Rroxscaffold_4G00293380

Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser Thr consensus motif in nascent polypeptide chains

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
13684374 .. 13689422
5049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293380.1

Sequence Viewer

Length: 1401 bp
ATGGAAGCTCTGCCAAGCTTAGCTCGATTACTCCTAGCCTTGACGATCTTCTCCAGTCTCTCACTGCTTGCTTGCTCCTCTTCGCTTCAGGACCTCCAGATCGCCAACGCCGAGCGCAGAATTGACGTGACCTCTCATATCATCAAGGTTTTCTTGACGTTAAAGGTGGAAAATACTGGCACTTCTCCTGTTTCAGAAGTGCTTCTTGCCTTCCCACCTACACAGGTTGATCACATAGCATCACTCAAAGCCGCTGTTACCATTGGAAAGAAGAAAAAGAAAAGTTATGTGCCTCTTGAAGTGAATCCTACTGAACTACCTGATGCACCAAATGGGACTAAGTACTTTAAAATATTGTTGCTCAACCCATTGAGTGCTGGTGAAACTGCAACACTAGAAGTGCTTTATATATTGACACATTCTCTGGAGCCTTTCCCAGCAGAAATAAGCCAATCGGAGTCACAGTTGGTCTATTACCGGGATAGTGCAATAATATTGTCTCCCTATTATATTAAGCAACAGACTACTTTTATACGAACTCCTAGTACTAAGGTGGAGTCATTTACTAGAGTAGAACCCACTACACGTGCTGGTACTGAACTGAAGTATGGACAGTACAAGGATTGCCCCGCATACTCATATTCTCCAGTTCTTGTGCATTTTGAGAATAACAGTCCATTTGCTGTTGTTGAGGAACTTGTACGTGAGGTGGAAATATCTCACTGGGGAAGTCTTCAGATCACAGAACATTACACTCTAGCACATGCTGGTGCTCGACACAAAGGTGTTTTTTCGAGGGTTGATTATCAAGGTCGGTCTAGTGGTGTCTCTTCATTCAAACATCTCCTAGCAAGACTACCTCCTAGGGTCCATTCAGTCTTCTACCGAGATCAAATTGGGAACATCTCGTCATCACATTTGCGTACAGATTATCGAAGGTCAGATCTTGAAATTGAACCAAGGTATCCTTTATTTGGAGGTTGGAAAGCTACTTTTTTAATCGGGTATGGACTACCATTGCAAGACTTCCTTTTTGAGTCACCTGATGGCAGGCGATACCTCAATTTCACCTTTGGTTGTCCTCTTGCTGAGACGGTGGTAGACAAGTTAACCCTCAAAGTTGTGCTACCAGAGGGATCGAAAGATCCATCTGCTGTGGTTCCTTTTACAGTTGAGCAACATCTAGAGACCAAATACTCATACCTTGATGTCGTTGGGAGGACAGTGGTCGTTCTTGAGAAGAAAAATGTAGTTCCGGAGCATAATTCTCCTTTCCAGGTCTACTACAGCTTCAACCCAGTTTTCATGTTGGCAGAACCGCTGATGTTGATATCTGTATTCTTCTTCCTTTTCATGGCTAGTGTAGCTTACCTACACGTAGATTTTTCTATCAGCAAGTGA

Protein Analysis

466

Amino Acids

52.37

Weight (kDa)

6.93

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribophorin_I PF04597 33 - 457 5.3e-147 Ribophorin I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012079)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1101, 1281
AccIII TCCGGA 1 cut(s) 1255
AciI CCGC 3 cut(s) 252, 630, 1319
AclWI GGATC 2 cut(s) 1139, 1144
AcuI CTGAAG 3 cut(s) 71, 623, 719
AcvI CACGTG 1 cut(s) 587
AfaI GTAC 6 cut(s) 344, 547, 595, 617, 702, 925
AfiI CCNNNNNNNGG 2 cut(s) 974, 1354
AflIII ACRYGT 2 cut(s) 584, 1375
AgsI TTSAA 5 cut(s) 299, 838, 950, 956, 1294
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 1 cut(s) 1275
AleI CACNNNNGTG 1 cut(s) 783
AluBI AGCT 6 cut(s) 8, 18, 23, 989, 1290, 1367
AluI AGCT 6 cut(s) 8, 18, 23, 989, 1290, 1367
Alw21I GWGCWC 1 cut(s) 775
Alw26I GTCTC 5 cut(s) 62, 504, 832, 1085, 1181
AlwI GGATC 2 cut(s) 1139, 1144
Aor13HI TCCGGA 1 cut(s) 1255
ArsI GACNNNNNNTTYG 2 cut(s) 1016, 1048
Asp700I GAANNNNTTC 1 cut(s) 201
AspA2I CCTAGG 1 cut(s) 863
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 2 cut(s) 91, 868
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 3 cut(s) 392, 1032, 1060
AvaII GGWCC 2 cut(s) 91, 868
AvrII CCTAGG 1 cut(s) 863
BaeI ACNNNNGTAYC 2 cut(s) 947, 980
BbrPI CACGTG 1 cut(s) 587
BbsI GAAGAC 2 cut(s) 725, 871
Bbv12I GWGCWC 1 cut(s) 775
BccI CCATC 2 cut(s) 1040, 1156
BciT130I CCWGG 1 cut(s) 1277
BciVI GTATCC 1 cut(s) 975
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 5 cut(s) 62, 504, 832, 1085, 1181
BfmI CTRYAG 1 cut(s) 1285
BfuI GTATCC 1 cut(s) 975
BglII AGATCT 1 cut(s) 943
BisI GCNGC 1 cut(s) 252
BlnI CCTAGG 1 cut(s) 863
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 253
BmcAI AGTACT 2 cut(s) 344, 547
Bme1390I CCNGG 2 cut(s) 479, 1277
Bme18I GGWCC 2 cut(s) 91, 868
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 91, 868
BmiI GGNNCC 3 cut(s) 429, 869, 1161
BmrFI CCNGG 2 cut(s) 479, 1277
BmrI ACTGGG 2 cut(s) 733, 1292
BmsI GCATC 2 cut(s) 248, 313
BmuI ACTGGG 2 cut(s) 733, 1292
BoxI GACNNNNGTC 1 cut(s) 1226
BpiI GAAGAC 2 cut(s) 725, 871
BpmI CTGGAG 4 cut(s) 37, 80, 446, 630
Bpu1102I GCTNAGC 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 1256
BpuMI CCSGG 1 cut(s) 479
BsaAI YACGTR 3 cut(s) 587, 704, 1378
BsaI GGTCTC 1 cut(s) 1181
BsaJI CCNNGG 2 cut(s) 863, 959
BsaWI WCCGGW 1 cut(s) 1255
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 974, 1354
Bse1I ACTGG 5 cut(s) 54, 181, 647, 728, 1298
Bse3DI GCAATG 1 cut(s) 1016
BseAI TCCGGA 1 cut(s) 1255
BseBI CCWGG 1 cut(s) 1277
BseDI CCNNGG 2 cut(s) 863, 959
BseLI CCNNNNNNNGG 2 cut(s) 974, 1354
BseMI GCAATG 1 cut(s) 1016
BseMII CTCAG 1 cut(s) 1080
BseNI ACTGG 5 cut(s) 54, 181, 647, 728, 1298
BseRI GAGGAG 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 775
BsiSI CCGG 2 cut(s) 478, 1256
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 2 cut(s) 974, 1354
BsmAI GTCTC 5 cut(s) 62, 504, 832, 1085, 1181
BsmBI CGTCTC 1 cut(s) 1085
BsmFI GGGAC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 1181
Bsp1286I GDGCHC 1 cut(s) 775
Bsp13I TCCGGA 1 cut(s) 1255
Bsp143I GATC 8 cut(s) 45, 99, 229, 738, 889, 943, 1136, 1144
Bsp1720I GCTNAGC 1 cut(s) 19
BspACI CCGC 3 cut(s) 252, 630, 1319
BspCNI CTCAG 1 cut(s) 1081
BspEI TCCGGA 1 cut(s) 1255
BspLI GGNNCC 3 cut(s) 429, 869, 1161
BspPI GGATC 2 cut(s) 1139, 1144
BspTNI GGTCTC 1 cut(s) 1181
BsrDI GCAATG 1 cut(s) 1016
BsrI ACTGG 5 cut(s) 54, 181, 647, 728, 1298
BssECI CCNNGG 2 cut(s) 863, 959
BssMI GATC 8 cut(s) 45, 99, 229, 738, 889, 943, 1136, 1144
BssT1I CCWWGG 2 cut(s) 863, 959
Bst2UI CCWGG 1 cut(s) 1277
Bst4CI ACNGT 6 cut(s) 465, 615, 674, 1096, 1171, 1225
Bst6I CTCTTC 2 cut(s) 85, 835
BstBAI YACGTR 3 cut(s) 587, 704, 1378
BstC8I GCNNGC 3 cut(s) 69, 73, 1052
BstDEI CTNAG 4 cut(s) 19, 339, 549, 1089
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 8 cut(s) 48, 102, 232, 741, 892, 946, 1139, 1147
BstMAI GTCTC 5 cut(s) 62, 504, 832, 1085, 1181
BstMBI GATC 8 cut(s) 45, 99, 229, 738, 889, 943, 1136, 1144
BstMWI GCNNNNNNNGC 1 cut(s) 1364
BstNI CCWGG 1 cut(s) 1277
BstNSI RCATGY 1 cut(s) 767
BstPAI GACNNNNGTC 1 cut(s) 1226
BstSCI CCNGG 2 cut(s) 477, 1275
BstSFI CTRYAG 1 cut(s) 1285
BstV2I GAAGAC 2 cut(s) 725, 871
BstX2I RGATCY 2 cut(s) 943, 1144
BstYI RGATCY 2 cut(s) 943, 1144
BsuI GTATCC 1 cut(s) 975
BtrI CACGTC 1 cut(s) 127
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 3 cut(s) 62, 721, 1230
Cac8I GCNNGC 3 cut(s) 69, 73, 1052
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 2 cut(s) 91, 868
Csp6I GTAC 6 cut(s) 343, 546, 594, 616, 701, 924
CviAII CATG 3 cut(s) 764, 1306, 1354
CviQI GTAC 6 cut(s) 343, 546, 594, 616, 701, 924
DdeI CTNAG 4 cut(s) 19, 339, 549, 1089
DpnI GATC 8 cut(s) 47, 101, 231, 740, 891, 945, 1138, 1146
DpnII GATC 8 cut(s) 45, 99, 229, 738, 889, 943, 1136, 1144
DraI TTTAAA 1 cut(s) 349
Eam1104I CTCTTC 2 cut(s) 85, 835
EarI CTCTTC 2 cut(s) 85, 835
Eco130I CCWWGG 2 cut(s) 863, 959
Eco31I GGTCTC 1 cut(s) 1181
Eco32I GATATC 1 cut(s) 1332
Eco47I GGWCC 2 cut(s) 91, 868
Eco57I CTGAAG 3 cut(s) 71, 623, 719
Eco72I CACGTG 1 cut(s) 587
EcoO109I RGGNCCY 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 1275
EcoRV GATATC 1 cut(s) 1332
EcoT14I CCWWGG 2 cut(s) 863, 959
ErhI CCWWGG 2 cut(s) 863, 959
Esp3I CGTCTC 1 cut(s) 1085
FaeI CATG 3 cut(s) 767, 1309, 1357
FalI AAGNNNNNCTT 8 cut(s) 137, 169, 189, 221, 952, 984, 1014, 1046
FaqI GGGAC 1 cut(s) 349
FatI CATG 3 cut(s) 763, 1305, 1353
FauI CCCGC 1 cut(s) 637
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 2 cut(s) 1101, 1281
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
GlaI GCGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 252
GsaI CCCAGC 1 cut(s) 440
GsuI CTGGAG 4 cut(s) 37, 80, 446, 630
HapII CCGG 2 cut(s) 478, 1256
HhaI GCGC 1 cut(s) 117
Hin1II CATG 3 cut(s) 767, 1309, 1357
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 1 cut(s) 1110
HindII GTYRAC 1 cut(s) 1110
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 4 cut(s) 304, 458, 557, 1037
HpaI GTTAAC 1 cut(s) 1110
HpaII CCGG 2 cut(s) 478, 1256
HphI GGTGA 3 cut(s) 392, 1032, 1060
Hpy166II GTNNAC 3 cut(s) 1102, 1110, 1282
Hpy188I TCNGA 4 cut(s) 196, 457, 738, 943
Hpy188III TCNNGA 9 cut(s) 89, 97, 154, 296, 425, 947, 1184, 1235, 1256
Hpy8I GTNNAC 3 cut(s) 1102, 1110, 1282
HpyAV CCTTC 2 cut(s) 220, 930
HpyCH4III ACNGT 6 cut(s) 465, 615, 674, 1096, 1171, 1225
HpyCH4IV ACGT 5 cut(s) 126, 158, 586, 703, 1377
HpyCH4V TGCA 5 cut(s) 326, 389, 488, 658, 1021
HpyF10VI GCNNNNNNNGC 1 cut(s) 1364
HpyF3I CTNAG 4 cut(s) 19, 339, 549, 1089
HpySE526I ACGT 5 cut(s) 126, 158, 586, 703, 1377
Hsp92II CATG 3 cut(s) 767, 1309, 1357
HspAI GCGC 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 1255
Ksp22I TGATCA 1 cut(s) 229
KspAI GTTAAC 1 cut(s) 1110
Kzo9I GATC 8 cut(s) 45, 99, 229, 738, 889, 943, 1136, 1144
LmnI GCTCC 3 cut(s) 80, 427, 1258
LweI GCATC 2 cut(s) 248, 313
MaeII ACGT 5 cut(s) 126, 158, 586, 703, 1377
MaeIII GTNAC 4 cut(s) 127, 256, 459, 1038
MalI GATC 8 cut(s) 47, 101, 231, 740, 891, 945, 1138, 1146
MboI GATC 8 cut(s) 45, 99, 229, 738, 889, 943, 1136, 1144
MboII GAAGA 9 cut(s) 40, 72, 283, 725, 822, 871, 1252, 1333, 1336
MflI RGATCY 2 cut(s) 943, 1144
MhlI GDGCHC 1 cut(s) 775
MluCI AATT 5 cut(s) 120, 894, 951, 1063, 1264
MlyI GAGTC 3 cut(s) 467, 566, 1046
MmeI TCCRAC 1 cut(s) 962
MroI TCCGGA 1 cut(s) 1255
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 5 cut(s) 161, 348, 513, 998, 1109
MslI CAYNNNNRTG 2 cut(s) 768, 783
MspA1I CMGCKG 2 cut(s) 254, 1321
MspI CCGG 2 cut(s) 478, 1256
MspR9I CCNGG 2 cut(s) 479, 1277
MvaI CCWGG 1 cut(s) 1277
MwoI GCNNNNNNNGC 1 cut(s) 1364
NciI CCSGG 1 cut(s) 479
NdeII GATC 8 cut(s) 45, 99, 229, 738, 889, 943, 1136, 1144
NlaIII CATG 3 cut(s) 767, 1309, 1357
NlaIV GGNNCC 3 cut(s) 429, 869, 1161
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 3 cut(s) 127, 459, 1038
NspI RCATGY 1 cut(s) 767
OliI CACNNNNGTG 1 cut(s) 783
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 3 cut(s) 466, 565, 1045
PmaCI CACGTG 1 cut(s) 587
PmlI CACGTG 1 cut(s) 587
PpsI GAGTC 3 cut(s) 466, 565, 1045
Ppu21I YACGTR 3 cut(s) 587, 704, 1378
PpuMI RGGWCCY 1 cut(s) 91
PshAI GACNNNNGTC 1 cut(s) 1226
Psp5II RGGWCCY 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 1275
PspCI CACGTG 1 cut(s) 587
PspFI CCCAGC 1 cut(s) 436
PspGI CCWGG 1 cut(s) 1275
PspN4I GGNNCC 3 cut(s) 429, 869, 1161
PspPI GGNCC 2 cut(s) 91, 868
PspPPI RGGWCCY 1 cut(s) 91
PsrI GAACNNNNNNTAC 2 cut(s) 529, 561
PsuI RGATCY 2 cut(s) 943, 1144
RsaI GTAC 6 cut(s) 344, 547, 595, 617, 702, 925
RsaNI GTAC 6 cut(s) 343, 546, 594, 616, 701, 924
RseI CAYNNNNRTG 2 cut(s) 768, 783
SaqAI TTAA 5 cut(s) 161, 348, 513, 998, 1109
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 8 cut(s) 45, 99, 229, 738, 889, 943, 1136, 1144
Sau96I GGNCC 2 cut(s) 91, 868
ScaI AGTACT 2 cut(s) 344, 547
SchI GAGTC 3 cut(s) 467, 566, 1046
ScrFI CCNGG 2 cut(s) 479, 1277
SduI GDGCHC 1 cut(s) 775
SfaNI GCATC 2 cut(s) 248, 313
SfcI CTRYAG 1 cut(s) 1285
SinI GGWCC 2 cut(s) 91, 868
SmiMI CAYNNNNRTG 2 cut(s) 768, 783
SmlI CTYRAG 1 cut(s) 1235
SmoI CTYRAG 1 cut(s) 1235
Sse9I AATT 5 cut(s) 120, 894, 951, 1063, 1264
SsiI CCGC 3 cut(s) 252, 630, 1319
SspI AATATT 2 cut(s) 354, 495
StyD4I CCNGG 2 cut(s) 477, 1275
StyI CCWWGG 2 cut(s) 863, 959
TaaI ACNGT 6 cut(s) 465, 615, 674, 1096, 1171, 1225
TaiI ACGT 5 cut(s) 129, 161, 589, 706, 1380
TaqI TCGA 5 cut(s) 25, 775, 794, 934, 1139
TaqII GACCGA 1 cut(s) 804
TasI AATT 5 cut(s) 120, 894, 951, 1063, 1264
TatI WGTACW 3 cut(s) 342, 545, 615
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 5 cut(s) 161, 348, 513, 998, 1109
Tru9I TTAA 5 cut(s) 161, 348, 513, 998, 1109
TscAI CASTG 3 cut(s) 69, 728, 1230
TseFI GTSAC 3 cut(s) 127, 459, 1038
Tsp45I GTSAC 3 cut(s) 127, 459, 1038
TspDTI ATGAA 3 cut(s) 822, 1294, 1342
TspRI CASTG 3 cut(s) 69, 728, 1230
VpaK11BI GGWCC 2 cut(s) 91, 868
XbaI TCTAGA 1 cut(s) 1183
XceI RCATGY 1 cut(s) 767
XmaJI CCTAGG 1 cut(s) 863
XmiI GTMKAC 2 cut(s) 1101, 1281
XmnI GAANNNNTTC 1 cut(s) 201
ZrmI AGTACT 2 cut(s) 344, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.