Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004407

Physical Location & Seq

Genomic Coordinates Reverse (-)

42217580 .. 42223345

Gene Structure 5766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0305700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTACCAATTATGCAATGCAGCATGGGATAATATCAGGCCTGTGGTGGCTCGCTACGGTAGAGACGGCAGTGCTGCACTGTCTGGTGGCGGTGGAAAGGTGGCTGCAATGTTAATGAGTTTGCTTAAGCTGTTCTTTGTTGCACCTCCAATATATAGAAGATTGCTTAGCTCTGATAAGAGAGACAGGGATATGTCAGAAAGGTGTCTACTGAAGATTAGATCCACAATCATACCTTCTCCAATAGATCTCTCCAAGGTACTTGTCAGAGATTTAAAGACAAAGTTGCTCACTGGGATGCATGATATGCTATCAGTGGGTCTCATGCATGCCTTGAAGAACAGACATTTAATTAATGATATGCTGAAAATTCCCAAGAAAACATTTTCAGATAACGACTCACAAGTTCAGATTGCTTCCCAGGTTGGCTGTGAAGGTCTTATTAATGCTCTTATTCACCCTCCAATGTTATTACCGTGTGCGACAAATGCTGCAGAAGAGGATGATGGTACCAAAAAAAGGGAACACAACGGAAATAGTGGTGAAATCCAAAACACTAGATCTTTGAAAAGCGTAAGGCTGATCATGACACCACTAATAGGCATCATGTTGAGTAACTGCGATGTATCTGTCCGCATGTCTTGCTTGAACACATGGTGTTATCTATTACCTAGACTTGATACCTCTCTGAATGATTCTTCAATGATTAACCGGGTAGTAGACCCTATGTTTGAAGCAGCTTTTCAACTTGATCCTAATGGTTCTGATTTTGGCAAGGACAAATCATTGAAGTTCCTGCAGCTCTGGATCTATCGAAGGCCAAAATTCTCATGGAAAAACTTCAGGAGCATACAAATGGTGAAAACAGAAGAACAAATGGAATATAAGTACGGCGAGGCTTGCTTTCGTTTCTGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035198 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0061980 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

306

Amino Acids

34.68

Weight (kDa)

9.25

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17522 AT5G17530 AT5G17530 AT5G17530 AT5G17530 AT5G17530 AT5G17530 AT5G17530
fragaria_vesca	FvH4_7g19370 FvH4_7g19370 FvH4_7g19370 FvH4_7g19370 FvH4_7g19370 FvH4_7g19370
malus_domestica	MD01G1108200.v1.1 MD07G1174200.v1.1
prunus_persica	Prupe.2G213100_v2.0.a1 Prupe.2G213100_v2.0.a1 Prupe.2G213100_v2.0.a1 Prupe.2G213100_v2.0.a1
pyrus_communis	pycom01g13510
rosa_chinensis	RchiOBHm_Chr1g0363251
rosa_laevigata	RLG00000027579
rosa_multiflora	Rmu_sc0004027.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293310
rosa_rugosa	Rorug01G0305700 Rorug01G0305800
rosa_samantha	Rh1AG314700 Rh1BG278200 Rh1CG294600 Rh1DG309000
rosa_wichuraiana	Rw1G027890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	2 cut(s)	208, 720
AciI	CCGC	2 cut(s)	90, 634
AclWI	GGATC	3 cut(s)	216, 746, 815
AcsI	RAATTY	2 cut(s)	369, 824
AcuI	CTGAAG	2 cut(s)	233, 826
AdeI	CACNNNGTG	1 cut(s)	657
AfaI	GTAC	4 cut(s)	5, 261, 511, 890
AfiI	CCNNNNNNNGG	2 cut(s)	519, 599
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	7 cut(s)	337, 568, 649, 702, 734, 746, 790
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	4 cut(s)	130, 171, 740, 802
AluI	AGCT	4 cut(s)	130, 171, 740, 802
Alw26I	GTCTC	3 cut(s)	57, 177, 326
AlwI	GGATC	3 cut(s)	216, 746, 815
AoxI	GGCC	2 cut(s)	38, 818
ApeKI	GCWGC	6 cut(s)	20, 74, 104, 491, 737, 799
ApoI	RAATTY	2 cut(s)	369, 824
ArsI	GACNNNNNNTTYG	2 cut(s)	713, 745
AseI	ATTAAT	2 cut(s)	354, 444
Asp700I	GAANNNNTTC	1 cut(s)	839
Asp718I	GGTACC	1 cut(s)	509
AsuC2I	CCSGG	1 cut(s)	713
AsuHPI	GGTGA	3 cut(s)	449, 554, 871
BanI	GGYRCC	1 cut(s)	509
BbvI	GCAGC	6 cut(s)	32, 61, 91, 478, 749, 811
BccI	CCATC	1 cut(s)	500
BceAI	ACGGC	2 cut(s)	82, 907
BciT130I	CCWGG	1 cut(s)	422
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	713
BcoDI	GTCTC	3 cut(s)	57, 177, 326
BfaI	CTAG	3 cut(s)	558, 672, 919
BfmI	CTRYAG	2 cut(s)	492, 797
BfrI	CTTAAG	1 cut(s)	125
BglII	AGATCT	2 cut(s)	247, 560
BisI	GCNGC	6 cut(s)	21, 75, 105, 492, 738, 800
BlpI	GCTNAGC	1 cut(s)	167
BlsI	GCNGC	6 cut(s)	22, 76, 106, 493, 739, 801
Bme1390I	CCNGG	2 cut(s)	422, 713
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	2 cut(s)	422, 713
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	2 cut(s)	288, 612
BmuI	ACTGGG	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	713
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	255, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	519, 599
Bse1I	ACTGG	1 cut(s)	298
Bse3DI	GCAATG	2 cut(s)	22, 114
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	255, 420
BseGI	GGATG	2 cut(s)	303, 508
BseLI	CCNNNNNNNGG	2 cut(s)	519, 599
BseMI	GCAATG	2 cut(s)	22, 114
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	6 cut(s)	32, 61, 91, 478, 749, 811
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	40, 820
BshNI	GGYRCC	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	712
BslI	CCNNNNNNNGG	2 cut(s)	519, 599
BsmAI	GTCTC	3 cut(s)	57, 177, 326
BsmBI	CGTCTC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	40, 820
Bso31I	GGTCTC	1 cut(s)	326
Bsp143I	GATC	6 cut(s)	221, 247, 560, 582, 751, 807
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	2 cut(s)	90, 634
BspANI	GGCC	2 cut(s)	40, 820
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	1 cut(s)	511
BspMAI	CTGCAG	2 cut(s)	496, 801
BspPI	GGATC	3 cut(s)	216, 746, 815
BspT107I	GGYRCC	1 cut(s)	509
BspTI	CTTAAG	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	326
BsrDI	GCAATG	2 cut(s)	22, 114
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	255, 420
BssMI	GATC	6 cut(s)	221, 247, 560, 582, 751, 807
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	3 cut(s)	59, 81, 477
Bst6I	CTCTTC	1 cut(s)	492
BstAFI	CTTAAG	1 cut(s)	125
BstAPI	GCANNNNNTGC	2 cut(s)	307, 642
BstC8I	GCNNGC	3 cut(s)	52, 330, 901
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	303, 508
BstKTI	GATC	6 cut(s)	224, 250, 563, 585, 754, 810
BstMAI	GTCTC	3 cut(s)	57, 177, 326
BstMBI	GATC	6 cut(s)	221, 247, 560, 582, 751, 807
BstMWI	GCNNNNNNNGC	4 cut(s)	307, 488, 642, 900
BstNI	CCWGG	1 cut(s)	422
BstNSI	RCATGY	2 cut(s)	332, 640
BstSCI	CCNGG	2 cut(s)	420, 711
BstSFI	CTRYAG	2 cut(s)	492, 797
BstV1I	GCAGC	6 cut(s)	32, 61, 91, 478, 749, 811
BstX2I	RGATCY	4 cut(s)	221, 247, 560, 807
BstYI	RGATCY	4 cut(s)	221, 247, 560, 807
BsuRI	GGCC	2 cut(s)	40, 820
BtgZI	GCGATG	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	303, 508
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	4 cut(s)	76, 77, 291, 321
Cac8I	GCNNGC	3 cut(s)	52, 330, 901
CciI	TCATGA	1 cut(s)	585
Csp6I	GTAC	4 cut(s)	4, 260, 510, 889
CviAII	CATG	9 cut(s)	24, 302, 325, 329, 586, 607, 637, 654, 831
CviQI	GTAC	4 cut(s)	4, 260, 510, 889
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	6 cut(s)	223, 249, 562, 584, 753, 809
DpnII	GATC	6 cut(s)	221, 247, 560, 582, 751, 807
DraI	TTTAAA	1 cut(s)	276
DraIII	CACNNNGTG	1 cut(s)	657
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	255
Eco147I	AGGCCT	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	326
Eco57I	CTGAAG	2 cut(s)	233, 826
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	255
EcoT22I	ATGCAT	2 cut(s)	303, 330
ErhI	CCWWGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	9 cut(s)	27, 305, 328, 332, 589, 610, 640, 657, 834
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	9 cut(s)	23, 301, 324, 328, 585, 606, 636, 653, 830
FbaI	TGATCA	1 cut(s)	582
FblI	GTMKAC	2 cut(s)	208, 720
Fnu4HI	GCNGC	6 cut(s)	21, 75, 105, 492, 738, 800
FokI	GGATG	2 cut(s)	310, 515
Fsp4HI	GCNGC	6 cut(s)	21, 75, 105, 492, 738, 800
FspBI	CTAG	3 cut(s)	558, 672, 919
GluI	GCNGC	6 cut(s)	21, 75, 105, 492, 738, 800
HaeIII	GGCC	2 cut(s)	40, 820
HapII	CCGG	1 cut(s)	712
Hin1II	CATG	9 cut(s)	27, 305, 328, 332, 589, 610, 640, 657, 834
HinfI	GANTC	2 cut(s)	398, 695
HpaII	CCGG	1 cut(s)	712
HphI	GGTGA	3 cut(s)	449, 554, 871
Hpy166II	GTNNAC	2 cut(s)	209, 721
Hpy188I	TCNGA	7 cut(s)	175, 199, 269, 391, 411, 690, 766
Hpy188III	TCNNGA	3 cut(s)	586, 805, 844
Hpy8I	GTNNAC	2 cut(s)	209, 721
HpyAV	CCTTC	3 cut(s)	246, 428, 810
HpyCH4III	ACNGT	3 cut(s)	59, 81, 477
HpyCH4V	TGCA	9 cut(s)	15, 20, 77, 107, 143, 301, 328, 494, 799
HpyF10VI	GCNNNNNNNGC	4 cut(s)	307, 488, 642, 900
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	9 cut(s)	27, 305, 328, 332, 589, 610, 640, 657, 834
KpnI	GGTACC	1 cut(s)	513
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	6 cut(s)	221, 247, 560, 582, 751, 807
LmnI	GCTCC	1 cut(s)	846
Lsp1109I	GCAGC	6 cut(s)	32, 61, 91, 478, 749, 811
LweI	GCATC	2 cut(s)	288, 612
MaeI	CTAG	3 cut(s)	558, 672, 919
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	6 cut(s)	223, 249, 562, 584, 753, 809
MboI	GATC	6 cut(s)	221, 247, 560, 582, 751, 807
MboII	GAAGA	6 cut(s)	171, 226, 349, 509, 690, 881
MflI	RGATCY	4 cut(s)	221, 247, 560, 807
MluCI	AATT	4 cut(s)	8, 351, 369, 824
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	5 cut(s)	156, 471, 493, 694, 889
Mph1103I	ATGCAT	2 cut(s)	303, 330
MroXI	GAANNNNTTC	1 cut(s)	839
MseI	TTAA	7 cut(s)	113, 126, 275, 350, 354, 444, 708
MslI	CAYNNNNRTG	2 cut(s)	296, 854
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	1 cut(s)	712
MspR9I	CCNGG	2 cut(s)	422, 713
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	4 cut(s)	307, 488, 642, 900
NciI	CCSGG	1 cut(s)	713
NdeII	GATC	6 cut(s)	221, 247, 560, 582, 751, 807
NlaIII	CATG	9 cut(s)	27, 305, 328, 332, 589, 610, 640, 657, 834
NlaIV	GGNNCC	1 cut(s)	511
NsiI	ATGCAT	2 cut(s)	303, 330
NspI	RCATGY	2 cut(s)	332, 640
PacI	TTAATTAA	1 cut(s)	354
PaeI	GCATGC	1 cut(s)	332
PagI	TCATGA	1 cut(s)	585
PceI	AGGCCT	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	1 cut(s)	695
PkrI	GCNGC	6 cut(s)	22, 76, 106, 493, 739, 801
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PshBI	ATTAAT	2 cut(s)	354, 444
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	511
PstI	CTGCAG	2 cut(s)	496, 801
PsuI	RGATCY	4 cut(s)	221, 247, 560, 807
RsaI	GTAC	4 cut(s)	5, 261, 511, 890
RsaNI	GTAC	4 cut(s)	4, 260, 510, 889
RseI	CAYNNNNRTG	2 cut(s)	296, 854
SaqAI	TTAA	7 cut(s)	113, 126, 275, 350, 354, 444, 708
SatI	GCNGC	6 cut(s)	21, 75, 105, 492, 738, 800
Sau3AI	GATC	6 cut(s)	221, 247, 560, 582, 751, 807
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	2 cut(s)	422, 713
SfaNI	GCATC	2 cut(s)	288, 612
SfcI	CTRYAG	2 cut(s)	492, 797
SmiMI	CAYNNNNRTG	2 cut(s)	296, 854
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	4 cut(s)	8, 351, 369, 824
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	2 cut(s)	90, 634
SspMI	CTAG	3 cut(s)	558, 672, 919
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	420, 711
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	3 cut(s)	59, 81, 477
TaqI	TCGA	1 cut(s)	814
TasI	AATT	4 cut(s)	8, 351, 369, 824
TfiI	GAWTC	1 cut(s)	695
Tru1I	TTAA	7 cut(s)	113, 126, 275, 350, 354, 444, 708
Tru9I	TTAA	7 cut(s)	113, 126, 275, 350, 354, 444, 708
TscAI	CASTG	4 cut(s)	76, 84, 298, 321
TseI	GCWGC	6 cut(s)	20, 74, 104, 491, 737, 799
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	4 cut(s)	76, 84, 298, 321
Vha464I	CTTAAG	1 cut(s)	125
VspI	ATTAAT	2 cut(s)	354, 444
XapI	RAATTY	2 cut(s)	369, 824
XceI	RCATGY	2 cut(s)	332, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	828
XmiI	GTMKAC	2 cut(s)	208, 720
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	3 cut(s)	558, 672, 919
Zsp2I	ATGCAT	2 cut(s)	303, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.