Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012079

Physical Location & Seq

Genomic Coordinates Forward (+)

24440300 .. 24444428

Gene Structure 4129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G212600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGACGCTTTGCGAAGCTTGGGTCGAGTAATCGTAGCTTTCTGGATCTTGTCCCATCTCTCACTGCTTGCTTACTCCTCTTCCCCTCAGGATCTCCAGATCCTCAGCGCTGAGCGCAGAATTGACTTGTCCTCTCACATTGTTAAGGTTTTCTTGACGTTAAAGGTTGAAAATACTGGTGGATCTCCTGTTTCGGAAGTACTTCTTGCTTTTCCACCTACACAGGTTGATCATATAGCTTCGCTCAAAGCAGCTCTCACTGTTGGAAAAAAGAAAAAGAAAAGCTATGTGCCTCTTGAAGTGAATCCCACTGACCTCCCTGATGCACCAAATCAGACCAAATATTTTTCCATATCTTTGCTCAACCCATTAAATGCAGGTGAAACTGCAACATTAGAAGTGCTTTATATATTGACACATTCTCTGGAGCCTTTCCCTGCAGAGATAAACCAAGCAGAGTCTCAGTTGGTCTATTTTCGTGATAGTGCAATAATATTGTCACCATATTATATTAAGCAGCAGACTACTTTTATAAGAACACCTAGTACTAAGGTGGAATCATTTACAAGAGTAGAGTCCACTAACCGCGCTGGTACTGAAATAAAGTATGGCCCTTACAAGGATCGCCCTGCATACTCTTATTCTCCAGTAATTGTTCATTTTGAGAATAACAAGCCATTTGCTGTCGTTGAGGAGCTTGTACGCGAAGTGGAAATATCTCATTGGGGCAATCTTCAGATCACAGAGCATTACAGGTTGTCACATGCTGGTGCACGACATAAAGGTGTTTTTTCGAGGGTTGAATATCAATCTAGGCCATCTTCTGGTGGAATTTCTTCATTCAAACATCTTCTAGCCAGACTACCTCCTAGAGTCCATTCTGTCTTTTACCGAGATGAAATTGGCAACATCTCGTCATCACATTTACGTATAGATTATCTAAAGTCAGATCTTGAAATTGAGCCAAGGTATCCTTTGTTTGGAGGTTGGAAAGCTACTTTTGTGATTGGGTATGGGCTACCATTGGAAGACTTCCTTTTTGAGTCACCTGATGGCAGGCGATACCTCAACTTCACTTTTGGTTGTCCTCTTGCTGAGACGGTGGTAGACAAGTTAATCATAAAAGTTGTGCTACCAGAGGGATCAAAAGATCCTTCTGCTGTGGTTCCTTTCTCGGTTAAGCAACATTTAGAGACCAAATATTCATACCTTGATGTTGCTGGAAGGACAGTGGTGGTTCTTGAAAAGGAAAACGTAGTTCCAGAGCACAACTCTCCTTTCCAGGTTTACTACAGCTTCAACCCAATTTTTATGCTGGCAGAACCACTAATGTTAGTGTCTACATTTTTCTTCGTGTTCATGGCTAGTATAGCTTACCTACACATAGATTTTTCGATATGCAAGACATCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004576 GO:0004579 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030312 GO:0031090 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Ribophorin_I

Protein Analysis

472

Amino Acids

53.11

Weight (kDa)

6.96

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01720
fragaria_vesca	FvH4_7g19320 FvH4_7g19320 FvH4_7g19320 FvH4_7g19320
malus_domestica	MD01G1107800.v1.1 MD07G1173400.v1.1
prunus_persica	Prupe.2G212600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363201
rosa_laevigata	RLG00000027584
rosa_multiflora	Rmu_sc0001770.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293380
rosa_rugosa	Rorug01G0305400 Rorug01G0305500
rosa_samantha	Rh1AG314200 Rh1BG277700 Rh1CG294100 Rh1DG308400
rosa_wichuraiana	Rw1G027840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
AarI	CACCTGC	1 cut(s)	368
Acc36I	ACCTGC	1 cut(s)	368
AccB7I	CCANNNNNTGG	1 cut(s)	824
AccI	GTMKAC	2 cut(s)	1107, 1340
AccII	CGCG	2 cut(s)	588, 705
AciI	CCGC	1 cut(s)	586
AclWI	GGATC	7 cut(s)	53, 94, 99, 190, 630, 1145, 1150
AcsI	RAATTY	1 cut(s)	831
AcuI	CTGAAG	1 cut(s)	719
AfaI	GTAC	4 cut(s)	201, 547, 595, 702
AfeI	AGCGCT	1 cut(s)	109
AfiI	CCNNNNNNNGG	3 cut(s)	619, 824, 980
AgsI	TTSAA	7 cut(s)	170, 299, 803, 844, 956, 1244, 1300
AjnI	CCWGG	1 cut(s)	1281
AluBI	AGCT	9 cut(s)	18, 38, 239, 254, 285, 697, 995, 1296, 1373
AluI	AGCT	9 cut(s)	18, 38, 239, 254, 285, 697, 995, 1296, 1373
Alw21I	GWGCWC	2 cut(s)	775, 1269
Alw26I	GTCTC	3 cut(s)	465, 1091, 1187
Alw44I	GTGCAC	1 cut(s)	771
AlwI	GGATC	7 cut(s)	53, 94, 99, 190, 630, 1145, 1150
Aor51HI	AGCGCT	1 cut(s)	109
AoxI	GGCC	2 cut(s)	610, 815
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	2 cut(s)	251, 517
ApoI	RAATTY	1 cut(s)	831
ArsI	GACNNNNNNTTYG	4 cut(s)	7, 39, 1022, 1054
Asp700I	GAANNNNTTC	2 cut(s)	201, 835
AspLEI	GCGC	3 cut(s)	110, 117, 590
AspS9I	GGNCC	1 cut(s)	611
AsuHPI	GGTGA	3 cut(s)	392, 492, 1038
AxyI	CCTNAGG	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	775
BbsI	GAAGAC	1 cut(s)	1035
Bbv12I	GWGCWC	2 cut(s)	775, 1269
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	263, 529
BccI	CCATC	3 cut(s)	63, 826, 1046
BciT130I	CCWGG	1 cut(s)	1283
BciVI	GTATCC	1 cut(s)	981
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	3 cut(s)	465, 1091, 1187
BfaI	CTAG	5 cut(s)	543, 813, 854, 870, 1365
BfmI	CTRYAG	2 cut(s)	438, 1291
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	981
BglII	AGATCT	1 cut(s)	949
BisI	GCNGC	2 cut(s)	252, 518
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	2 cut(s)	253, 519
BmcAI	AGTACT	2 cut(s)	201, 547
Bme1390I	CCNGG	1 cut(s)	1283
BmgT120I	GGNCC	1 cut(s)	611
BmiI	GGNNCC	2 cut(s)	429, 1167
BmrFI	CCNGG	1 cut(s)	1283
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	1035
BplI	GAGNNNNNCTC	2 cut(s)	1256, 1288
BpmI	CTGGAG	3 cut(s)	80, 446, 630
Bpu10I	CCTNAGC	1 cut(s)	104
Bpu1102I	GCTNAGC	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	929
BsaI	GGTCTC	1 cut(s)	1187
BsaJI	CCNNGG	1 cut(s)	965
Bsc4I	CCNNNNNNNGG	3 cut(s)	619, 824, 980
Bse1I	ACTGG	2 cut(s)	181, 647
Bse21I	CCTNAGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	1283
BseDI	CCNNGG	1 cut(s)	965
BseLI	CCNNNNNNNGG	3 cut(s)	619, 824, 980
BseMII	CTCAG	5 cut(s)	101, 102, 118, 476, 1086
BseNI	ACTGG	2 cut(s)	181, 647
BseRI	GAGGAG	2 cut(s)	67, 707
BseSI	GKGCMC	1 cut(s)	775
BseXI	GCAGC	2 cut(s)	263, 529
Bsh1236I	CGCG	2 cut(s)	588, 705
BshFI	GGCC	2 cut(s)	612, 817
BsiHKAI	GWGCWC	2 cut(s)	775, 1269
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	3 cut(s)	619, 824, 980
BsmAI	GTCTC	3 cut(s)	465, 1091, 1187
BsmBI	CGTCTC	1 cut(s)	1091
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	612, 817
Bso31I	GGTCTC	1 cut(s)	1187
Bsp1286I	GDGCHC	2 cut(s)	775, 1269
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	1 cut(s)	586
BspANI	GGCC	2 cut(s)	612, 817
BspCNI	CTCAG	5 cut(s)	100, 103, 117, 475, 1087
BspFNI	CGCG	2 cut(s)	588, 705
BspLI	GGNNCC	2 cut(s)	429, 1167
BspMAI	CTGCAG	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	7 cut(s)	53, 94, 99, 190, 630, 1145, 1150
BspTNI	GGTCTC	1 cut(s)	1187
BsrI	ACTGG	2 cut(s)	181, 647
BssECI	CCNNGG	1 cut(s)	965
BssT1I	CCWWGG	1 cut(s)	965
Bst2UI	CCWGG	1 cut(s)	1283
Bst4CI	ACNGT	3 cut(s)	262, 1102, 1231
Bst6I	CTCTTC	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	929
BstC8I	GCNNGC	3 cut(s)	69, 1058, 1317
BstDEI	CTNAG	6 cut(s)	87, 104, 111, 462, 549, 1095
BstFNI	CGCG	2 cut(s)	588, 705
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	3 cut(s)	110, 117, 590
BstMAI	GTCTC	3 cut(s)	465, 1091, 1187
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 1370
BstNI	CCWGG	1 cut(s)	1283
BstNSI	RCATGY	1 cut(s)	767
BstSCI	CCNGG	1 cut(s)	1281
BstSFI	CTRYAG	2 cut(s)	438, 1291
BstSLI	GKGCMC	1 cut(s)	775
BstSNI	TACGTA	1 cut(s)	929
BstUI	CGCG	2 cut(s)	588, 705
BstV1I	GCAGC	2 cut(s)	263, 529
BstV2I	GAAGAC	1 cut(s)	1035
BstX2I	RGATCY	6 cut(s)	45, 91, 99, 182, 949, 1150
BstYI	RGATCY	6 cut(s)	45, 91, 99, 182, 949, 1150
Bsu36I	CCTNAGG	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	981
BsuRI	GGCC	2 cut(s)	612, 817
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	4 cut(s)	62, 258, 309, 1236
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	3 cut(s)	69, 1058, 1317
CfoI	GCGC	3 cut(s)	110, 117, 590
Cfr13I	GGNCC	1 cut(s)	611
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	4 cut(s)	200, 546, 594, 701
CviAII	CATG	2 cut(s)	764, 1360
CviQI	GTAC	4 cut(s)	200, 546, 594, 701
DdeI	CTNAG	6 cut(s)	87, 104, 111, 462, 549, 1095
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco105I	TACGTA	1 cut(s)	929
Eco130I	CCWWGG	1 cut(s)	965
Eco31I	GGTCTC	1 cut(s)	1187
Eco47III	AGCGCT	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	719
Eco81I	CCTNAGG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	1281
EcoT14I	CCWWGG	1 cut(s)	965
ErhI	CCWWGG	1 cut(s)	965
Esp3I	CGTCTC	1 cut(s)	1091
FaeI	CATG	2 cut(s)	767, 1363
FalI	AAGNNNNNCTT	8 cut(s)	137, 169, 189, 221, 958, 990, 1020, 1052
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	2 cut(s)	763, 1359
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	2 cut(s)	1107, 1340
Fnu4HI	GCNGC	2 cut(s)	252, 518
Fsp4HI	GCNGC	2 cut(s)	252, 518
FspBI	CTAG	5 cut(s)	543, 813, 854, 870, 1365
GlaI	GCGC	3 cut(s)	109, 116, 589
GluI	GCNGC	2 cut(s)	252, 518
GsuI	CTGGAG	3 cut(s)	80, 446, 630
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	612, 817
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	3 cut(s)	110, 117, 590
Hin1II	CATG	2 cut(s)	767, 1363
Hin6I	GCGC	3 cut(s)	108, 115, 588
HinP1I	GCGC	3 cut(s)	108, 115, 588
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	6 cut(s)	304, 458, 557, 575, 873, 1043
HphI	GGTGA	3 cut(s)	392, 492, 1038
Hpy166II	GTNNAC	5 cut(s)	579, 773, 1108, 1288, 1341
Hpy188I	TCNGA	4 cut(s)	196, 336, 738, 949
Hpy8I	GTNNAC	5 cut(s)	579, 773, 1108, 1288, 1341
HpyAV	CCTTC	2 cut(s)	1164, 1218
HpyCH4III	ACNGT	3 cut(s)	262, 1102, 1231
HpyCH4IV	ACGT	3 cut(s)	158, 928, 1254
HpyCH4V	TGCA	8 cut(s)	326, 377, 389, 440, 488, 632, 773, 1401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 1370
HpyF3I	CTNAG	6 cut(s)	87, 104, 111, 462, 549, 1095
HpySE526I	ACGT	3 cut(s)	158, 928, 1254
Hsp92II	CATG	2 cut(s)	767, 1363
HspAI	GCGC	3 cut(s)	108, 115, 588
Ksp22I	TGATCA	1 cut(s)	229
LmnI	GCTCC	2 cut(s)	427, 694
Lsp1109I	GCAGC	2 cut(s)	263, 529
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	5 cut(s)	543, 813, 854, 870, 1365
MaeII	ACGT	3 cut(s)	158, 928, 1254
MaeIII	GTNAC	3 cut(s)	498, 759, 1044
MboII	GAAGA	7 cut(s)	72, 725, 813, 828, 842, 1040, 1342
MflI	RGATCY	6 cut(s)	45, 91, 99, 182, 949, 1150
MhlI	GDGCHC	2 cut(s)	775, 1269
MluCI	AATT	6 cut(s)	120, 651, 831, 900, 957, 1305
MlyI	GAGTC	4 cut(s)	467, 584, 882, 1052
MmeI	TCCRAC	2 cut(s)	244, 968
MroXI	GAANNNNTTC	2 cut(s)	201, 835
MseI	TTAA	6 cut(s)	144, 161, 371, 513, 1115, 1179
MslI	CAYNNNNRTG	2 cut(s)	768, 783
MspR9I	CCNGG	1 cut(s)	1283
MvaI	CCWGG	1 cut(s)	1283
MvnI	CGCG	2 cut(s)	588, 705
MwoI	GCNNNNNNNGC	2 cut(s)	114, 1370
NlaIII	CATG	2 cut(s)	767, 1363
NlaIV	GGNNCC	2 cut(s)	429, 1167
NmuCI	GTSAC	3 cut(s)	498, 759, 1044
NspI	RCATGY	1 cut(s)	767
PaqCI	CACCTGC	1 cut(s)	368
PdmI	GAANNNNTTC	2 cut(s)	201, 835
PfeI	GAWTC	2 cut(s)	304, 557
PflMI	CCANNNNNTGG	1 cut(s)	824
PkrI	GCNGC	2 cut(s)	253, 519
PleI	GAGTC	4 cut(s)	466, 583, 881, 1051
PpsI	GAGTC	4 cut(s)	466, 583, 881, 1051
Ppu21I	YACGTR	1 cut(s)	929
PsiI	TTATAA	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	1281
PspGI	CCWGG	1 cut(s)	1281
PspN4I	GGNNCC	2 cut(s)	429, 1167
PspPI	GGNCC	1 cut(s)	611
PsrI	GAACNNNNNNTAC	2 cut(s)	529, 561
PstI	CTGCAG	1 cut(s)	442
PsuI	RGATCY	6 cut(s)	45, 91, 99, 182, 949, 1150
RsaI	GTAC	4 cut(s)	201, 547, 595, 702
RsaNI	GTAC	4 cut(s)	200, 546, 594, 701
RseI	CAYNNNNRTG	2 cut(s)	768, 783
SaqAI	TTAA	6 cut(s)	144, 161, 371, 513, 1115, 1179
SatI	GCNGC	2 cut(s)	252, 518
Sau96I	GGNCC	1 cut(s)	611
ScaI	AGTACT	2 cut(s)	201, 547
SchI	GAGTC	4 cut(s)	467, 584, 882, 1052
ScrFI	CCNGG	1 cut(s)	1283
SduI	GDGCHC	2 cut(s)	775, 1269
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	2 cut(s)	438, 1291
SmiMI	CAYNNNNRTG	2 cut(s)	768, 783
SnaBI	TACGTA	1 cut(s)	929
Sse9I	AATT	6 cut(s)	120, 651, 831, 900, 957, 1305
SsiI	CCGC	1 cut(s)	586
SspI	AATATT	3 cut(s)	344, 495, 1202
SspMI	CTAG	5 cut(s)	543, 813, 854, 870, 1365
StyD4I	CCNGG	1 cut(s)	1281
StyI	CCWWGG	1 cut(s)	965
TaaI	ACNGT	3 cut(s)	262, 1102, 1231
TaiI	ACGT	3 cut(s)	161, 931, 1257
TaqI	TCGA	3 cut(s)	25, 794, 1394
TasI	AATT	6 cut(s)	120, 651, 831, 900, 957, 1305
TatI	WGTACW	2 cut(s)	199, 545
TfiI	GAWTC	2 cut(s)	304, 557
Tru1I	TTAA	6 cut(s)	144, 161, 371, 513, 1115, 1179
Tru9I	TTAA	6 cut(s)	144, 161, 371, 513, 1115, 1179
TscAI	CASTG	4 cut(s)	69, 265, 316, 1236
TseFI	GTSAC	3 cut(s)	498, 759, 1044
TseI	GCWGC	2 cut(s)	251, 517
Tsp45I	GTSAC	3 cut(s)	498, 759, 1044
TspDTI	ATGAA	5 cut(s)	647, 828, 912, 1194, 1348
TspRI	CASTG	4 cut(s)	69, 265, 316, 1236
Van91I	CCANNNNNTGG	1 cut(s)	824
VneI	GTGCAC	1 cut(s)	771
XapI	RAATTY	1 cut(s)	831
XceI	RCATGY	1 cut(s)	767
XmiI	GTMKAC	2 cut(s)	1107, 1340
XmnI	GAANNNNTTC	2 cut(s)	201, 835
XspI	CTAG	5 cut(s)	543, 813, 854, 870, 1365
ZrmI	AGTACT	2 cut(s)	201, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.