Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012079

Physical Location & Seq

Genomic Coordinates Reverse (-)

42111993 .. 42112697

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0305400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAACCACGAACTCTGCAACTAATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATGTTTACTACGACAAGGGAGTTAAGACCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGCAACAGTATGGACAGGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGTAATCAGGCTGCTCAAGTGCCCGTGGGAACTAGTTCTACTGGTACTGGTGGATTCATTGATATTAATTTTGGGTCCACTAGTCCTACTGGTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGGTGCTGGTGGATCCATTGATCTCAATTTTGGTTCCACAACAGGAGGACAATCTTCCATGGAACAACGAGGAGGAGTTCGCCAGGAGTTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTATGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004576 GO:0004579 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030312 GO:0031090 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Ribophorin_I

Protein Analysis

234

Amino Acids

25.37

Weight (kDa)

5.02

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 99	4.7e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01720
fragaria_vesca	FvH4_7g19320 FvH4_7g19320 FvH4_7g19320 FvH4_7g19320
malus_domestica	MD01G1107800.v1.1 MD07G1173400.v1.1
prunus_persica	Prupe.2G212600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363201
rosa_laevigata	RLG00000027584
rosa_multiflora	Rmu_sc0001770.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293380
rosa_rugosa	Rorug01G0305400 Rorug01G0305500
rosa_samantha	Rh1AG314200 Rh1BG277700 Rh1CG294100 Rh1DG308400
rosa_wichuraiana	Rw1G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	573
AccIII	TCCGGA	1 cut(s)	689
AciI	CCGC	1 cut(s)	639
AclWI	GGATC	5 cut(s)	402, 415, 450, 463, 661
AcyI	GRCGYC	1 cut(s)	570
AfaI	GTAC	2 cut(s)	115, 352
AfiI	CCNNNNNNNGG	1 cut(s)	560
AgsI	TTSAA	1 cut(s)	536
AhlI	ACTAGT	3 cut(s)	338, 386, 434
AjnI	CCWGG	2 cut(s)	116, 525
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	4 cut(s)	31, 223, 673, 695
AluI	AGCT	4 cut(s)	31, 223, 673, 695
Alw21I	GWGCWC	2 cut(s)	561, 675
Alw26I	GTCTC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	557
AlwI	GGATC	5 cut(s)	402, 415, 450, 463, 661
Ama87I	CYCGRG	1 cut(s)	285
Aor13HI	TCCGGA	1 cut(s)	689
ApaLI	GTGCAC	1 cut(s)	557
ApeKI	GCWGC	3 cut(s)	74, 223, 317
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	2 cut(s)	340, 540
AspLEI	GCGC	1 cut(s)	611
AspS9I	GGNCC	2 cut(s)	381, 429
AsuC2I	CCSGG	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	381, 429
BaeGI	GKGCMC	2 cut(s)	330, 561
BamHI	GGATCC	2 cut(s)	407, 455
BanII	GRGCYC	2 cut(s)	286, 675
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	561, 675
BbvI	GCAGC	3 cut(s)	86, 210, 304
BccI	CCATC	2 cut(s)	50, 694
BceAI	ACGGC	2 cut(s)	96, 577
BciT130I	CCWGG	2 cut(s)	118, 527
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	3 cut(s)	338, 386, 434
BfaI	CTAG	3 cut(s)	339, 387, 435
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	3 cut(s)	75, 224, 318
BlpI	GCTNAGC	1 cut(s)	674
BlsI	GCNGC	3 cut(s)	76, 225, 319
Bme1390I	CCNGG	3 cut(s)	79, 118, 527
Bme18I	GGWCC	2 cut(s)	381, 429
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	381, 429
BmiI	GGNNCC	7 cut(s)	6, 269, 382, 409, 430, 457, 478
BmrFI	CCNGG	3 cut(s)	79, 118, 527
BpiI	GAAGAC	1 cut(s)	593
BpmI	CTGGAG	3 cut(s)	117, 203, 642
Bpu10I	CCTNAGC	1 cut(s)	634
Bpu1102I	GCTNAGC	1 cut(s)	674
BpuEI	CTTGAG	3 cut(s)	137, 306, 689
BpuMI	CCSGG	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	570
BsaJI	CCNNGG	4 cut(s)	330, 501, 597, 649
BsaWI	WCCGGW	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse1I	ACTGG	5 cut(s)	352, 358, 400, 448, 659
BseAI	TCCGGA	1 cut(s)	689
BseBI	CCWGG	2 cut(s)	118, 527
BseDI	CCNNGG	4 cut(s)	330, 501, 597, 649
BseGI	GGATG	3 cut(s)	61, 163, 686
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseMII	CTCAG	2 cut(s)	648, 688
BseNI	ACTGG	5 cut(s)	352, 358, 400, 448, 659
BseRI	GAGGAG	2 cut(s)	528, 531
BseSI	GKGCMC	2 cut(s)	330, 561
BseXI	GCAGC	3 cut(s)	86, 210, 304
BseYI	CCCAGC	1 cut(s)	39
BsiHKAI	GWGCWC	2 cut(s)	561, 675
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	78, 690
BslI	CCNNNNNNNGG	1 cut(s)	560
BsmAI	GTCTC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	4 cut(s)	286, 330, 561, 675
Bsp13I	TCCGGA	1 cut(s)	689
Bsp143I	GATC	6 cut(s)	136, 210, 407, 455, 463, 653
Bsp1720I	GCTNAGC	1 cut(s)	674
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	1 cut(s)	639
BspCNI	CTCAG	2 cut(s)	647, 687
BspEI	TCCGGA	1 cut(s)	689
BspLI	GGNNCC	7 cut(s)	6, 269, 382, 409, 430, 457, 478
BspPI	GGATC	5 cut(s)	402, 415, 450, 463, 661
BsrI	ACTGG	5 cut(s)	352, 358, 400, 448, 659
BssECI	CCNNGG	4 cut(s)	330, 501, 597, 649
BssMI	GATC	6 cut(s)	136, 210, 407, 455, 463, 653
BssNI	GRCGYC	1 cut(s)	570
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	118, 527
Bst4CI	ACNGT	2 cut(s)	231, 650
Bst6I	CTCTTC	2 cut(s)	296, 546
BstACI	GRCGYC	1 cut(s)	570
BstDEI	CTNAG	2 cut(s)	634, 674
BstDSI	CCRYGG	3 cut(s)	330, 501, 649
BstEII	GGTNACC	1 cut(s)	578
BstF5I	GGATG	3 cut(s)	61, 163, 686
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	6 cut(s)	139, 213, 410, 458, 466, 656
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	6 cut(s)	136, 210, 407, 455, 463, 653
BstNI	CCWGG	2 cut(s)	118, 527
BstPI	GGTNACC	1 cut(s)	578
BstSCI	CCNGG	3 cut(s)	77, 116, 525
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	2 cut(s)	330, 561
BstV1I	GCAGC	3 cut(s)	86, 210, 304
BstV2I	GAAGAC	1 cut(s)	593
BstX2I	RGATCY	4 cut(s)	210, 407, 455, 653
BstYI	RGATCY	4 cut(s)	210, 407, 455, 653
BtgI	CCRYGG	3 cut(s)	330, 501, 649
BtsCI	GGATG	3 cut(s)	61, 163, 686
CfoI	GCGC	1 cut(s)	611
Cfr13I	GGNCC	2 cut(s)	381, 429
CsiI	ACCWGGT	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	114, 351
CviAII	CATG	1 cut(s)	502
CviQI	GTAC	2 cut(s)	114, 351
DdeI	CTNAG	2 cut(s)	634, 674
DpnI	GATC	6 cut(s)	138, 212, 409, 457, 465, 655
DpnII	GATC	6 cut(s)	136, 210, 407, 455, 463, 653
Eam1104I	CTCTTC	2 cut(s)	296, 546
EarI	CTCTTC	2 cut(s)	296, 546
Ecl136II	GAGCTC	1 cut(s)	673
Eco130I	CCWWGG	1 cut(s)	501
Eco24I	GRGCYC	2 cut(s)	286, 675
Eco47I	GGWCC	2 cut(s)	381, 429
Eco53kI	GAGCTC	1 cut(s)	673
Eco88I	CYCGRG	1 cut(s)	285
Eco91I	GGTNACC	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	673
EcoO65I	GGTNACC	1 cut(s)	578
EcoRII	CCWGG	2 cut(s)	116, 525
EcoT14I	CCWWGG	1 cut(s)	501
EcoT38I	GRGCYC	2 cut(s)	286, 675
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	1 cut(s)	505
FaiI	YATR	6 cut(s)	201, 234, 503, 576, 613, 615
FatI	CATG	1 cut(s)	501
FauNDI	CATATG	1 cut(s)	613
Fnu4HI	GCNGC	3 cut(s)	75, 224, 318
FokI	GGATG	3 cut(s)	68, 170, 673
FriOI	GRGCYC	2 cut(s)	286, 675
Fsp4HI	GCNGC	3 cut(s)	75, 224, 318
FspBI	CTAG	3 cut(s)	339, 387, 435
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	3 cut(s)	75, 224, 318
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	3 cut(s)	117, 203, 642
HapII	CCGG	2 cut(s)	78, 690
HhaI	GCGC	1 cut(s)	611
Hin1I	GRCGYC	1 cut(s)	570
Hin1II	CATG	1 cut(s)	505
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HinfI	GANTC	3 cut(s)	124, 147, 360
HpaII	CCGG	2 cut(s)	78, 690
Hpy166II	GTNNAC	4 cut(s)	163, 384, 432, 559
Hpy188I	TCNGA	1 cut(s)	598
Hpy188III	TCNNGA	6 cut(s)	134, 206, 271, 287, 668, 690
Hpy8I	GTNNAC	4 cut(s)	163, 384, 432, 559
HpyAV	CCTTC	1 cut(s)	596
HpyCH4III	ACNGT	2 cut(s)	231, 650
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	3 cut(s)	19, 226, 559
HpyF3I	CTNAG	2 cut(s)	634, 674
HpySE526I	ACGT	1 cut(s)	570
Hsp92I	GRCGYC	1 cut(s)	570
Hsp92II	CATG	1 cut(s)	505
HspAI	GCGC	1 cut(s)	609
Kpn2I	TCCGGA	1 cut(s)	689
Kzo9I	GATC	6 cut(s)	136, 210, 407, 455, 463, 653
LmnI	GCTCC	2 cut(s)	28, 692
Lsp1109I	GCAGC	3 cut(s)	86, 210, 304
MabI	ACCWGGT	1 cut(s)	116
MaeI	CTAG	3 cut(s)	339, 387, 435
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	2 cut(s)	578, 641
MalI	GATC	6 cut(s)	138, 212, 409, 457, 465, 655
MboI	GATC	6 cut(s)	136, 210, 407, 455, 463, 653
MboII	GAAGA	4 cut(s)	313, 489, 533, 598
MflI	RGATCY	4 cut(s)	210, 407, 455, 653
MhlI	GDGCHC	4 cut(s)	286, 330, 561, 675
MluCI	AATT	3 cut(s)	373, 421, 469
MroI	TCCGGA	1 cut(s)	689
MroXI	GAANNNNTTC	2 cut(s)	340, 540
MseI	TTAA	2 cut(s)	180, 372
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	2 cut(s)	78, 690
MspR9I	CCNGG	3 cut(s)	79, 118, 527
MvaI	CCWGG	2 cut(s)	118, 527
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	501
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	6 cut(s)	136, 210, 407, 455, 463, 653
NlaIII	CATG	1 cut(s)	505
NlaIV	GGNNCC	7 cut(s)	6, 269, 382, 409, 430, 457, 478
PaeR7I	CTCGAG	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PdmI	GAANNNNTTC	2 cut(s)	340, 540
PfeI	GAWTC	3 cut(s)	124, 147, 360
PkrI	GCNGC	3 cut(s)	76, 225, 319
PshBI	ATTAAT	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	675
Psp6I	CCWGG	2 cut(s)	116, 525
PspEI	GGTNACC	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	2 cut(s)	116, 525
PspN4I	GGNNCC	7 cut(s)	6, 269, 382, 409, 430, 457, 478
PspPI	GGNCC	2 cut(s)	381, 429
PsrI	GAACNNNNNNTAC	2 cut(s)	328, 360
PsuI	RGATCY	4 cut(s)	210, 407, 455, 653
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	2 cut(s)	115, 352
RsaNI	GTAC	2 cut(s)	114, 351
SacI	GAGCTC	1 cut(s)	675
SaqAI	TTAA	2 cut(s)	180, 372
SatI	GCNGC	3 cut(s)	75, 224, 318
Sau3AI	GATC	6 cut(s)	136, 210, 407, 455, 463, 653
Sau96I	GGNCC	2 cut(s)	381, 429
ScrFI	CCNGG	3 cut(s)	79, 118, 527
SduI	GDGCHC	4 cut(s)	286, 330, 561, 675
SetI	ASST	9 cut(s)	33, 122, 225, 243, 308, 573, 607, 675, 697
SexAI	ACCWGGT	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	2 cut(s)	381, 429
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	4 cut(s)	152, 285, 321, 668
SmoI	CTYRAG	4 cut(s)	152, 285, 321, 668
SpeI	ACTAGT	3 cut(s)	338, 386, 434
Sse9I	AATT	3 cut(s)	373, 421, 469
SsiI	CCGC	1 cut(s)	639
SspMI	CTAG	3 cut(s)	339, 387, 435
SstI	GAGCTC	1 cut(s)	675
StyD4I	CCNGG	3 cut(s)	77, 116, 525
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	231, 650
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	2 cut(s)	51, 286
TasI	AATT	3 cut(s)	373, 421, 469
TfiI	GAWTC	3 cut(s)	124, 147, 360
Tru1I	TTAA	2 cut(s)	180, 372
Tru9I	TTAA	2 cut(s)	180, 372
TseI	GCWGC	3 cut(s)	74, 223, 317
TspDTI	ATGAA	2 cut(s)	314, 352
TspGWI	ACGGA	1 cut(s)	110
VneI	GTGCAC	1 cut(s)	557
VpaK11BI	GGWCC	2 cut(s)	381, 429
VspI	ATTAAT	1 cut(s)	372
XhoI	CTCGAG	1 cut(s)	285
XmnI	GAANNNNTTC	2 cut(s)	340, 540
XspI	CTAG	3 cut(s)	339, 387, 435
ZraI	GACGTC	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.