Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0017929

Physical Location & Seq

Genomic Coordinates Forward (+)

8800356 .. 8801282

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCGCAGTTTCCGTAACCTCCATGGATTTCTGAAGCACCTTGCAGCTTTCACCGCCAGGTGCTCAAAACCCACTCTCCGATGGAAAGGTCGTGGCTTTTTATTTTATTTTTTCAACCGGGTTGCTGGGTTTAAAGGGTTTAAGCACGACCAGTTCACCTACACGACAATGCTGGACATTTTCGGAGAAGCCGGGAGGGTTTCATCAATGTCCCATGTTTTCAAGCAAATGCAGGAAAAGGGGGTCAAAATTGATGCCACTTGGGAGGAGATGAAAGCTCAGGGATATCCTCCCACTGTTGTTTCTTACACTGCTTATATGAAGATTTTGCTTGGTGATAACAGAGTGAAGGAGGCTACTGATGTTTACAGGGAAATGACTCAATGTGGATGTTCTCCAACTTGTCATACTTGCACTGTGTTAATGGACTTCCTAATTGGTTCGGTTTGTGCATACGGTTATACTGGTTGTTTACGCACGGTGTGTGTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

165

Amino Acids

18.69

Weight (kDa)

9.19

Isoelectric Point (pI)

25.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	50 - 86	5e-06	PPR repeat family
PPR_2	PF13041	98 - 143	8e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01360 AT2G01390
fragaria_vesca	FvH4_7g21510
malus_domestica	MD00G1058400.v1.1 MD02G1154900.v1.1 MD15G1269300.v1.1
prunus_persica	Prupe.7G148400_v2.0.a1 Prupe.7G148400_v2.0.a1
pyrus_communis	pycom02g12250 pycom02g12260 pycom15g23370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AciI	CCGC	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	53
AdeI	CACNNNGTG	1 cut(s)	483
AgsI	TTSAA	2 cut(s)	115, 223
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	2 cut(s)	47, 278
AluI	AGCT	2 cut(s)	47, 278
Alw21I	GWGCWC	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	6
AsuC2I	CCSGG	2 cut(s)	119, 193
AsuHPI	GGTGA	3 cut(s)	43, 148, 347
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	58
BcnI	CCSGG	2 cut(s)	119, 193
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	3 cut(s)	58, 119, 193
BmrFI	CCNGG	3 cut(s)	58, 119, 193
BmsI	GCATC	1 cut(s)	244
Bpu10I	CCTNAGC	1 cut(s)	279
BpuMI	CCSGG	2 cut(s)	119, 193
BsaJI	CCNNGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bse1I	ACTGG	2 cut(s)	151, 469
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	151, 469
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	118, 192
BslFI	GGGAC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	151, 469
BssECI	CCNNGG	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	4 cut(s)	298, 418, 458, 481
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	3 cut(s)	56, 117, 191
BstV1I	GCAGC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	395
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	3 cut(s)	294, 309, 414
CfoI	GCGC	1 cut(s)	6
CviAII	CATG	2 cut(s)	23, 215
CviJI	RGCY	5 cut(s)	47, 96, 191, 278, 356
CviKI_1	RGCY	5 cut(s)	47, 96, 191, 278, 356
DdeI	CTNAG	1 cut(s)	279
DraI	TTTAAA	1 cut(s)	133
DraIII	CACNNNGTG	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	56
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	2 cut(s)	26, 218
FaiI	YATR	7 cut(s)	24, 216, 318, 320, 408, 454, 462
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	2 cut(s)	22, 214
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	45
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	129
HapII	CCGG	2 cut(s)	118, 192
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	26, 218
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	2 cut(s)	118, 192
HphI	GGTGA	3 cut(s)	43, 148, 347
Hpy166II	GTNNAC	3 cut(s)	156, 367, 473
Hpy188I	TCNGA	3 cut(s)	33, 80, 185
Hpy8I	GTNNAC	3 cut(s)	156, 367, 473
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	4 cut(s)	298, 418, 458, 481
HpyCH4V	TGCA	4 cut(s)	44, 232, 414, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	26, 218
HspAI	GCGC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	2 cut(s)	249, 435
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	5 cut(s)	29, 189, 259, 300, 346
MseI	TTAA	4 cut(s)	132, 141, 422, 493
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	2 cut(s)	118, 192
MspR9I	CCNGG	3 cut(s)	58, 119, 193
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	2 cut(s)	119, 193
NcoI	CCATGG	1 cut(s)	22
NlaIII	CATG	2 cut(s)	26, 218
NsbI	TGCGCA	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	4 cut(s)	132, 141, 422, 493
SatI	GCNGC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	3 cut(s)	58, 119, 193
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	7 cut(s)	21, 42, 49, 62, 91, 161, 280
SfaNI	GCATC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	249, 435
SsiI	CCGC	1 cut(s)	54
StyD4I	CCNGG	3 cut(s)	56, 117, 191
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	4 cut(s)	298, 418, 458, 481
TasI	AATT	2 cut(s)	249, 435
Tru1I	TTAA	4 cut(s)	132, 141, 422, 493
Tru9I	TTAA	4 cut(s)	132, 141, 422, 493
TscAI	CASTG	3 cut(s)	301, 316, 421
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	3 cut(s)	192, 287, 335
TspRI	CASTG	3 cut(s)	301, 316, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.