FvH4_7g19320

Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser Thr consensus motif in nascent polypeptide chains

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
15939267 .. 15945241
5975 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19320.t4

Sequence Viewer

Length: 1341 bp
ATGGAAGCTCTGCGAAGCTTAGCTCGATTGCTCCTAGCCTTCACCATCTTCTCCAATCTCTCGCTGCTCGCTTGCTCCTCCTCGCTTCAGGACATCCAGATCGCCACCGCCGAGCGCAGAATTGACGTGTCGTCTCACATCATCAAGGCTTTCTTGACGTTAAAGGTTGATCATATATCATCGCTCAAAGCAGCTCTTACTGTCGGAAAGAAGAAAAAGAAAAGTTATGTGCCTCTTGAAGTGAATCCCACTGAACTACCTGATGCACCAAATGGGACCAAATACTTCAAAATATTGTTGCTCAACCCATTGAGTGCTGGTGAAACTGCAACAGTAGAAGTGCTTTACGTATTGACGCATTCTCTGGAGCCTTTCCCAGCCGAGATAAGCCAATCGGAGTCTCAGTTGGTCTACTACCGGGACAGTGCAATAATATTGTCTCCCTATTATATTAAGCAACAGACCACGTTTATAAAAACTCCTAGTACTAGGGTGGAGTCATTTACTAGAGTAGACCCCACTACACGTGCTGGTATCGAACTGAAGTATGGACCGTACAAGGATTGCCCTGCATACTCATATGCTCCTGTTCTTGTTCATTTTGAGAATAACAGTCCATTTGCTGTTGTTGAGGAACTTGTACGCGAGATAGAAATATCTCACTGGGGAAGTCTTCAGATCACAGAACATTACACTCTAGCACATACTGGCGCTCGACACAAAGGTGTTTTTTCGAGGGTTGATTATCAAGCTCGGTCTAGTGGTGTCTCTTCATTCAAACATCTCCTAGCAAGACTACCTCCTAGGGTCCATTCAGTCTTCTACCGAGATCAAATTGGGAATATCTCGTCATCACATTTGCGTACAGATTATCGAAGGTCAGAGCTTGAAATTGAACCGAGGTATCCTTTATTTGGAGGTTGGAAAGCTACTTTTGTAATCGGGTATGGGTTACCATTGCAAGACTTCCTATTTGAGTCACCTGATGGCAGGCGATACCTCAATTTCACCTTTGGTTGTCCTCTTGTTGAGACGGTGGTAGACAAGTTAACCCTCAAAGTTGTGCTACCAGAGGGATCGAAAGATCCATCTGCTGTGGTTCCTTTTACGGTTGACCAACATCTAGAGACCAAATACTCATACCTTGATATCGTTGGAAGGACAGTGGTCGTTCTTGAGAAGAAGAATGTAGTTCCTGAGCATAATTCTCCTTTCCAGGTCTACTACAGCTTCAACCCAGTTTTCATGCTGGCAGAACCAATGATGTTGACATCTGTATTCTTCTTCCTTTTCATGGCTAGTGTAGCTTACCTACACGTAGATTTTTCTATCAGCAAGTGA

Protein Analysis

447

Amino Acids

50.4

Weight (kDa)

8.2

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribophorin_I PF04597 33 - 457 1e-145 Ribophorin I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012079)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
AccI GTMKAC 4 cut(s) 411, 513, 1041, 1221
AccII CGCG 1 cut(s) 645
AciI CCGC 1 cut(s) 108
AclWI GGATC 2 cut(s) 1079, 1084
AcuI CTGAAG 3 cut(s) 71, 563, 659
AcvI CACGTG 1 cut(s) 527
AfaI GTAC 4 cut(s) 487, 557, 642, 865
AfiI CCNNNNNNNGG 2 cut(s) 914, 1294
AflIII ACRYGT 3 cut(s) 126, 524, 1315
AgsI TTSAA 6 cut(s) 239, 289, 778, 890, 896, 1234
AhdI GACNNNNNGTC 1 cut(s) 130
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 1 cut(s) 1215
AleI CACNNNNGTG 1 cut(s) 723
AluBI AGCT 9 cut(s) 8, 18, 23, 194, 752, 886, 929, 1230, 1307
AluI AGCT 9 cut(s) 8, 18, 23, 194, 752, 886, 929, 1230, 1307
Alw26I GTCTC 6 cut(s) 138, 405, 444, 772, 1025, 1121
AlwI GGATC 2 cut(s) 1079, 1084
ApeKI GCWGC 2 cut(s) 64, 191
ArsI GACNNNNNNTTYG 2 cut(s) 956, 988
AspA2I CCTAGG 1 cut(s) 803
AspLEI GCGC 2 cut(s) 117, 713
AspS9I GGNCC 3 cut(s) 276, 551, 808
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 4 cut(s) 34, 332, 972, 1000
AvaII GGWCC 3 cut(s) 276, 551, 808
AvrII CCTAGG 1 cut(s) 803
BaeI ACNNNNGTAYC 2 cut(s) 887, 920
BbrPI CACGTG 1 cut(s) 527
BbsI GAAGAC 2 cut(s) 665, 811
BbvI GCAGC 2 cut(s) 51, 203
BccI CCATC 3 cut(s) 53, 980, 1096
BciT130I CCWGG 1 cut(s) 1217
BciVI GTATCC 1 cut(s) 915
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 6 cut(s) 138, 405, 444, 772, 1025, 1121
BfmI CTRYAG 1 cut(s) 1225
BfoI RGCGCY 1 cut(s) 714
BfuI GTATCC 1 cut(s) 915
BisI GCNGC 2 cut(s) 65, 192
BlnI CCTAGG 1 cut(s) 803
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 2 cut(s) 66, 193
BmcAI AGTACT 1 cut(s) 487
Bme1390I CCNGG 2 cut(s) 419, 1217
Bme18I GGWCC 3 cut(s) 276, 551, 808
BmeRI GACNNNNNGTC 1 cut(s) 130
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 3 cut(s) 276, 551, 808
BmiI GGNNCC 4 cut(s) 277, 369, 809, 1101
BmrFI CCNGG 2 cut(s) 419, 1217
BmrI ACTGGG 2 cut(s) 673, 1232
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 2 cut(s) 673, 1232
BoxI GACNNNNGTC 1 cut(s) 1166
BpiI GAAGAC 2 cut(s) 665, 811
BpmI CTGGAG 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 1197
Bpu1102I GCTNAGC 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 1196
BpuMI CCSGG 1 cut(s) 419
BsaAI YACGTR 3 cut(s) 349, 527, 1318
BsaI GGTCTC 1 cut(s) 1121
BsaJI CCNNGG 2 cut(s) 803, 899
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 2 cut(s) 914, 1294
Bse1I ACTGG 3 cut(s) 668, 712, 1238
Bse3DI GCAATG 1 cut(s) 956
BseBI CCWGG 1 cut(s) 1217
BseDI CCNNGG 2 cut(s) 803, 899
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 914, 1294
BseMI GCAATG 1 cut(s) 956
BseMII CTCAG 2 cut(s) 416, 1188
BseNI ACTGG 3 cut(s) 668, 712, 1238
BseRI GAGGAG 2 cut(s) 67, 70
BseXI GCAGC 2 cut(s) 51, 203
BseYI CCCAGC 1 cut(s) 376
Bsh1236I CGCG 1 cut(s) 645
BsiSI CCGG 1 cut(s) 418
BslFI GGGAC 2 cut(s) 289, 434
BslI CCNNNNNNNGG 2 cut(s) 914, 1294
BsmAI GTCTC 6 cut(s) 138, 405, 444, 772, 1025, 1121
BsmBI CGTCTC 2 cut(s) 138, 1025
BsmFI GGGAC 2 cut(s) 289, 434
BsmI GAATGC 1 cut(s) 358
Bso31I GGTCTC 1 cut(s) 1121
Bsp143I GATC 6 cut(s) 99, 169, 678, 829, 1076, 1084
Bsp1720I GCTNAGC 1 cut(s) 19
BspACI CCGC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 415, 1189
BspFNI CGCG 1 cut(s) 645
BspLI GGNNCC 4 cut(s) 277, 369, 809, 1101
BspPI GGATC 2 cut(s) 1079, 1084
BspTNI GGTCTC 1 cut(s) 1121
BsrDI GCAATG 1 cut(s) 956
BsrI ACTGG 3 cut(s) 668, 712, 1238
BssECI CCNNGG 2 cut(s) 803, 899
BssMI GATC 6 cut(s) 99, 169, 678, 829, 1076, 1084
BssT1I CCWWGG 1 cut(s) 803
Bst2UI CCWGG 1 cut(s) 1217
Bst4CI ACNGT 8 cut(s) 202, 334, 425, 555, 614, 1036, 1111, 1165
Bst6I CTCTTC 1 cut(s) 775
BstBAI YACGTR 3 cut(s) 349, 527, 1318
BstC8I GCNNGC 4 cut(s) 69, 73, 992, 1251
BstDEI CTNAG 3 cut(s) 19, 402, 1197
BstEII GGTNACC 1 cut(s) 951
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 645
BstH2I RGCGCY 1 cut(s) 714
BstHHI GCGC 2 cut(s) 117, 713
BstKTI GATC 6 cut(s) 102, 172, 681, 832, 1079, 1087
BstMAI GTCTC 6 cut(s) 138, 405, 444, 772, 1025, 1121
BstMBI GATC 6 cut(s) 99, 169, 678, 829, 1076, 1084
BstMWI GCNNNNNNNGC 1 cut(s) 1304
BstNI CCWGG 1 cut(s) 1217
BstPAI GACNNNNGTC 1 cut(s) 1166
BstPI GGTNACC 1 cut(s) 951
BstSCI CCNGG 2 cut(s) 417, 1215
BstSFI CTRYAG 1 cut(s) 1225
BstSNI TACGTA 1 cut(s) 349
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 2 cut(s) 51, 203
BstV2I GAAGAC 2 cut(s) 665, 811
BstX2I RGATCY 1 cut(s) 1084
BstYI RGATCY 1 cut(s) 1084
BsuI GTATCC 1 cut(s) 915
BtgZI GCGATG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 4 cut(s) 249, 430, 661, 1170
Cac8I GCNNGC 4 cut(s) 69, 73, 992, 1251
CfoI GCGC 2 cut(s) 117, 713
Cfr13I GGNCC 3 cut(s) 276, 551, 808
CseI GACGC 1 cut(s) 364
Csp6I GTAC 4 cut(s) 486, 556, 641, 864
CviAII CATG 2 cut(s) 1246, 1294
CviQI GTAC 4 cut(s) 486, 556, 641, 864
DdeI CTNAG 3 cut(s) 19, 402, 1197
DpnI GATC 6 cut(s) 101, 171, 680, 831, 1078, 1086
DpnII GATC 6 cut(s) 99, 169, 678, 829, 1076, 1084
DriI GACNNNNNGTC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 775
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 775
Eco105I TACGTA 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 803
Eco31I GGTCTC 1 cut(s) 1121
Eco32I GATATC 1 cut(s) 1150
Eco47I GGWCC 3 cut(s) 276, 551, 808
Eco57I CTGAAG 3 cut(s) 71, 563, 659
Eco72I CACGTG 1 cut(s) 527
Eco91I GGTNACC 1 cut(s) 951
EcoO65I GGTNACC 1 cut(s) 951
EcoRII CCWGG 1 cut(s) 1215
EcoRV GATATC 1 cut(s) 1150
EcoT14I CCWWGG 1 cut(s) 803
ErhI CCWWGG 1 cut(s) 803
Esp3I CGTCTC 2 cut(s) 138, 1025
FaeI CATG 2 cut(s) 1249, 1297
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 180, 212
FaqI GGGAC 2 cut(s) 289, 434
FatI CATG 2 cut(s) 1245, 1293
FauNDI CATATG 1 cut(s) 580
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 4 cut(s) 411, 513, 1041, 1221
Fnu4HI GCNGC 2 cut(s) 65, 192
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 65, 192
GlaI GCGC 2 cut(s) 116, 712
GluI GCNGC 2 cut(s) 65, 192
GsaI CCCAGC 1 cut(s) 380
GsuI CTGGAG 1 cut(s) 386
HaeII RGCGCY 1 cut(s) 714
HapII CCGG 1 cut(s) 418
HgaI GACGC 1 cut(s) 364
HhaI GCGC 2 cut(s) 117, 713
Hin1II CATG 2 cut(s) 1249, 1297
Hin6I GCGC 2 cut(s) 115, 711
HinP1I GCGC 2 cut(s) 115, 711
HincII GTYRAC 3 cut(s) 1050, 1114, 1269
HindII GTYRAC 3 cut(s) 1050, 1114, 1269
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 4 cut(s) 244, 398, 497, 977
HpaI GTTAAC 1 cut(s) 1050
HpaII CCGG 1 cut(s) 418
HphI GGTGA 4 cut(s) 34, 332, 972, 1000
Hpy166II GTNNAC 7 cut(s) 412, 514, 1042, 1050, 1114, 1222, 1269
Hpy188I TCNGA 4 cut(s) 206, 397, 678, 883
Hpy188III TCNNGA 8 cut(s) 89, 97, 154, 236, 365, 1124, 1175, 1196
Hpy8I GTNNAC 7 cut(s) 412, 514, 1042, 1050, 1114, 1222, 1269
HpyAV CCTTC 3 cut(s) 49, 870, 1152
HpyCH4III ACNGT 8 cut(s) 202, 334, 425, 555, 614, 1036, 1111, 1165
HpyCH4IV ACGT 6 cut(s) 126, 158, 348, 467, 526, 1317
HpyCH4V TGCA 5 cut(s) 266, 329, 428, 572, 961
HpyF10VI GCNNNNNNNGC 1 cut(s) 1304
HpyF3I CTNAG 3 cut(s) 19, 402, 1197
HpySE526I ACGT 6 cut(s) 126, 158, 348, 467, 526, 1317
Hsp92II CATG 2 cut(s) 1249, 1297
HspAI GCGC 2 cut(s) 115, 711
Ksp22I TGATCA 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 1050
Kzo9I GATC 6 cut(s) 99, 169, 678, 829, 1076, 1084
LmnI GCTCC 4 cut(s) 36, 80, 367, 589
Lsp1109I GCAGC 2 cut(s) 51, 203
LweI GCATC 1 cut(s) 253
MaeII ACGT 6 cut(s) 126, 158, 348, 467, 526, 1317
MaeIII GTNAC 2 cut(s) 951, 978
MalI GATC 6 cut(s) 101, 171, 680, 831, 1078, 1086
MboI GATC 6 cut(s) 99, 169, 678, 829, 1076, 1084
MboII GAAGA 9 cut(s) 40, 223, 665, 762, 811, 1192, 1195, 1273, 1276
MflI RGATCY 1 cut(s) 1084
MluCI AATT 5 cut(s) 120, 834, 891, 1003, 1204
MlyI GAGTC 3 cut(s) 407, 506, 986
MmeI TCCRAC 3 cut(s) 184, 902, 1135
MseI TTAA 3 cut(s) 161, 453, 1049
MslI CAYNNNNRTG 1 cut(s) 723
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 2 cut(s) 419, 1217
Mva1269I GAATGC 1 cut(s) 358
MvaI CCWGG 1 cut(s) 1217
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 1304
NciI CCSGG 1 cut(s) 419
NdeI CATATG 1 cut(s) 580
NdeII GATC 6 cut(s) 99, 169, 678, 829, 1076, 1084
NlaIII CATG 2 cut(s) 1249, 1297
NlaIV GGNNCC 4 cut(s) 277, 369, 809, 1101
NmeAIII GCCGAG 2 cut(s) 136, 406
NmuCI GTSAC 1 cut(s) 978
OliI CACNNNNGTG 1 cut(s) 723
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 2 cut(s) 66, 193
PleI GAGTC 3 cut(s) 406, 505, 985
PmaCI CACGTG 1 cut(s) 527
PmlI CACGTG 1 cut(s) 527
PpsI GAGTC 3 cut(s) 406, 505, 985
Ppu21I YACGTR 3 cut(s) 349, 527, 1318
PshAI GACNNNNGTC 1 cut(s) 1166
PsiI TTATAA 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 1215
PspCI CACGTG 1 cut(s) 527
PspEI GGTNACC 1 cut(s) 951
PspFI CCCAGC 1 cut(s) 376
PspGI CCWGG 1 cut(s) 1215
PspN4I GGNNCC 4 cut(s) 277, 369, 809, 1101
PspPI GGNCC 3 cut(s) 276, 551, 808
PsuI RGATCY 1 cut(s) 1084
RsaI GTAC 4 cut(s) 487, 557, 642, 865
RsaNI GTAC 4 cut(s) 486, 556, 641, 864
RseI CAYNNNNRTG 1 cut(s) 723
SaqAI TTAA 3 cut(s) 161, 453, 1049
SatI GCNGC 2 cut(s) 65, 192
Sau3AI GATC 6 cut(s) 99, 169, 678, 829, 1076, 1084
Sau96I GGNCC 3 cut(s) 276, 551, 808
ScaI AGTACT 1 cut(s) 487
SchI GAGTC 3 cut(s) 407, 506, 986
ScrFI CCNGG 2 cut(s) 419, 1217
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 1225
SinI GGWCC 3 cut(s) 276, 551, 808
SmiMI CAYNNNNRTG 1 cut(s) 723
SmlI CTYRAG 1 cut(s) 1175
SmoI CTYRAG 1 cut(s) 1175
SnaBI TACGTA 1 cut(s) 349
Sse9I AATT 5 cut(s) 120, 834, 891, 1003, 1204
SsiI CCGC 1 cut(s) 108
SspI AATATT 2 cut(s) 294, 435
StyD4I CCNGG 2 cut(s) 417, 1215
StyI CCWWGG 1 cut(s) 803
TaaI ACNGT 8 cut(s) 202, 334, 425, 555, 614, 1036, 1111, 1165
TaiI ACGT 6 cut(s) 129, 161, 351, 470, 529, 1320
TaqI TCGA 6 cut(s) 25, 537, 715, 734, 874, 1079
TaqII GACCGA 1 cut(s) 744
TasI AATT 5 cut(s) 120, 834, 891, 1003, 1204
TatI WGTACW 1 cut(s) 485
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 3 cut(s) 161, 453, 1049
Tru9I TTAA 3 cut(s) 161, 453, 1049
TscAI CASTG 4 cut(s) 256, 430, 668, 1170
TseFI GTSAC 1 cut(s) 978
TseI GCWGC 2 cut(s) 64, 191
Tsp45I GTSAC 1 cut(s) 978
TspDTI ATGAA 4 cut(s) 587, 762, 1234, 1282
TspRI CASTG 4 cut(s) 256, 430, 668, 1170
VpaK11BI GGWCC 3 cut(s) 276, 551, 808
XbaI TCTAGA 1 cut(s) 1123
XmaJI CCTAGG 1 cut(s) 803
XmiI GTMKAC 4 cut(s) 411, 513, 1041, 1221
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.