FvH4_7g19370

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
15993168 .. 15999394
6227 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19370.t6

Sequence Viewer

Length: 1848 bp
ATGGAAGGGAAGATTGTCGAAAATGTTACTGTGTCACAATGCTACCAACTAAGTAGGAAGTTCGACAACCGATATCAAAGGGACTATTGTGCCCCTTTTATGCGCAAAGTGCTTCCCTTACAGCAAGGGAGGTTAGCATGGACTGCCATTCCTTCCATGCAATTGCGCAACTTATCAAAATTCCAGAGCAGTTTTGTAAAGCGAGGAACTGTTCATTGCAATGCTGCTGCATCTACAACTGCAGTACCATATCTCGAAAAAGTTGATTTTTTGAAGCTTCAAAATGGCAGTGATATTCGAGGTGTTGCTGTTGCTGGGGTTGAAGGAGAACCGCTTAATCTGACTGAACCTGTGGCAGAAGCAATAGCAGCTGGTTTTGCAGCATGGTTAGTGGAAAAGAAGAAGGACGACTCTAAATGTTTGAGAGTTTCTATTGGCCATGATTCTCGAATATCTGCACAAAAGTTAGAGGATGCAATTTCGCGAGGAATCGCTGGTGCTGGTCTGGGTGTTGTTCAATACGGATTGGCATCCACACCAGCCATGTTTAATAGCACAATTACCAAAGATGATGGTTTCTTATGTCCTGCAGATGGGGCCATAATGATAACAGCTAGTCATTTGCCTTACAACAGGAATGGATTCAAATTCTTCACAAATGCTGGAGGGCTTGGGAAAGCTGACATTAAAAACATATTAGAGCGTGCTGCAGATATTTACACTAAGTTTACAGTGGAGGGTTTGACAAGTTCAAAAGAAAAGGCACTTGCTTCTGTGAAGAGAGTCAATTACATGGACATATATACATCTGATCTTGTAAAGGCAGTTCGCAAAGCTGCAGGAAATATAGAGAAGCCACTGGAAGGATTCCATATTGTTGTTGATGCAGGGAATGGAGCAGGAGGATTTTTTGCTGCAAAAGTGCTCGAACCTCTTGGGGCAGTCACTTCTGGTAGTCAGTTCTTGGAGCCAGATGGTATGTTTCCAAACCATGTTCCAAACCCAGAGGACAAAGCAGCCATGAAAGCTATCACTCAGGCAGTCCTTGATAACAAAGCTGATTTGGGGATCATCTTTGATACAGACGTTGATAGATCTGCTGCTGTGGACTCTACCGGCAGCGAGTTCAATCGGAATCGGCTGATTGCCTTGATGTCTGCCATTGTTCTTGAGGAACATCCAAGAACAACTATTGTCACAGACAGTGTCACTTCAGATGGTCTCACCACATTCATCGAGCAGAAACTTGGGGGGAAGCACCACCGTTTCAAAAGAGGCTATAAAAATGTCATTGATGAAGCTATTCGTTTGAACTCTGTGGGTGAGGAATCACATCTGGCTATTGAAACTAGTGGCCATGGAGCTCTGAAGGAAAACCATTGGCTTGATGATGGTGCATACCTCATGGTCAAAATTTTAAATAAACTTGCCTCAGCTAGAGCTTCAGGACATGGTGGTGGCAGCAAAGTTTTGACTGATCTCTTAGAAGGTTTGGAGGAACCAGGTTATTCAGTGGAACTGAGATTAAAGATCAATCAAAGTCATCAAGATCTTCAAGGAGGATCTTTCCGAGACTATGGAGAAGCAGTGTTGAAACATTTGGAAAACTATATTGAATTGCATCCAAAGCTTAGAAAAGCCCCTGTAAACTATGAAGGGGTCCGAGTTTCTGGGAATGGTGGGTGGTTTCTTCTTAGACTCTCGCTTCATGATCCTGTACTTCCCCTTAACATAGAGGCACCAAGCAAGGATGATGCTGTATTACTTGGAAATGTTGCGCGTGCTGCTTTGACGGAGTTCTCTGCTTTGGATACATCTGCTTTAGACAAGTTTGTCCAAGCATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

616

Amino Acids

66.63

Weight (kDa)

6.62

Isoelectric Point (pI)

30.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGM_PMM_I PF02878 23 - 165 1.9e-24 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
PGM_PMM_II PF02879 196 - 301 2.8e-21 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1832
Acc16I TGCGCA 2 cut(s) 104, 167
AccB1I GGYRCC 1 cut(s) 1738
AccII CGCG 2 cut(s) 484, 1780
AciI CCGC 1 cut(s) 332
AclWI GGATC 3 cut(s) 1076, 1570, 1706
AcoI YGGCCR 2 cut(s) 436, 1354
AcsI RAATTY 3 cut(s) 179, 647, 1413
AcuI CTGAAG 3 cut(s) 1197, 1388, 1428
AfaI GTAC 2 cut(s) 246, 1719
AfiI CCNNNNNNNGG 2 cut(s) 593, 863
AhlI ACTAGT 1 cut(s) 1349
AjnI CCWGG 1 cut(s) 1501
Alw21I GWGCWC 2 cut(s) 927, 1366
Alw26I GTCTC 2 cut(s) 1226, 1566
AlwI GGATC 3 cut(s) 1076, 1570, 1706
AoxI GGCC 3 cut(s) 436, 597, 1354
ApoI RAATTY 3 cut(s) 179, 647, 1413
Asp700I GAANNNNTTC 2 cut(s) 641, 1302
AspLEI GCGC 3 cut(s) 105, 168, 1780
AspS9I GGNCC 2 cut(s) 597, 1660
AsuHPI GGTGA 2 cut(s) 1216, 1334
AvaII GGWCC 1 cut(s) 1660
BaeGI GKGCMC 1 cut(s) 94
BaeI ACNNNNGTAYC 4 cut(s) 228, 261, 1071, 1104
BalI TGGCCA 2 cut(s) 438, 1356
BanI GGYRCC 1 cut(s) 1738
BanII GRGCYC 1 cut(s) 1366
Bbv12I GWGCWC 2 cut(s) 927, 1366
BbvCI CCTCAGC 1 cut(s) 1432
BccI CCATC 5 cut(s) 566, 587, 968, 1211, 1385
BciT130I CCWGG 1 cut(s) 1503
BciVI GTATCC 1 cut(s) 1804
BcoDI GTCTC 2 cut(s) 1226, 1566
BcuI ACTAGT 1 cut(s) 1349
BfaI CTAG 4 cut(s) 615, 1350, 1437, 1846
BfmI CTRYAG 4 cut(s) 240, 588, 708, 837
BfuI GTATCC 1 cut(s) 1804
BglII AGATCT 2 cut(s) 1094, 1549
Bme1390I CCNGG 1 cut(s) 1503
Bme18I GGWCC 1 cut(s) 1660
BmgT120I GGNCC 2 cut(s) 597, 1660
BmiI GGNNCC 5 cut(s) 598, 969, 1500, 1661, 1740
BmrFI CCNGG 1 cut(s) 1503
BmsI GCATC 6 cut(s) 239, 463, 539, 874, 1630, 1744
BpmI CTGGAG 1 cut(s) 684
Bpu10I CCTNAGC 1 cut(s) 1432
BpuEI CTTGAG 1 cut(s) 1190
BsaBI GATNNNNATC 1 cut(s) 529
BsaI GGTCTC 1 cut(s) 1226
BsaJI CCNNGG 1 cut(s) 1357
BsaXI ACNNNNNCTCC 2 cut(s) 1572, 1602
Bsc4I CCNNNNNNNGG 2 cut(s) 593, 863
Bse118I RCCGGY 1 cut(s) 1115
Bse1I ACTGG 1 cut(s) 864
Bse3DI GCAATG 2 cut(s) 214, 226
Bse8I GATNNNNATC 1 cut(s) 529
BseBI CCWGG 1 cut(s) 1503
BseDI CCNNGG 1 cut(s) 1357
BseGI GGATG 6 cut(s) 478, 530, 1177, 1621, 1756, 1841
BseJI GATNNNNATC 1 cut(s) 529
BseLI CCNNNNNNNGG 2 cut(s) 593, 863
BseMI GCAATG 2 cut(s) 214, 226
BseMII CTCAG 3 cut(s) 1049, 1446, 1511
BseNI ACTGG 1 cut(s) 864
BseSI GKGCMC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 314
BsgI GTGCAG 1 cut(s) 441
Bsh1236I CGCG 2 cut(s) 484, 1780
BshFI GGCC 3 cut(s) 438, 599, 1356
BshNI GGYRCC 1 cut(s) 1738
BsiHKAI GWGCWC 2 cut(s) 927, 1366
BsiSI CCGG 1 cut(s) 1116
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 593, 863
BsmAI GTCTC 2 cut(s) 1226, 1566
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 3 cut(s) 438, 599, 1356
Bso31I GGTCTC 1 cut(s) 1226
Bsp1286I GDGCHC 3 cut(s) 94, 927, 1366
Bsp143I GATC 8 cut(s) 811, 1068, 1094, 1477, 1530, 1549, 1562, 1711
Bsp19I CCATGG 1 cut(s) 1357
Bsp68I TCGCGA 1 cut(s) 484
BspACI CCGC 1 cut(s) 332
BspANI GGCC 3 cut(s) 438, 599, 1356
BspCNI CTCAG 3 cut(s) 1048, 1445, 1512
BspFNI CGCG 2 cut(s) 484, 1780
BspHI TCATGA 1 cut(s) 1708
BspLI GGNNCC 5 cut(s) 598, 969, 1500, 1661, 1740
BspMAI CTGCAG 4 cut(s) 244, 592, 712, 841
BspPI GGATC 3 cut(s) 1076, 1570, 1706
BspT107I GGYRCC 1 cut(s) 1738
BspTNI GGTCTC 1 cut(s) 1226
BsrDI GCAATG 2 cut(s) 214, 226
BsrFI RCCGGY 1 cut(s) 1115
BsrI ACTGG 1 cut(s) 864
BssAI RCCGGY 1 cut(s) 1115
BssECI CCNNGG 1 cut(s) 1357
BssMI GATC 8 cut(s) 811, 1068, 1094, 1477, 1530, 1549, 1562, 1711
BssT1I CCWWGG 1 cut(s) 1357
Bst2UI CCWGG 1 cut(s) 1503
Bst4CI ACNGT 5 cut(s) 31, 211, 733, 1205, 1265
Bst6I CTCTTC 1 cut(s) 773
BstAPI GCANNNNNTGC 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 705, 1782
BstDEI CTNAG 8 cut(s) 50, 723, 1035, 1432, 1483, 1520, 1631, 1694
BstDSI CCRYGG 1 cut(s) 1357
BstF5I GGATG 6 cut(s) 478, 530, 1177, 1621, 1756, 1841
BstFNI CGCG 2 cut(s) 484, 1780
BstHHI GCGC 3 cut(s) 105, 168, 1780
BstKTI GATC 8 cut(s) 814, 1071, 1097, 1480, 1533, 1552, 1565, 1714
BstMAI GTCTC 2 cut(s) 1226, 1566
BstMBI GATC 8 cut(s) 811, 1068, 1094, 1477, 1530, 1549, 1562, 1711
BstMWI GCNNNNNNNGC 8 cut(s) 109, 143, 368, 377, 596, 1025, 1627, 1784
BstNI CCWGG 1 cut(s) 1503
BstSCI CCNGG 1 cut(s) 1501
BstSFI CTRYAG 4 cut(s) 240, 588, 708, 837
BstSLI GKGCMC 1 cut(s) 94
BstUI CGCG 2 cut(s) 484, 1780
BstX2I RGATCY 3 cut(s) 1094, 1549, 1562
BstYI RGATCY 3 cut(s) 1094, 1549, 1562
BsuI GTATCC 1 cut(s) 1804
BsuRI GGCC 3 cut(s) 438, 599, 1356
BtgI CCRYGG 1 cut(s) 1357
BtsCI GGATG 6 cut(s) 478, 530, 1177, 1621, 1756, 1841
BtsI GCAGTG 2 cut(s) 295, 1593
BtsIMutI CAGTG 6 cut(s) 295, 738, 857, 1210, 1518, 1593
BtuMI TCGCGA 1 cut(s) 484
Cac8I GCNNGC 2 cut(s) 705, 1782
CciI TCATGA 1 cut(s) 1708
CfoI GCGC 3 cut(s) 105, 168, 1780
Cfr10I RCCGGY 1 cut(s) 1115
Cfr13I GGNCC 2 cut(s) 597, 1660
CsiI ACCWGGT 1 cut(s) 1501
Csp6I GTAC 2 cut(s) 245, 1718
CviQI GTAC 2 cut(s) 245, 1718
DdeI CTNAG 8 cut(s) 50, 723, 1035, 1432, 1483, 1520, 1631, 1694
DpnI GATC 8 cut(s) 813, 1070, 1096, 1479, 1532, 1551, 1564, 1713
DpnII GATC 8 cut(s) 811, 1068, 1094, 1477, 1530, 1549, 1562, 1711
DraI TTTAAA 1 cut(s) 1419
DrdI GACNNNNNNGTC 1 cut(s) 1832
DseDI GACNNNNNNGTC 1 cut(s) 1832
EaeI YGGCCR 2 cut(s) 436, 1354
Eam1104I CTCTTC 1 cut(s) 773
EarI CTCTTC 1 cut(s) 773
Ecl136II GAGCTC 1 cut(s) 1364
Eco130I CCWWGG 1 cut(s) 1357
Eco24I GRGCYC 1 cut(s) 1366
Eco31I GGTCTC 1 cut(s) 1226
Eco32I GATATC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 1660
Eco53kI GAGCTC 1 cut(s) 1364
Eco57I CTGAAG 3 cut(s) 1197, 1388, 1428
EcoICRI GAGCTC 1 cut(s) 1364
EcoRII CCWGG 1 cut(s) 1501
EcoRV GATATC 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 1357
EcoT38I GRGCYC 1 cut(s) 1366
ErhI CCWWGG 1 cut(s) 1357
FaqI GGGAC 1 cut(s) 95
FokI GGATG 6 cut(s) 485, 517, 1164, 1608, 1763, 1828
FriOI GRGCYC 1 cut(s) 1366
FspBI CTAG 4 cut(s) 615, 1350, 1437, 1846
FspI TGCGCA 2 cut(s) 104, 167
GlaI GCGC 3 cut(s) 104, 167, 1779
GsaI CCCAGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 684
HaeIII GGCC 3 cut(s) 438, 599, 1356
HapII CCGG 1 cut(s) 1116
HhaI GCGC 3 cut(s) 105, 168, 1780
Hin6I GCGC 3 cut(s) 103, 166, 1778
HinP1I GCGC 3 cut(s) 103, 166, 1778
HindIII AAGCTT 2 cut(s) 275, 1628
HpaII CCGG 1 cut(s) 1116
HphI GGTGA 2 cut(s) 1216, 1334
Hpy166II GTNNAC 3 cut(s) 729, 1108, 1648
Hpy188I TCNGA 7 cut(s) 342, 811, 1134, 1216, 1368, 1571, 1664
Hpy188III TCNNGA 8 cut(s) 184, 254, 447, 483, 1169, 1446, 1547, 1709
Hpy8I GTNNAC 3 cut(s) 729, 1108, 1648
HpyAV CCTTC 7 cut(s) 162, 317, 397, 857, 1363, 1481, 1649
HpyCH4III ACNGT 5 cut(s) 31, 211, 733, 1205, 1265
HpyCH4IV ACGT 1 cut(s) 1086
HpyF10VI GCNNNNNNNGC 8 cut(s) 109, 143, 368, 377, 596, 1025, 1627, 1784
HpyF3I CTNAG 8 cut(s) 50, 723, 1035, 1432, 1483, 1520, 1631, 1694
HpySE526I ACGT 1 cut(s) 1086
HspAI GCGC 3 cut(s) 103, 166, 1778
Kzo9I GATC 8 cut(s) 811, 1068, 1094, 1477, 1530, 1549, 1562, 1711
LmnI GCTCC 3 cut(s) 896, 967, 1361
LweI GCATC 6 cut(s) 239, 463, 539, 874, 1630, 1744
MabI ACCWGGT 1 cut(s) 1501
MaeI CTAG 4 cut(s) 615, 1350, 1437, 1846
MaeII ACGT 1 cut(s) 1086
MaeIII GTNAC 5 cut(s) 25, 33, 943, 1195, 1207
MalI GATC 8 cut(s) 813, 1070, 1096, 1479, 1532, 1551, 1564, 1713
MboI GATC 8 cut(s) 811, 1068, 1094, 1477, 1530, 1549, 1562, 1711
MboII GAAGA 6 cut(s) 22, 412, 643, 790, 1544, 1682
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 3 cut(s) 1094, 1549, 1562
MhlI GDGCHC 3 cut(s) 94, 927, 1366
MlsI TGGCCA 2 cut(s) 438, 1356
MluCI AATT 8 cut(s) 161, 179, 477, 558, 647, 787, 1413, 1616
MluNI TGGCCA 2 cut(s) 438, 1356
MlyI GAGTC 4 cut(s) 404, 792, 1103, 1692
Mox20I TGGCCA 2 cut(s) 438, 1356
MroXI GAANNNNTTC 2 cut(s) 641, 1302
MscI TGGCCA 2 cut(s) 438, 1356
MseI TTAA 6 cut(s) 336, 549, 687, 1418, 1526, 1728
MslI CAYNNNNRTG 2 cut(s) 219, 1455
Msp20I TGGCCA 2 cut(s) 438, 1356
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 1 cut(s) 1116
MspR9I CCNGG 1 cut(s) 1503
MunI CAATTG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 1503
MvnI CGCG 2 cut(s) 484, 1780
MwoI GCNNNNNNNGC 8 cut(s) 109, 143, 368, 377, 596, 1025, 1627, 1784
NcoI CCATGG 1 cut(s) 1357
NdeII GATC 8 cut(s) 811, 1068, 1094, 1477, 1530, 1549, 1562, 1711
NlaIV GGNNCC 5 cut(s) 598, 969, 1500, 1661, 1740
NmuCI GTSAC 4 cut(s) 33, 943, 1195, 1207
NruI TCGCGA 1 cut(s) 484
NsbI TGCGCA 2 cut(s) 104, 167
PagI TCATGA 1 cut(s) 1708
PdmI GAANNNNTTC 2 cut(s) 641, 1302
PfeI GAWTC 6 cut(s) 443, 489, 642, 867, 1135, 1328
PflFI GACNNNGTC 1 cut(s) 1205
PleI GAGTC 4 cut(s) 404, 791, 1103, 1692
PpsI GAGTC 4 cut(s) 404, 791, 1103, 1692
Psp124BI GAGCTC 1 cut(s) 1366
Psp6I CCWGG 1 cut(s) 1501
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 1 cut(s) 1501
PspN4I GGNNCC 5 cut(s) 598, 969, 1500, 1661, 1740
PspPI GGNCC 2 cut(s) 597, 1660
PsrI GAACNNNNNNTAC 2 cut(s) 810, 842
PstI CTGCAG 4 cut(s) 244, 592, 712, 841
PsuI RGATCY 3 cut(s) 1094, 1549, 1562
PsyI GACNNNGTC 1 cut(s) 1205
PvuII CAGCTG 1 cut(s) 371
RruI TCGCGA 1 cut(s) 484
RsaI GTAC 2 cut(s) 246, 1719
RsaNI GTAC 2 cut(s) 245, 1718
RseI CAYNNNNRTG 2 cut(s) 219, 1455
SacI GAGCTC 1 cut(s) 1366
SaqAI TTAA 6 cut(s) 336, 549, 687, 1418, 1526, 1728
Sau3AI GATC 8 cut(s) 811, 1068, 1094, 1477, 1530, 1549, 1562, 1711
Sau96I GGNCC 2 cut(s) 597, 1660
SchI GAGTC 4 cut(s) 404, 792, 1103, 1692
ScrFI CCNGG 1 cut(s) 1503
SduI GDGCHC 3 cut(s) 94, 927, 1366
SexAI ACCWGGT 1 cut(s) 1501
SfaNI GCATC 6 cut(s) 239, 463, 539, 874, 1630, 1744
SfcI CTRYAG 4 cut(s) 240, 588, 708, 837
SinI GGWCC 1 cut(s) 1660
SmiMI CAYNNNNRTG 2 cut(s) 219, 1455
SmlI CTYRAG 1 cut(s) 1169
SmoI CTYRAG 1 cut(s) 1169
SpeI ACTAGT 1 cut(s) 1349
Sse9I AATT 8 cut(s) 161, 179, 477, 558, 647, 787, 1413, 1616
SsiI CCGC 1 cut(s) 332
SspMI CTAG 4 cut(s) 615, 1350, 1437, 1846
SstI GAGCTC 1 cut(s) 1366
StyD4I CCNGG 1 cut(s) 1501
StyI CCWWGG 1 cut(s) 1357
TaaI ACNGT 5 cut(s) 31, 211, 733, 1205, 1265
TaiI ACGT 1 cut(s) 1089
TaqI TCGA 7 cut(s) 18, 63, 255, 298, 448, 927, 1236
TasI AATT 8 cut(s) 161, 179, 477, 558, 647, 787, 1413, 1616
TatI WGTACW 1 cut(s) 1717
TfiI GAWTC 6 cut(s) 443, 489, 642, 867, 1135, 1328
Tru1I TTAA 6 cut(s) 336, 549, 687, 1418, 1526, 1728
Tru9I TTAA 6 cut(s) 336, 549, 687, 1418, 1526, 1728
TscAI CASTG 6 cut(s) 295, 738, 864, 1210, 1518, 1593
TseFI GTSAC 4 cut(s) 33, 943, 1195, 1207
Tsp45I GTSAC 4 cut(s) 33, 943, 1195, 1207
TspDTI ATGAA 6 cut(s) 203, 1037, 1222, 1311, 1668, 1697
TspGWI ACGGA 2 cut(s) 537, 1808
TspRI CASTG 6 cut(s) 295, 738, 864, 1210, 1518, 1593
Tth111I GACNNNGTC 1 cut(s) 1205
VpaK11BI GGWCC 1 cut(s) 1660
XapI RAATTY 3 cut(s) 179, 647, 1413
XmnI GAANNNNTTC 2 cut(s) 641, 1302
XspI CTAG 4 cut(s) 615, 1350, 1437, 1846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.