 112, 221, 310, 439, 816
MboII GAAGA 8 cut(s) 32, 41, 129, 350, 583, 858, 882, 914
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 2 cut(s) 221, 816
MhlI GDGCHC 1 cut(s) 785
MluCI AATT 3 cut(s) 378, 609, 639
MlyI GAGTC 2 cut(s) 716, 888
MmeI TCCRAC 3 cut(s) 772, 841, 916
MseI TTAA 4 cut(s) 297, 351, 468, 612
MspA1I CMGCKG 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 467
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 2 cut(s) 137, 276
MunI CAATTG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 249, 584, 749
NciI CCSGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 45
NdeII GATC 6 cut(s) 93, 112, 221, 310, 439, 816
NlaIII CATG 5 cut(s) 49, 216, 451, 515, 939
NmeAIII GCCGAG 1 cut(s) 769
NmuCI GTSAC 1 cut(s) 177
NspI RCATGY 1 cut(s) 515
NspV TTCGAA 1 cut(s) 159
PaeR7I CTCGAG 1 cut(s) 784
PciI ACATGT 1 cut(s) 511
PfeI GAWTC 3 cut(s) 50, 284, 849
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 4 cut(s) 474, 580, 677, 754
Ple19I CGATCG 1 cut(s) 115
PleI GAGTC 2 cut(s) 715, 887
PpsI GAGTC 2 cut(s) 715, 887
PpuMI RGGWCCY 1 cut(s) 682
PscI ACATGT 1 cut(s) 511
PshBI ATTAAT 1 cut(s) 297
Psp1406I AACGTT 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 682
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspPI GGNCC 1 cut(s) 682
PspPPI RGGWCCY 1 cut(s) 682
PsuI RGATCY 2 cut(s) 221, 816
PsyI GACNNNGTC 1 cut(s) 269
PvuI CGATCG 1 cut(s) 115
RsaI GTAC 6 cut(s) 218, 261, 280, 356, 504, 617
RsaNI GTAC 6 cut(s) 217, 260, 279, 355, 503, 616
SaqAI TTAA 4 cut(s) 297, 351, 468, 612
SatI GCNGC 4 cut(s) 473, 579, 676, 753
Sau3AI GATC 6 cut(s) 93, 112, 221, 310, 439, 816
Sau96I GGNCC 1 cut(s) 682
ScaI AGTACT 3 cut(s) 356, 504, 617
SchI GAGTC 2 cut(s) 716, 888
ScrFI CCNGG 2 cut(s) 137, 276
SduI GDGCHC 1 cut(s) 785
SetI ASST 7 cut(s) 60, 66, 156, 280, 474, 687, 750
SfaNI GCATC 2 cut(s) 547, 590
Sfr274I CTCGAG 1 cut(s) 784
SfuI TTCGAA 1 cut(s) 159
SinI GGWCC 1 cut(s) 682
SlaI CTCGAG 1 cut(s) 784
SmlI CTYRAG 3 cut(s) 59, 467, 784
SmoI CTYRAG 3 cut(s) 59, 467, 784
Sse9I AATT 3 cut(s) 378, 609, 639
SsiI CCGC 5 cut(s) 86, 99, 400, 414, 578
SspMI CTAG 6 cut(s) 185, 225, 345, 417, 711, 756
StyD4I CCNGG 2 cut(s) 135, 274
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 1 cut(s) 156
TaqI TCGA 6 cut(s) 111, 115, 159, 291, 720, 785
TasI AATT 3 cut(s) 378, 609, 639
TatI WGTACW 3 cut(s) 354, 502, 615
TauI GCSGC 1 cut(s) 581
TfiI GAWTC 3 cut(s) 50, 284, 849
Tru1I TTAA 4 cut(s) 297, 351, 468, 612
Tru9I TTAA 4 cut(s) 297, 351, 468, 612
TseFI GTSAC 1 cut(s) 177
TseI GCWGC 3 cut(s) 472, 675, 752
Tsp45I GTSAC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 351
TspGWI ACGGA 1 cut(s) 296
Tth111I GACNNNGTC 1 cut(s) 269
Vha464I CTTAAG 1 cut(s) 467
VpaK11BI GGWCC 1 cut(s) 682
VspI ATTAAT 1 cut(s) 297
XceI RCATGY 1 cut(s) 515
XhoI CTCGAG 1 cut(s) 784
XspI CTAG 6 cut(s) 185, 225, 345, 417, 711, 756
ZrmI AGTACT 3 cut(s) 356, 504, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.