Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0017929

Physical Location & Seq

Genomic Coordinates Reverse (-)

17189530 .. 17189941

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATTGGCATTCTTGGAAGTTCAGGCCGAATTTCTGAGATGAAGGAAGTGATCAATCAGATGCAAAATGACTCCTCTGAATGCAAAGACTCGGTGTTTGTGGCTGCAGTCAAGACATACGCAAGAGCAGGGCTGCTGGACGGGGCGACTATGGTCAAAGAGTCCAGGCTTGAAGACGCTTGTCGTCTTTTCATGGAGCAATGCTGTGGGTGGGAAGTGAGCTTAACGGTGCGGTCCTTGAACTTGCTTATGCTTGCTTTGTGCCAGAAGGGTCGTTCGAATATTGCACTGCATGTTTTCCAAAAGATGGATAAATGGATTATCAGAGTTACCGGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

114

Amino Acids

12.62

Weight (kDa)

8.33

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01360 AT2G01390
fragaria_vesca	FvH4_7g21510
malus_domestica	MD00G1058400.v1.1 MD02G1154900.v1.1 MD15G1269300.v1.1
prunus_persica	Prupe.7G148400_v2.0.a1 Prupe.7G148400_v2.0.a1
pyrus_communis	pycom02g12250 pycom02g12260 pycom15g23370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	307
AciI	CCGC	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	173, 241
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	2 cut(s)	104, 133
ApoI	RAATTY	1 cut(s)	30
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspS9I	GGNCC	1 cut(s)	234
AsuII	TTCGAA	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	91, 120
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	166
BclI	TGATCA	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	2 cut(s)	105, 134
BlsI	GCNGC	2 cut(s)	106, 135
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	166
BmsI	GCATC	1 cut(s)	51
BoxI	GACNNNNGTC	2 cut(s)	152, 180
BpiI	GAAGAC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	91, 120
BshFI	GGCC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmI	GAATGC	2 cut(s)	9, 86
BsnI	GGCC	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	109
BspT104I	TTCGAA	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	206
BssMI	GATC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	166
BstNSI	RCATGY	1 cut(s)	296
BstPAI	GACNNNNGTC	2 cut(s)	152, 180
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	91, 120
BstV2I	GAAGAC	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	1 cut(s)	185
CviAII	CATG	2 cut(s)	193, 293
CviJI	RGCY	5 cut(s)	27, 104, 133, 169, 222
CviKI_1	RGCY	5 cut(s)	27, 104, 133, 169, 222
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	2 cut(s)	196, 296
FaiI	YATR	5 cut(s)	118, 152, 194, 251, 294
FatI	CATG	2 cut(s)	192, 292
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	105, 134
Fsp4HI	GCNGC	2 cut(s)	105, 134
GluI	GCNGC	2 cut(s)	105, 134
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	196, 296
HinfI	GANTC	3 cut(s)	71, 89, 161
HpaII	CCGG	1 cut(s)	333
Hpy188I	TCNGA	4 cut(s)	37, 60, 79, 326
Hpy188III	TCNNGA	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	37, 262
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	5 cut(s)	64, 84, 107, 287, 292
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	196, 296
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	6 cut(s)	9, 114, 122, 151, 178, 278
Lsp1109I	GCAGC	2 cut(s)	91, 120
LweI	GCATC	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	1 cut(s)	185
MluCI	AATT	1 cut(s)	30
MlyI	GAGTC	3 cut(s)	65, 83, 170
MnlI	CCTC	1 cut(s)	85
MseI	TTAA	2 cut(s)	224, 340
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	166
Mva1269I	GAATGC	2 cut(s)	9, 86
MvaI	CCWGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	196, 296
NspI	RCATGY	1 cut(s)	296
NspV	TTCGAA	1 cut(s)	278
PctI	GAATGC	2 cut(s)	9, 86
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	106, 135
PleI	GAGTC	3 cut(s)	65, 83, 169
PpsI	GAGTC	3 cut(s)	65, 83, 169
PshAI	GACNNNNGTC	2 cut(s)	152, 180
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	224, 340
SatI	GCNGC	2 cut(s)	105, 134
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	3 cut(s)	65, 83, 170
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	1 cut(s)	224
SfaNI	GCATC	1 cut(s)	51
SfcI	CTRYAG	1 cut(s)	105
SfuI	TTCGAA	1 cut(s)	278
SinI	GGWCC	1 cut(s)	234
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	1 cut(s)	232
SspI	AATATT	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	278
TasI	AATT	1 cut(s)	30
Tru1I	TTAA	2 cut(s)	224, 340
Tru9I	TTAA	2 cut(s)	224, 340
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	2 cut(s)	104, 133
TspDTI	ATGAA	2 cut(s)	56, 181
TspRI	CASTG	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	234
XapI	RAATTY	1 cut(s)	30
XceI	RCATGY	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.