Rmu_sc0002925.1_g000002

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002925.1
OG0017673
Physical Location & Seq
Reverse (-)
4083 .. 4976
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002925.1_g000002.1.cds

Sequence Viewer

Length: 894 bp
atggaatcagaccttgagcttctccatctcagttccaatccccagaggatcagcggtgatgggttcgatcgaagatgggaggacttgaacccggactgtttggtcaacgttttcgaaagagtgggaactgggtcacttctagtctctgtccctttcgtctgcaagtcatggtacagatctagcctcaatcctgcttgctggcaacgcctcattgtaccagacgatgtcccaggtacggattctttcgacattaatgggactgatgatctttccagttatgatgttcaagatgaagaggctagatttaagtactttgtaagaaaaagatttgcacttgaatttcaacttgatttgcggggtttctccaccgctagttttttcaagtttgtgattgatcgtagcatgggaaatgtgaagtttcttaagctgcctactggctcttatgctttagaagttgtacttgaacatgtgaaggagaaatgcaagagtttctgtgggttgaatgtgtgtgatgccgatattgggaagaaggcggcatcggccattgtcaagtttgtgccgaaaattaagtacttgtggttgaggagggcgagaattggtaggcagggtcttgttactttattgcaaggctgcaaggaccttgaccttttggatgttagggagtgtagtggttttgatgagggggatgaggaaatagccgagcttgctgctagtattcctaagtttatgtgtgagggttccagagttggacagggaggaggagggcaaaggatcttgtatggataccgatttggagggcgaagaatcttgtatgtcggaggaggaagacaaagagtcttgaatgtccaacgaggacaagaacgagttgtgatgacattagaggacagagcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

297

Amino Acids

33.47

Weight (kDa)

7.48

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017673)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24920 FvH4_7g19290
rosa_chinensis RchiOBHm_Chr1g0363161
rosa_laevigata RLG00000027587
rosa_multiflora Rmu_sc0002925.1_g000002
rosa_roxburghii Rroxscaffold_4G00293400
rosa_rugosa Rorug01G0305200.1
rosa_samantha Rh1AG313900 Rh1BG277400 Rh1CG293800 Rh1DG307900
rosa_wichuraiana Rw1G027810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AciI CCGC 4 cut(s) 54, 355, 369, 533
AclI AACGTT 1 cut(s) 108
AclWI GGATC 2 cut(s) 56, 779
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 6 cut(s) 173, 216, 235, 311, 459, 572
AfiI CCNNNNNNNGG 2 cut(s) 235, 522
AflII CTTAAG 1 cut(s) 422
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 8 cut(s) 88, 287, 338, 344, 382, 464, 502, 841
AhdI GACNNNNNGTC 1 cut(s) 833
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 3 cut(s) 19, 427, 703
AluI AGCT 3 cut(s) 19, 427, 703
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 2 cut(s) 56, 779
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 3 cut(s) 427, 630, 707
ApoI RAATTY 1 cut(s) 338
AseI ATTAAT 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 637
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 68
AsuII TTCGAA 1 cut(s) 114
AvaII GGWCC 1 cut(s) 637
BbsI GAAGAC 1 cut(s) 832
BbvI GCAGC 3 cut(s) 414, 617, 694
BccI CCATC 3 cut(s) 33, 53, 69
BcgI CGANNNNNNTGC 2 cut(s) 689, 723
BciT130I CCWGG 1 cut(s) 231
BciVI GTATCC 1 cut(s) 776
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 5 cut(s) 140, 180, 300, 372, 711
BfrI CTTAAG 1 cut(s) 422
BfuI GTATCC 1 cut(s) 776
BglII AGATCT 1 cut(s) 176
BisI GCNGC 4 cut(s) 428, 534, 631, 708
BlsI GCNGC 4 cut(s) 429, 535, 632, 709
BmcAI AGTACT 2 cut(s) 311, 572
Bme1390I CCNGG 2 cut(s) 92, 231
Bme18I GGWCC 1 cut(s) 637
BmeRI GACNNNNNGTC 1 cut(s) 833
BmgT120I GGNCC 1 cut(s) 637
BmiI GGNNCC 1 cut(s) 739
BmrFI CCNGG 2 cut(s) 92, 231
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 502, 545
BmuI ACTGGG 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 832
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 522
Bse1I ACTGG 3 cut(s) 133, 273, 439
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 2 cut(s) 658, 691
BseLI CCNNNNNNNGG 2 cut(s) 235, 522
BseMII CTCAG 1 cut(s) 43
BseNI ACTGG 3 cut(s) 133, 273, 439
BseRI GAGGAG 4 cut(s) 598, 771, 774, 834
BseXI GCAGC 3 cut(s) 414, 617, 694
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 542
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 3 cut(s) 134, 212, 271
BslI CCNNNNNNNGG 2 cut(s) 235, 522
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 3 cut(s) 134, 212, 271
BsnI GGCC 1 cut(s) 542
Bsp119I TTCGAA 1 cut(s) 114
Bsp143I GATC 6 cut(s) 48, 67, 176, 265, 394, 771
BspACI CCGC 4 cut(s) 54, 355, 369, 533
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 739
BspPI GGATC 2 cut(s) 56, 779
BspT104I TTCGAA 1 cut(s) 114
BspTI CTTAAG 1 cut(s) 422
BsrI ACTGG 3 cut(s) 133, 273, 439
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 6 cut(s) 48, 67, 176, 265, 394, 771
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 288
BstAFI CTTAAG 1 cut(s) 422
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 3 cut(s) 196, 200, 705
BstDEI CTNAG 2 cut(s) 29, 720
BstF5I GGATG 2 cut(s) 658, 691
BstKTI GATC 6 cut(s) 51, 70, 179, 268, 397, 774
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 6 cut(s) 48, 67, 176, 265, 394, 771
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 204, 539, 704
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 90, 229
BstV1I GCAGC 3 cut(s) 414, 617, 694
BstV2I GAAGAC 1 cut(s) 832
BstX2I RGATCY 2 cut(s) 176, 771
BstYI RGATCY 2 cut(s) 176, 771
BsuI GTATCC 1 cut(s) 776
BsuRI GGCC 1 cut(s) 542
BtsCI GGATG 2 cut(s) 658, 691
Cac8I GCNNGC 3 cut(s) 196, 200, 705
Cfr13I GGNCC 1 cut(s) 637
Csp6I GTAC 6 cut(s) 172, 215, 234, 310, 458, 571
CviAII CATG 4 cut(s) 168, 403, 467, 891
CviJI RGCY 9 cut(s) 19, 183, 299, 427, 438, 542, 630, 698, 703
CviKI_1 RGCY 9 cut(s) 19, 183, 299, 427, 438, 542, 630, 698, 703
CviQI GTAC 6 cut(s) 172, 215, 234, 310, 458, 571
DdeI CTNAG 2 cut(s) 29, 720
DpnI GATC 6 cut(s) 50, 69, 178, 267, 396, 773
DpnII GATC 6 cut(s) 48, 67, 176, 265, 394, 771
DrdI GACNNNNNNGTC 1 cut(s) 101
DriI GACNNNNNGTC 1 cut(s) 833
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 1 cut(s) 288
Eam1105I GACNNNNNGTC 1 cut(s) 833
EarI CTCTTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 637
EcoO109I RGGNCCY 1 cut(s) 637
EcoRII CCWGG 1 cut(s) 229
FaeI CATG 4 cut(s) 171, 406, 470, 894
FaiI YATR 9 cut(s) 169, 279, 404, 444, 468, 728, 780, 813, 892
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 3 cut(s) 134, 212, 271
FatI CATG 4 cut(s) 167, 402, 466, 890
FauI CCCGC 1 cut(s) 348
Fnu4HI GCNGC 4 cut(s) 428, 534, 631, 708
FokI GGATG 2 cut(s) 665, 698
Fsp4HI GCNGC 4 cut(s) 428, 534, 631, 708
FspBI CTAG 5 cut(s) 140, 180, 300, 372, 711
GluI GCNGC 4 cut(s) 428, 534, 631, 708
HaeIII GGCC 1 cut(s) 542
HapII CCGG 1 cut(s) 92
Hin1II CATG 4 cut(s) 171, 406, 470, 894
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 4 cut(s) 5, 239, 804, 834
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 10, 818
Hpy188III TCNNGA 3 cut(s) 287, 741, 838
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 466, 523
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 5 cut(s) 162, 332, 483, 625, 633
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 539, 704
HpyF3I CTNAG 2 cut(s) 29, 720
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 4 cut(s) 171, 406, 470, 894
Kzo9I GATC 6 cut(s) 48, 67, 176, 265, 394, 771
Lsp1109I GCAGC 3 cut(s) 414, 617, 694
LweI GCATC 2 cut(s) 502, 545
MaeI CTAG 5 cut(s) 140, 180, 300, 372, 711
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 132, 613
MalI GATC 6 cut(s) 50, 69, 178, 267, 396, 773
MboI GATC 6 cut(s) 48, 67, 176, 265, 394, 771
MboII GAAGA 5 cut(s) 84, 305, 538, 813, 837
MflI RGATCY 2 cut(s) 176, 771
MluCI AATT 3 cut(s) 338, 564, 594
MlyI GAGTC 1 cut(s) 843
MmeI TCCRAC 3 cut(s) 727, 796, 871
MseI TTAA 4 cut(s) 252, 306, 423, 567
MspA1I CMGCKG 1 cut(s) 54
MspCI CTTAAG 1 cut(s) 422
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 92, 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 204, 539, 704
NciI CCSGG 1 cut(s) 92
NdeII GATC 6 cut(s) 48, 67, 176, 265, 394, 771
NlaIII CATG 4 cut(s) 171, 406, 470, 894
NlaIV GGNNCC 1 cut(s) 739
NmeAIII GCCGAG 1 cut(s) 724
NmuCI GTSAC 1 cut(s) 132
NspI RCATGY 1 cut(s) 470
NspV TTCGAA 1 cut(s) 114
PciI ACATGT 1 cut(s) 466
PfeI GAWTC 3 cut(s) 5, 239, 804
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 4 cut(s) 429, 535, 632, 709
Ple19I CGATCG 1 cut(s) 70
PleI GAGTC 1 cut(s) 842
PpsI GAGTC 1 cut(s) 842
PpuMI RGGWCCY 1 cut(s) 637
PscI ACATGT 1 cut(s) 466
PshBI ATTAAT 1 cut(s) 252
Psp1406I AACGTT 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 637
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 739
PspPI GGNCC 1 cut(s) 637
PspPPI RGGWCCY 1 cut(s) 637
PsuI RGATCY 2 cut(s) 176, 771
PsyI GACNNNGTC 1 cut(s) 224
PvuI CGATCG 1 cut(s) 70
RsaI GTAC 6 cut(s) 173, 216, 235, 311, 459, 572
RsaNI GTAC 6 cut(s) 172, 215, 234, 310, 458, 571
SaqAI TTAA 4 cut(s) 252, 306, 423, 567
SatI GCNGC 4 cut(s) 428, 534, 631, 708
Sau3AI GATC 6 cut(s) 48, 67, 176, 265, 394, 771
Sau96I GGNCC 1 cut(s) 637
ScaI AGTACT 2 cut(s) 311, 572
SchI GAGTC 1 cut(s) 843
ScrFI CCNGG 2 cut(s) 92, 231
SetI ASST 8 cut(s) 15, 21, 111, 235, 429, 642, 648, 705
SfaNI GCATC 2 cut(s) 502, 545
SfuI TTCGAA 1 cut(s) 114
SinI GGWCC 1 cut(s) 637
SmlI CTYRAG 2 cut(s) 14, 422
SmoI CTYRAG 2 cut(s) 14, 422
Sse9I AATT 3 cut(s) 338, 564, 594
SsiI CCGC 4 cut(s) 54, 355, 369, 533
SspMI CTAG 5 cut(s) 140, 180, 300, 372, 711
StyD4I CCNGG 2 cut(s) 90, 229
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 111
TaqI TCGA 4 cut(s) 66, 70, 114, 246
TasI AATT 3 cut(s) 338, 564, 594
TatI WGTACW 3 cut(s) 309, 457, 570
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 3 cut(s) 5, 239, 804
Tru1I TTAA 4 cut(s) 252, 306, 423, 567
Tru9I TTAA 4 cut(s) 252, 306, 423, 567
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 3 cut(s) 427, 630, 707
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 306
TspGWI ACGGA 1 cut(s) 251
Tth111I GACNNNGTC 1 cut(s) 224
Vha464I CTTAAG 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 637
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 1 cut(s) 338
XceI RCATGY 1 cut(s) 470
XspI CTAG 5 cut(s) 140, 180, 300, 372, 711
ZrmI AGTACT 2 cut(s) 311, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.