Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0017929

Physical Location & Seq

Genomic Coordinates Forward (+)

10643403 .. 10645687

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1058400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTTGGACATTTTCGGAGAAGCCGGGAGGGTTTCGTCAATGACCCATGTTTTCAAGCAAATGCAGGAAAAGGGGATCAAGATTGATGACATTACTTACACTTCTCTGATGCATTGGCTTTCGAATGCCGGAGATGTTGATGGGGCTGTGCATATTTGGGAGGAGATGAGAGCTCAGGGCTGCTGGAGCAGCAGATTTCGCATTCGGAGGAAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

73

Amino Acids

8.36

Weight (kDa)

7.96

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 41	4.8e-08	PPR repeat family
PPR_3	PF13812	17 - 61	1.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	24 - 57	1.9e-06	PPR repeat
PPR_2	PF13041	30 - 61	9.7e-07	PPR repeat family
PPR	PF01535	31 - 61	9.8e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01360 AT2G01390
fragaria_vesca	FvH4_7g21510
malus_domestica	MD00G1058400.v1.1 MD02G1154900.v1.1 MD15G1269300.v1.1
prunus_persica	Prupe.7G148400_v2.0.a1 Prupe.7G148400_v2.0.a1
pyrus_communis	pycom02g12250 pycom02g12260 pycom15g23370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	55
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw21I	GWGCWC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	180, 189
AsuC2I	CCSGG	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	2 cut(s)	167, 201
BccI	CCATC	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	25
BisI	GCNGC	2 cut(s)	181, 190
BlsI	GCNGC	2 cut(s)	182, 191
Bme1390I	CCNGG	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu14I	TTCGAA	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	167, 201
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	24, 129
BsmI	GAATGC	2 cut(s)	130, 201
Bsp119I	TTCGAA	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	187
BspPI	GGATC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	122
BssMI	GATC	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	174
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 189, 198
BstSCI	CCNGG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	167, 201
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	6 cut(s)	23, 118, 146, 173, 180, 214
CviKI_1	RGCY	6 cut(s)	23, 118, 146, 173, 180, 214
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	175
FaeI	CATG	1 cut(s)	50
FaiI	YATR	2 cut(s)	48, 153
FatI	CATG	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	181, 190
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	181, 190
GluI	GCNGC	2 cut(s)	181, 190
GsuI	CTGGAG	1 cut(s)	205
HapII	CCGG	2 cut(s)	24, 129
Hin1II	CATG	1 cut(s)	50
HpaII	CCGG	2 cut(s)	24, 129
Hpy188I	TCNGA	3 cut(s)	17, 108, 207
Hpy188III	TCNNGA	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	64, 112, 151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 189, 198
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	5 cut(s)	37, 50, 142, 161, 169
Lsp1109I	GCAGC	2 cut(s)	167, 201
LweI	GCATC	1 cut(s)	99
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	175
MnlI	CCTC	3 cut(s)	21, 154, 201
Mph1103I	ATGCAT	1 cut(s)	114
MspI	CCGG	2 cut(s)	24, 129
MspR9I	CCNGG	1 cut(s)	25
Mva1269I	GAATGC	2 cut(s)	130, 201
MwoI	GCNNNNNNNGC	3 cut(s)	186, 189, 198
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	114
NspV	TTCGAA	1 cut(s)	122
PctI	GAATGC	2 cut(s)	130, 201
PkrI	GCNGC	2 cut(s)	182, 191
Psp124BI	GAGCTC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	175
SatI	GCNGC	2 cut(s)	181, 190
Sau3AI	GATC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	1 cut(s)	175
SfaNI	GCATC	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	122
SgeI	CNNG	9 cut(s)	36, 37, 59, 67, 77, 91, 141, 188, 196
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	23
TaqI	TCGA	1 cut(s)	122
TseI	GCWGC	2 cut(s)	180, 189
Zsp2I	ATGCAT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.