Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004027.1

Orthogroup ID

OG0004407

Physical Location & Seq

Genomic Coordinates Reverse (-)

18196 .. 24035

Gene Structure 5840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004027.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

atggaagctgctgcatctaccactgcagttccatatcttgaaaaagttgattttctgaagcttcaaaatggcagtgatattcgaggtgttgctgttgctggggttgaaggagagccaatcaatttgactgaacctgtggcagaagcaatagcagctggttttgctgcatggttggcggaaaagaagaaggccgactctaaacgtttgagagtttctgttggccatgattctcgaatatctgcacaacagttagaggatgcaatttcacggggaattgctggtgctggtctggatgttgttcaatacggattggcatccacaccagcaatgtttaatagcacagttaccgaagatgatggtttcttatgtcctgccgatggggccataatgataacagcaagtcatttgccttacaacaggaatggattcaaattcttcacaaatgctggagggcttgggaaagctgacattaaaaacatcttagagcgtgctgcagatatatacaataagtttacagtggaaggtttgacaagttcaaaagaaaaggcacttgcttctgtgaagagagttgattatatgaacgtatatacatctgatcttgtaaaggcagttcgcaaagctgcaggaaatatagagaagccactggaaggattccatattgttgttgatgcagggaatggagcaggaggattttttgctgcaaaagtgcttgaacctcttggggcagtcacttctggtagtcagttcttggagccagatggtatgtttccaaaccatattccaaacccagaggacaaagcagccatgaaagctatcacccaggcagtccttgataacaaggctgatttagggatcatctttgatacagacgttgatagatctgctgctgtggactcttctggcaacgagttcaatcggaatcggctgattgccttgatgtctgccattgttcttgaggaacatcctggaacaactattgtcacagacagtgtcacctcagatggtcttaccacattcatcgagcagaaacttggggggaagcaccaccgtttcaaaagaggttacaaaaatgtcattgatgaagctattcgtttgaactctctgggtgaggaatcacatctggctattgaaactagtggccatggagctctcaaggaaaaccattggcttgatgatggtgcatacctcatggtcaaaattttaaataaacttgcctcagctagagcttcaggacatggtggtggcagcaaagttttgactgatcttttagaaggtttggaggaaccaggtttttcagtcgaactgagattaaagatcaatcaaagtcatcaagatcttaaaggaggatctttccgagactatggagaagcagtgttgaaacatttaggaaactatactgaatcgtatcctaagcttaaaaaagcccctgttaaccatgaaggggtacgagtttctggctatggtgggtggtttcttcttagactctcacttcacgatcctgtacttccccttaacatagaggcaccaagcaagagtgatgctgtatcacttggaaatgttgtgcgtgctgctctgacggagttctctgctttggatacatcttctttagataaatttgtccaagcatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_II PGM_PMM_III

Protein Analysis

543

Amino Acids

58.05

Weight (kDa)

5.73

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17522 AT5G17530 AT5G17530 AT5G17530 AT5G17530 AT5G17530 AT5G17530 AT5G17530
fragaria_vesca	FvH4_7g19370 FvH4_7g19370 FvH4_7g19370 FvH4_7g19370 FvH4_7g19370 FvH4_7g19370
malus_domestica	MD01G1108200.v1.1 MD07G1174200.v1.1
prunus_persica	Prupe.2G213100_v2.0.a1 Prupe.2G213100_v2.0.a1 Prupe.2G213100_v2.0.a1 Prupe.2G213100_v2.0.a1
pyrus_communis	pycom01g13510
rosa_chinensis	RchiOBHm_Chr1g0363251
rosa_laevigata	RLG00000027579
rosa_multiflora	Rmu_sc0004027.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293310
rosa_rugosa	Rorug01G0305700 Rorug01G0305800
rosa_samantha	Rh1AG314700 Rh1BG278200 Rh1CG294600 Rh1DG309000
rosa_wichuraiana	Rw1G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1522
AciI	CCGC	1 cut(s)	176
AclI	AACGTT	1 cut(s)	202
AclWI	GGATC	3 cut(s)	860, 1354, 1490
AcoI	YGGCCR	2 cut(s)	220, 1138
AcsI	RAATTY	3 cut(s)	431, 1197, 1613
AcuI	CTGAAG	2 cut(s)	77, 1212
AfaI	GTAC	2 cut(s)	1446, 1503
AfiI	CCNNNNNNNGG	3 cut(s)	377, 647, 1441
AhlI	ACTAGT	1 cut(s)	1133
AjnI	CCWGG	3 cut(s)	819, 964, 1285
Alw21I	GWGCWC	1 cut(s)	1150
Alw26I	GTCTC	1 cut(s)	1350
AlwI	GGATC	3 cut(s)	860, 1354, 1490
AoxI	GGCC	4 cut(s)	189, 220, 381, 1138
ApoI	RAATTY	3 cut(s)	431, 1197, 1613
Asp700I	GAANNNNTTC	2 cut(s)	425, 1086
AspS9I	GGNCC	1 cut(s)	381
AsuHPI	GGTGA	3 cut(s)	808, 985, 1118
BaeI	ACNNNNGTAYC	2 cut(s)	855, 888
BalI	TGGCCA	2 cut(s)	222, 1140
BanI	GGYRCC	1 cut(s)	1522
BanII	GRGCYC	1 cut(s)	1150
Bbv12I	GWGCWC	1 cut(s)	1150
BbvCI	CCTCAGC	1 cut(s)	1216
BbvI	GCAGC	9 cut(s)	151, 164, 478, 607, 685, 812, 871, 1257, 1555
BccI	CCATC	5 cut(s)	350, 371, 752, 995, 1169
BciT130I	CCWGG	3 cut(s)	821, 966, 1287
BciVI	GTATCC	2 cut(s)	1416, 1588
BcoDI	GTCTC	1 cut(s)	1350
BcuI	ACTAGT	1 cut(s)	1133
BfaI	CTAG	3 cut(s)	1134, 1221, 1630
BfmI	CTRYAG	3 cut(s)	24, 492, 621
BfuI	GTATCC	2 cut(s)	1416, 1588
BglI	GCCNNNNNGGC	1 cut(s)	380
BglII	AGATCT	2 cut(s)	878, 1333
Bme1390I	CCNGG	3 cut(s)	821, 966, 1287
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	4 cut(s)	382, 753, 1284, 1524
BmrFI	CCNGG	3 cut(s)	821, 966, 1287
BmsI	GCATC	5 cut(s)	23, 247, 323, 658, 1528
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	2 cut(s)	1216, 1410
BpuEI	CTTGAG	2 cut(s)	974, 1136
BsaBI	GATNNNNATC	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	819, 1141
BsaXI	ACNNNNNCTCC	2 cut(s)	1356, 1386
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 647, 1441
Bse1I	ACTGG	1 cut(s)	648
Bse3DI	GCAATG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	313
BseBI	CCWGG	3 cut(s)	821, 966, 1287
BseDI	CCNNGG	2 cut(s)	819, 1141
BseGI	GGATG	5 cut(s)	262, 298, 314, 961, 1625
BseJI	GATNNNNATC	1 cut(s)	313
BseLI	CCNNNNNNNGG	3 cut(s)	377, 647, 1441
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	3 cut(s)	1011, 1230, 1295
BseNI	ACTGG	1 cut(s)	648
BseXI	GCAGC	9 cut(s)	151, 164, 478, 607, 685, 812, 871, 1257, 1555
BseYI	CCCAGC	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	4 cut(s)	191, 222, 383, 1140
BshNI	GGYRCC	1 cut(s)	1522
BsiHKAI	GWGCWC	1 cut(s)	1150
BslI	CCNNNNNNNGG	3 cut(s)	377, 647, 1441
BsmAI	GTCTC	1 cut(s)	1350
BsnI	GGCC	4 cut(s)	191, 222, 383, 1140
Bsp1286I	GDGCHC	1 cut(s)	1150
Bsp143I	GATC	8 cut(s)	595, 852, 878, 1261, 1314, 1333, 1346, 1495
Bsp19I	CCATGG	1 cut(s)	1141
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	4 cut(s)	191, 222, 383, 1140
BspCNI	CTCAG	3 cut(s)	1010, 1229, 1296
BspLI	GGNNCC	4 cut(s)	382, 753, 1284, 1524
BspMAI	CTGCAG	3 cut(s)	28, 496, 625
BspPI	GGATC	3 cut(s)	860, 1354, 1490
BspT107I	GGYRCC	1 cut(s)	1522
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	648
BssECI	CCNNGG	2 cut(s)	819, 1141
BssMI	GATC	8 cut(s)	595, 852, 878, 1261, 1314, 1333, 1346, 1495
BssT1I	CCWWGG	1 cut(s)	1141
Bst2UI	CCWGG	3 cut(s)	821, 966, 1287
Bst4CI	ACNGT	5 cut(s)	249, 343, 517, 989, 1049
Bst6I	CTCTTC	2 cut(s)	557, 901
BstC8I	GCNNGC	2 cut(s)	489, 1566
BstDEI	CTNAG	6 cut(s)	481, 997, 1216, 1304, 1410, 1478
BstDSI	CCRYGG	1 cut(s)	1141
BstF5I	GGATG	5 cut(s)	262, 298, 314, 961, 1625
BstKTI	GATC	8 cut(s)	598, 855, 881, 1264, 1317, 1336, 1349, 1498
BstMAI	GTCTC	1 cut(s)	1350
BstMBI	GATC	8 cut(s)	595, 852, 878, 1261, 1314, 1333, 1346, 1495
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 161, 173, 380, 809
BstNI	CCWGG	3 cut(s)	821, 966, 1287
BstSCI	CCNGG	3 cut(s)	819, 964, 1285
BstSFI	CTRYAG	3 cut(s)	24, 492, 621
BstV1I	GCAGC	9 cut(s)	151, 164, 478, 607, 685, 812, 871, 1257, 1555
BstX2I	RGATCY	3 cut(s)	878, 1333, 1346
BstYI	RGATCY	3 cut(s)	878, 1333, 1346
BsuI	GTATCC	2 cut(s)	1416, 1588
BsuRI	GGCC	4 cut(s)	191, 222, 383, 1140
BtgI	CCRYGG	1 cut(s)	1141
BtsCI	GGATG	5 cut(s)	262, 298, 314, 961, 1625
BtsI	GCAGTG	3 cut(s)	21, 79, 1377
BtsIMutI	CAGTG	6 cut(s)	21, 79, 522, 641, 994, 1377
Cac8I	GCNNGC	2 cut(s)	489, 1566
Cfr13I	GGNCC	1 cut(s)	381
CsiI	ACCWGGT	1 cut(s)	1285
Csp6I	GTAC	2 cut(s)	1445, 1502
CviAII	CATG	7 cut(s)	168, 224, 805, 1142, 1189, 1235, 1436
CviQI	GTAC	2 cut(s)	1445, 1502
DdeI	CTNAG	6 cut(s)	481, 997, 1216, 1304, 1410, 1478
DpnI	GATC	8 cut(s)	597, 854, 880, 1263, 1316, 1335, 1348, 1497
DpnII	GATC	8 cut(s)	595, 852, 878, 1261, 1314, 1333, 1346, 1495
DraI	TTTAAA	1 cut(s)	1203
EaeI	YGGCCR	2 cut(s)	220, 1138
Eam1104I	CTCTTC	2 cut(s)	557, 901
EarI	CTCTTC	2 cut(s)	557, 901
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	1148
Eco130I	CCWWGG	1 cut(s)	1141
Eco24I	GRGCYC	1 cut(s)	1150
Eco53kI	GAGCTC	1 cut(s)	1148
Eco57I	CTGAAG	2 cut(s)	77, 1212
EcoICRI	GAGCTC	1 cut(s)	1148
EcoRII	CCWGG	3 cut(s)	819, 964, 1285
EcoT14I	CCWWGG	1 cut(s)	1141
EcoT38I	GRGCYC	1 cut(s)	1150
ErhI	CCWWGG	1 cut(s)	1141
FaeI	CATG	7 cut(s)	171, 227, 808, 1145, 1192, 1238, 1439
FatI	CATG	7 cut(s)	167, 223, 804, 1141, 1188, 1234, 1435
FokI	GGATG	5 cut(s)	269, 301, 305, 948, 1612
FriOI	GRGCYC	1 cut(s)	1150
FspBI	CTAG	3 cut(s)	1134, 1221, 1630
GsaI	CCCAGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	4 cut(s)	191, 222, 383, 1140
Hin1II	CATG	7 cut(s)	171, 227, 808, 1145, 1192, 1238, 1439
HincII	GTYRAC	1 cut(s)	1432
HindII	GTYRAC	1 cut(s)	1432
HindIII	AAGCTT	2 cut(s)	59, 1412
HinfI	GANTC	9 cut(s)	194, 227, 426, 651, 893, 919, 1112, 1400, 1482
HpaI	GTTAAC	1 cut(s)	1432
HphI	GGTGA	3 cut(s)	808, 985, 1118
Hpy166II	GTNNAC	3 cut(s)	513, 892, 1432
Hpy188I	TCNGA	6 cut(s)	57, 595, 918, 1000, 1355, 1575
Hpy188III	TCNNGA	7 cut(s)	38, 231, 290, 953, 1230, 1331, 1493
Hpy8I	GTNNAC	3 cut(s)	513, 892, 1432
HpyAV	CCTTC	6 cut(s)	101, 181, 515, 641, 1265, 1433
HpyCH4III	ACNGT	5 cut(s)	249, 343, 517, 989, 1049
HpyCH4IV	ACGT	3 cut(s)	202, 582, 870
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 161, 173, 380, 809
HpyF3I	CTNAG	6 cut(s)	481, 997, 1216, 1304, 1410, 1478
HpySE526I	ACGT	3 cut(s)	202, 582, 870
Hsp92II	CATG	7 cut(s)	171, 227, 808, 1145, 1192, 1238, 1439
KspAI	GTTAAC	1 cut(s)	1432
Kzo9I	GATC	8 cut(s)	595, 852, 878, 1261, 1314, 1333, 1346, 1495
LmnI	GCTCC	3 cut(s)	680, 751, 1145
Lsp1109I	GCAGC	9 cut(s)	151, 164, 478, 607, 685, 812, 871, 1257, 1555
LweI	GCATC	5 cut(s)	23, 247, 323, 658, 1528
MabI	ACCWGGT	1 cut(s)	1285
MaeI	CTAG	3 cut(s)	1134, 1221, 1630
MaeII	ACGT	3 cut(s)	202, 582, 870
MaeIII	GTNAC	5 cut(s)	343, 727, 979, 991, 1061
MalI	GATC	8 cut(s)	597, 854, 880, 1263, 1316, 1335, 1348, 1497
MboI	GATC	8 cut(s)	595, 852, 878, 1261, 1314, 1333, 1346, 1495
MboII	GAAGA	7 cut(s)	196, 362, 427, 574, 888, 1466, 1593
MflI	RGATCY	3 cut(s)	878, 1333, 1346
MhlI	GDGCHC	1 cut(s)	1150
MlsI	TGGCCA	2 cut(s)	222, 1140
MluCI	AATT	6 cut(s)	121, 261, 273, 431, 1197, 1613
MluNI	TGGCCA	2 cut(s)	222, 1140
MlyI	GAGTC	3 cut(s)	188, 887, 1476
Mox20I	TGGCCA	2 cut(s)	222, 1140
MroXI	GAANNNNTTC	2 cut(s)	425, 1086
MscI	TGGCCA	2 cut(s)	222, 1140
MseI	TTAA	8 cut(s)	333, 471, 1202, 1310, 1338, 1416, 1431, 1512
MslI	CAYNNNNRTG	1 cut(s)	1239
Msp20I	TGGCCA	2 cut(s)	222, 1140
MspA1I	CMGCKG	1 cut(s)	155
MspR9I	CCNGG	3 cut(s)	821, 966, 1287
MvaI	CCWGG	3 cut(s)	821, 966, 1287
MwoI	GCNNNNNNNGC	5 cut(s)	152, 161, 173, 380, 809
NcoI	CCATGG	1 cut(s)	1141
NdeII	GATC	8 cut(s)	595, 852, 878, 1261, 1314, 1333, 1346, 1495
NlaIII	CATG	7 cut(s)	171, 227, 808, 1145, 1192, 1238, 1439
NlaIV	GGNNCC	4 cut(s)	382, 753, 1284, 1524
NmuCI	GTSAC	3 cut(s)	727, 979, 991
PdmI	GAANNNNTTC	2 cut(s)	425, 1086
PfeI	GAWTC	6 cut(s)	227, 426, 651, 919, 1112, 1400
PflFI	GACNNNGTC	1 cut(s)	989
PfoI	TCCNGGA	1 cut(s)	964
PleI	GAGTC	3 cut(s)	188, 887, 1476
PpsI	GAGTC	3 cut(s)	188, 887, 1476
Psp124BI	GAGCTC	1 cut(s)	1150
Psp1406I	AACGTT	1 cut(s)	202
Psp6I	CCWGG	3 cut(s)	819, 964, 1285
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	3 cut(s)	819, 964, 1285
PspN4I	GGNNCC	4 cut(s)	382, 753, 1284, 1524
PspPI	GGNCC	1 cut(s)	381
PsrI	GAACNNNNNNTAC	2 cut(s)	594, 626
PstI	CTGCAG	3 cut(s)	28, 496, 625
PsuI	RGATCY	3 cut(s)	878, 1333, 1346
PsyI	GACNNNGTC	1 cut(s)	989
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	2 cut(s)	1446, 1503
RsaNI	GTAC	2 cut(s)	1445, 1502
RseI	CAYNNNNRTG	1 cut(s)	1239
SacI	GAGCTC	1 cut(s)	1150
SaqAI	TTAA	8 cut(s)	333, 471, 1202, 1310, 1338, 1416, 1431, 1512
Sau3AI	GATC	8 cut(s)	595, 852, 878, 1261, 1314, 1333, 1346, 1495
Sau96I	GGNCC	1 cut(s)	381
SchI	GAGTC	3 cut(s)	188, 887, 1476
ScrFI	CCNGG	3 cut(s)	821, 966, 1287
SduI	GDGCHC	1 cut(s)	1150
SexAI	ACCWGGT	1 cut(s)	1285
SfaNI	GCATC	5 cut(s)	23, 247, 323, 658, 1528
SfcI	CTRYAG	3 cut(s)	24, 492, 621
SmiMI	CAYNNNNRTG	1 cut(s)	1239
SmlI	CTYRAG	2 cut(s)	953, 1151
SmoI	CTYRAG	2 cut(s)	953, 1151
SpeI	ACTAGT	1 cut(s)	1133
Sse9I	AATT	6 cut(s)	121, 261, 273, 431, 1197, 1613
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	3 cut(s)	1134, 1221, 1630
SstI	GAGCTC	1 cut(s)	1150
StyD4I	CCNGG	3 cut(s)	819, 964, 1285
StyI	CCWWGG	1 cut(s)	1141
TaaI	ACNGT	5 cut(s)	249, 343, 517, 989, 1049
TaiI	ACGT	3 cut(s)	205, 585, 873
TaqI	TCGA	4 cut(s)	82, 232, 1020, 1299
TasI	AATT	6 cut(s)	121, 261, 273, 431, 1197, 1613
TatI	WGTACW	1 cut(s)	1501
TfiI	GAWTC	6 cut(s)	227, 426, 651, 919, 1112, 1400
Tru1I	TTAA	8 cut(s)	333, 471, 1202, 1310, 1338, 1416, 1431, 1512
Tru9I	TTAA	8 cut(s)	333, 471, 1202, 1310, 1338, 1416, 1431, 1512
TscAI	CASTG	6 cut(s)	28, 79, 522, 648, 994, 1377
TseFI	GTSAC	3 cut(s)	727, 979, 991
Tsp45I	GTSAC	3 cut(s)	727, 979, 991
TspDTI	ATGAA	5 cut(s)	593, 821, 1006, 1095, 1452
TspGWI	ACGGA	2 cut(s)	321, 1592
TspRI	CASTG	6 cut(s)	28, 79, 522, 648, 994, 1377
Tth111I	GACNNNGTC	1 cut(s)	989
XapI	RAATTY	3 cut(s)	431, 1197, 1613
XmnI	GAANNNNTTC	2 cut(s)	425, 1086
XspI	CTAG	3 cut(s)	1134, 1221, 1630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.