Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0017929

Physical Location & Seq

Genomic Coordinates Forward (+)

12821842 .. 12824094

Gene Structure 2253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1154900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAAAAGTCGTGGCTTTTTTCTTTTCTTTTTTTCAACTGGGTTGCTGGGTTTAAAGGGTTTAAGCACGACCAGTTCACCTACACGACAATGCTGGACATTTTCGGAGAAGCCGGGAGGGTTTCATCAATGTCCCATGTTTTCAAGCAAATGCAGGAAAAGGGGGTTAAAATCGATGCCGTTACTTACACTCTGATGTATTGGCCTTCGAATGCCAGCGATGTCGATGGGGCTGTGCAGACTTGGGAGGAGATGAAAGCTCAGGGATATCCTCCCACAGTACCACAATTAGTGAAGGAGGCTACTGATGTTTACAGGGAAATGACTCAATGTGGATGTTCTCCAACTTGTCGTACTTGCACTGTGTTAATGGACTACCTAATTGGTTCTGGAGACACATGGACAATGAACCATGTCCTTTGGTTTATGAAAGAAAATCGCCTTGCCCTTCGTTACCCTGTATTTCTAGAGGCAGTCAGAACTTTCAAAATTGCTGGCGAGAGTGATTCCCTCCTCAGGCAAGTTCATCCTCACTTTTCAGTTGGCTCTGGCAATCAGGAGGAAAAAAATCTCGTTGCCATAGACCGCTTGCTTGCTGAAAATGGAGATAAGAATATACAATTGCATTGTGCTATCACCTCAACCATCATTGAGGTAAATTGTGGACGTTGCAGACTTGATGGTGCTTTATTGGCTTTCGAATATAGTGTGAAAATGGGTATAATCCTTGAGAGAAATACATATCTGGCTTTGGTAGGAGCTTTGATCAGATCAAAGTCATTTCTAAAAGTGGTGGAGATTGCTGCAGAGATGATTAGGGCTGGATGTTCTCTTGGAATATACTTAAGTGCACTTCTAATACATAGGCTCGGGCGAGCTAGAAGGACACTTTGTGCTGCAAAAATCTTTAATTTATTGCCTTATGATCACAAGTGCACTGCAACTTACACTGCGTTGAATGGGGCTGCTCTGCTGGGAGTGCTGATAAAGGGCTTCAAATATTTGAAGCGATGCGAGGGAAAGGATTTTGTCCCTTTTTGGGCACATACAATGTGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

354

Amino Acids

39.79

Weight (kDa)

8.6

Isoelectric Point (pI)

21.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	24 - 66	1.9e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01360 AT2G01390
fragaria_vesca	FvH4_7g21510
malus_domestica	MD00G1058400.v1.1 MD02G1154900.v1.1 MD15G1269300.v1.1
prunus_persica	Prupe.7G148400_v2.0.a1 Prupe.7G148400_v2.0.a1
pyrus_communis	pycom02g12250 pycom02g12260 pycom15g23370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	586
AdeI	CACNNNGTG	1 cut(s)	893
AfaI	GTAC	2 cut(s)	282, 355
AfiI	CCNNNNNNNGG	2 cut(s)	516, 1039
AflII	CTTAAG	1 cut(s)	844
AgsI	TTSAA	6 cut(s)	37, 145, 487, 958, 997, 1006
AluBI	AGCT	3 cut(s)	260, 761, 878
AluI	AGCT	3 cut(s)	260, 761, 878
Alw21I	GWGCWC	2 cut(s)	853, 938
Alw26I	GTCTC	1 cut(s)	387
Alw44I	GTGCAC	2 cut(s)	849, 934
Ama87I	CYCGRG	1 cut(s)	869
AoxI	GGCC	1 cut(s)	203
ApaLI	GTGCAC	2 cut(s)	849, 934
ApeKI	GCWGC	3 cut(s)	803, 896, 965
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	70, 628
AsuII	TTCGAA	2 cut(s)	209, 699
AvaI	CYCGRG	1 cut(s)	869
AxyI	CCTNAGG	1 cut(s)	515
BaeGI	GKGCMC	3 cut(s)	853, 938, 1045
Bbv12I	GWGCWC	2 cut(s)	853, 938
BbvI	GCAGC	3 cut(s)	790, 883, 952
BccI	CCATC	3 cut(s)	221, 653, 674
BceAI	ACGGC	1 cut(s)	164
BclI	TGATCA	2 cut(s)	765, 925
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	2 cut(s)	467, 879
BfmI	CTRYAG	1 cut(s)	804
BfrI	CTTAAG	1 cut(s)	844
BisI	GCNGC	3 cut(s)	804, 897, 966
BlsI	GCNGC	3 cut(s)	805, 898, 967
Bme1390I	CCNGG	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	869
BmrFI	CCNGG	1 cut(s)	115
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	166, 1001
BmuI	ACTGGG	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	2 cut(s)	209, 699
BpuEI	CTTGAG	1 cut(s)	749
BpuMI	CCSGG	1 cut(s)	115
Bsa29I	ATCGAT	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	516, 1039
Bse1I	ACTGG	2 cut(s)	44, 73
Bse21I	CCTNAGG	1 cut(s)	515
BseCI	ATCGAT	1 cut(s)	174
BseGI	GGATG	3 cut(s)	341, 526, 830
BseLI	CCNNNNNNNGG	2 cut(s)	516, 1039
BseMII	CTCAG	2 cut(s)	275, 529
BseNI	ACTGG	2 cut(s)	44, 73
BseRI	GAGGAG	2 cut(s)	263, 503
BseSI	GKGCMC	3 cut(s)	853, 938, 1045
BseXI	GCAGC	3 cut(s)	790, 883, 952
BseYI	CCCAGC	2 cut(s)	47, 973
BsgI	GTGCAG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	205
BshVI	ATCGAT	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	853, 938
BsiHKCI	CYCGRG	1 cut(s)	869
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	2 cut(s)	118, 1016
BslI	CCNNNNNNNGG	2 cut(s)	516, 1039
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	118, 1016
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	869
Bsp119I	TTCGAA	2 cut(s)	209, 699
Bsp1286I	GDGCHC	3 cut(s)	853, 938, 1045
Bsp143I	GATC	3 cut(s)	765, 770, 925
BspACI	CCGC	1 cut(s)	586
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	2 cut(s)	274, 528
BspDI	ATCGAT	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	808
BspT104I	TTCGAA	2 cut(s)	209, 699
BspTI	CTTAAG	1 cut(s)	844
BsrI	ACTGG	2 cut(s)	44, 73
BssMI	GATC	3 cut(s)	765, 770, 925
Bst4CI	ACNGT	2 cut(s)	280, 364
BstAFI	CTTAAG	1 cut(s)	844
BstBI	TTCGAA	2 cut(s)	209, 699
BstC8I	GCNNGC	5 cut(s)	217, 496, 590, 594, 876
BstDEI	CTNAG	2 cut(s)	261, 515
BstF5I	GGATG	3 cut(s)	341, 526, 830
BstKTI	GATC	3 cut(s)	768, 773, 928
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	3 cut(s)	765, 770, 925
BstMWI	GCNNNNNNNGC	2 cut(s)	692, 979
BstSCI	CCNGG	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	3 cut(s)	853, 938, 1045
BstV1I	GCAGC	3 cut(s)	790, 883, 952
Bsu15I	ATCGAT	1 cut(s)	174
Bsu36I	CCTNAGG	1 cut(s)	515
BsuRI	GGCC	1 cut(s)	205
BsuTUI	ATCGAT	1 cut(s)	174
BtgZI	GCGATG	2 cut(s)	234, 1024
BtsCI	GGATG	3 cut(s)	341, 526, 830
BtsI	GCAGTG	2 cut(s)	936, 948
BtsIMutI	CAGTG	3 cut(s)	360, 936, 948
Cac8I	GCNNGC	5 cut(s)	217, 496, 590, 594, 876
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	281, 354
CviAII	CATG	3 cut(s)	137, 399, 413
CviQI	GTAC	2 cut(s)	281, 354
DdeI	CTNAG	2 cut(s)	261, 515
DpnI	GATC	3 cut(s)	767, 772, 927
DpnII	GATC	3 cut(s)	765, 770, 925
DraI	TTTAAA	1 cut(s)	55
DraIII	CACNNNGTG	1 cut(s)	893
Eco32I	GATATC	1 cut(s)	269
Eco81I	CCTNAGG	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	869
EcoRV	GATATC	1 cut(s)	269
FaeI	CATG	3 cut(s)	140, 402, 416
FaqI	GGGAC	2 cut(s)	118, 1016
FatI	CATG	3 cut(s)	136, 398, 412
FbaI	TGATCA	2 cut(s)	765, 925
Fnu4HI	GCNGC	3 cut(s)	804, 897, 966
FokI	GGATG	3 cut(s)	348, 513, 837
Fsp4HI	GCNGC	3 cut(s)	804, 897, 966
FspBI	CTAG	2 cut(s)	467, 879
GluI	GCNGC	3 cut(s)	804, 897, 966
GsaI	CCCAGC	2 cut(s)	51, 977
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	1 cut(s)	114
Hin1II	CATG	3 cut(s)	140, 402, 416
HinfI	GANTC	2 cut(s)	325, 506
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	70, 628
Hpy166II	GTNNAC	5 cut(s)	78, 313, 665, 851, 936
Hpy188I	TCNGA	4 cut(s)	107, 195, 479, 770
Hpy188III	TCNNGA	3 cut(s)	390, 467, 557
Hpy8I	GTNNAC	5 cut(s)	78, 313, 665, 851, 936
HpyAV	CCTTC	4 cut(s)	216, 289, 458, 876
HpyCH4III	ACNGT	2 cut(s)	280, 364
HpyCH4IV	ACGT	1 cut(s)	667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	692, 979
HpyF3I	CTNAG	2 cut(s)	261, 515
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	3 cut(s)	140, 402, 416
Ksp22I	TGATCA	2 cut(s)	765, 925
Kzo9I	GATC	3 cut(s)	765, 770, 925
LmnI	GCTCC	1 cut(s)	758
Lsp1109I	GCAGC	3 cut(s)	790, 883, 952
LweI	GCATC	2 cut(s)	166, 1001
MaeI	CTAG	2 cut(s)	467, 879
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	2 cut(s)	181, 452
MalI	GATC	3 cut(s)	767, 772, 927
MboI	GATC	3 cut(s)	765, 770, 925
MfeI	CAATTG	1 cut(s)	620
MhlI	GDGCHC	3 cut(s)	853, 938, 1045
MluCI	AATT	6 cut(s)	287, 381, 489, 620, 658, 910
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	368
MseI	TTAA	7 cut(s)	54, 63, 168, 368, 845, 909, 1060
MslI	CAYNNNNRTG	2 cut(s)	89, 194
MspCI	CTTAAG	1 cut(s)	844
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	115
MunI	CAATTG	1 cut(s)	620
Mva1269I	GAATGC	1 cut(s)	217
MwoI	GCNNNNNNNGC	2 cut(s)	692, 979
NciI	CCSGG	1 cut(s)	115
NdeII	GATC	3 cut(s)	765, 770, 925
NlaIII	CATG	3 cut(s)	140, 402, 416
NspV	TTCGAA	2 cut(s)	209, 699
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	3 cut(s)	805, 898, 967
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PspFI	CCCAGC	2 cut(s)	47, 973
PstI	CTGCAG	1 cut(s)	808
RsaI	GTAC	2 cut(s)	282, 355
RsaNI	GTAC	2 cut(s)	281, 354
RseI	CAYNNNNRTG	2 cut(s)	89, 194
SaqAI	TTAA	7 cut(s)	54, 63, 168, 368, 845, 909, 1060
SatI	GCNGC	3 cut(s)	804, 897, 966
Sau3AI	GATC	3 cut(s)	765, 770, 925
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	3 cut(s)	853, 938, 1045
SetI	ASST	8 cut(s)	83, 262, 381, 641, 657, 670, 763, 880
SfaNI	GCATC	2 cut(s)	166, 1001
SfcI	CTRYAG	1 cut(s)	804
SfuI	TTCGAA	2 cut(s)	209, 699
SmiMI	CAYNNNNRTG	2 cut(s)	89, 194
SmlI	CTYRAG	2 cut(s)	728, 844
SmoI	CTYRAG	2 cut(s)	728, 844
Sse9I	AATT	6 cut(s)	287, 381, 489, 620, 658, 910
SsiI	CCGC	1 cut(s)	586
SspI	AATATT	1 cut(s)	1001
SspMI	CTAG	2 cut(s)	467, 879
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	280, 364
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	4 cut(s)	174, 209, 225, 699
TasI	AATT	6 cut(s)	287, 381, 489, 620, 658, 910
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	7 cut(s)	54, 63, 168, 368, 845, 909, 1060
Tru9I	TTAA	7 cut(s)	54, 63, 168, 368, 845, 909, 1060
TscAI	CASTG	3 cut(s)	367, 943, 955
TseI	GCWGC	3 cut(s)	803, 896, 965
TspDTI	ATGAA	5 cut(s)	114, 269, 422, 443, 515
TspRI	CASTG	3 cut(s)	367, 943, 955
Vha464I	CTTAAG	1 cut(s)	844
VneI	GTGCAC	2 cut(s)	849, 934
XbaI	TCTAGA	1 cut(s)	466
XspI	CTAG	2 cut(s)	467, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.