Prupe.7G148400_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
16077003 .. 16080093
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G148400.2

Sequence Viewer

Length: 1767 bp
ATGCGCGGTTTCTATAACCTCCATGGATTTCTCAAACGCCTCGCAGCTTTCACGGCCATCCATGATCATCAATGTCCAAAGAGTTCCATCACCATCCATTCACTCAACCGAATCAAACAAAACGAACCCAGTAAGCCAATTACCAGAAAAACCACCAAGAAGCACTTCAAATCCAGTAAAAAGCAAGAAGATGCAGACCCAAAGATTTATATGAGAGAAACCATTGGAAACATATACAAAATTCTCAAATATTCAACATGGGATTCTGCTCAGGACCAATTACAGAGGCTGCCCATAAGATGGGACTCTTACACAGTGAGCCAGGTGCTCAAAACCCATCCCCCAATGGAAAAAGCCTGGCTTTTTTTCAACTGGGTTGCTGGGATTCGAGGGTTTAAGCACGACCACTTCACGTACACAACAATGCTGGACATTTTTGGAGAGGCGGGGAGGGTTTCGTCCATGACCCATGTTTTCAAGCAAATGCAAGAGAAGGACATAAGGATTGATGCTTTTACTTACACTTCGCTGATGCATTGGCTTTCTAGTGCTGGGGATGTTGATGGGGCTCTGAAGGTTTGGGAGGAGATGAGAGCTCAGGGCTGTGTTCCTACTGTTGTTTCTTACACTGCTTATATGAAGGTCCTTTTTAATGATAACAGAGTGAAGGAGGCTGCTGATGTTTACAAGGAAATGCTTCAATCTGGGTGCTCTCCAACTTGTCATACCTACACTGTCTTAATGGAATACCTCATTGGTTCAGGCAAATGCAAAGAGGCACTTGAGATTTTTGGCAAAATGCAAGATGCTGGAGTACAACCTGATAAAGCGGCCTGCAATATTTTAATTGAGAATTTGTGCAAAGTGGGAGAGACATGGACAATGAACCAAGTCCTTTGGTTTATGAAAGAACATCGCCTTGCCCTTCGTTACCCTGTATTTCTAGAGGCAATCAGAACTTTAAAAATTGCTGGGGTGAGTGATTCCCTCCTCAGGCAAGTTCATCCTCACTTTTCCATTGAATCTGGGAATCAGGAGACAGGTGAGCTTAGAGCAACTGCTGCTGATGCTCCTTCAACAATGGATGAATGGCTTGTACTGATTCTCTTAAAAAAGGAAAATCTTGTTGCCATAGACCACTTACTCGCTGGAAATGAAGGTAAGAATATAAAATTGAATTCTGCAATCATCTCAACCATCATTGAGGTAAATTGTGGACTTTGCAGACCAGATGGTGCTTTGCTGGCTTTTGAATATAGTGTGAAAATGGGTATCATCGTTGAGAGAAATGCCTATCTTTCTTTAATAGGAGCTTTGATCAGATTAAGTTCATTTCCAAAGGTGGTAGAGATTGTTGTGGAGATGATTAGGGCTGGGTATTCTCCTGGAACATACCTAAGTGCACTTCTGATATATAGGCTTGGGCGTGCTAGAAGGACCAATTGTGCTGCAAAAGTCTTTAATTTATTGCCTGATGATCACAAGTGCACTACAACTTACACTGCCTTGATGGGTGTTTACTTCTCTGCTGGTAGTGCTGATAGAGGACTTAAAATTTTTGATACGATGCGAGGGGAAGGGTTTCTTCCTTTCTTGGGAACATACAATGTTCTCTTAGCCGGTCTCCAAAAACTTGGTAGAGTTCGTGAAGCTGAAATGTATAGGAAGGAAAAGAAGAGTCTGCAGAGTGATGGTCCGTCTCAGAATGCTGTCCCTATTGATCAGAAGATCTGTGACTTTCTATTTGCTGGGGATGTGGTATCTTGA

Protein Analysis

589

Amino Acids

66.35

Weight (kDa)

8.95

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017929)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 300
AccII CGCG 1 cut(s) 6
AciI CCGC 3 cut(s) 6, 446, 830
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 4 cut(s) 240, 853, 1177, 1554
AcuI CTGAAG 1 cut(s) 593
AfaI GTAC 3 cut(s) 416, 816, 1098
AfiI CCNNNNNNNGG 3 cut(s) 300, 993, 1595
AgsI TTSAA 9 cut(s) 169, 255, 370, 478, 701, 1022, 1077, 1177, 1253
AjnI CCWGG 3 cut(s) 321, 356, 1384
AjuI GAANNNNNNNTTGG 4 cut(s) 149, 181, 738, 770
AluBI AGCT 5 cut(s) 47, 596, 1048, 1313, 1652
AluI AGCT 5 cut(s) 47, 596, 1048, 1313, 1652
Alw21I GWGCWC 5 cut(s) 330, 598, 713, 1405, 1490
Alw26I GTCTC 4 cut(s) 866, 1031, 1628, 1704
Alw44I GTGCAC 2 cut(s) 1401, 1486
AlwNI CAGNNNCTG 1 cut(s) 289
AoxI GGCC 2 cut(s) 54, 831
ApaLI GTGCAC 2 cut(s) 1401, 1486
ApeKI GCWGC 5 cut(s) 44, 289, 674, 1061, 1448
ApoI RAATTY 4 cut(s) 240, 853, 1177, 1554
ArsI GACNNNNNNTTYG 2 cut(s) 1727, 1759
Asp700I GAANNNNTTC 3 cut(s) 164, 696, 1581
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 4 cut(s) 274, 643, 1437, 1694
AsuHPI GGTGA 3 cut(s) 82, 988, 1055
AvaII GGWCC 4 cut(s) 274, 643, 1437, 1694
AxyI CCTNAGG 1 cut(s) 992
BaeGI GKGCMC 2 cut(s) 1405, 1490
BanII GRGCYC 2 cut(s) 571, 598
Bbv12I GWGCWC 5 cut(s) 330, 598, 713, 1405, 1490
BbvI GCAGC 5 cut(s) 56, 276, 661, 1048, 1435
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 3 cut(s) 323, 358, 1386
BclI TGATCA 4 cut(s) 64, 1317, 1477, 1720
BcoDI GTCTC 4 cut(s) 866, 1031, 1628, 1704
BfaI CTAG 3 cut(s) 546, 944, 1431
BfmI CTRYAG 1 cut(s) 1682
BglII AGATCT 1 cut(s) 1728
BisI GCNGC 6 cut(s) 45, 290, 675, 831, 1062, 1449
BlsI GCNGC 6 cut(s) 46, 291, 676, 832, 1063, 1450
Bme1390I CCNGG 3 cut(s) 323, 358, 1386
Bme18I GGWCC 4 cut(s) 274, 643, 1437, 1694
BmgT120I GGNCC 4 cut(s) 274, 643, 1437, 1694
BmrFI CCNGG 3 cut(s) 323, 358, 1386
BmrI ACTGGG 2 cut(s) 123, 382
BmsI GCATC 6 cut(s) 181, 499, 522, 796, 1057, 1557
BmuI ACTGGG 2 cut(s) 123, 382
BpmI CTGGAG 1 cut(s) 831
Bpu10I CCTNAGC 2 cut(s) 270, 597
BpuEI CTTGAG 1 cut(s) 803
BsaAI YACGTR 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 1628
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 993, 1595
Bse118I RCCGGY 1 cut(s) 1619
Bse1I ACTGG 3 cut(s) 129, 174, 377
Bse21I CCTNAGG 1 cut(s) 992
BseBI CCWGG 3 cut(s) 323, 358, 1386
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 7 cut(s) 57, 93, 337, 562, 1003, 1090, 1759
BseLI CCNNNNNNNGG 3 cut(s) 300, 993, 1595
BseMII CTCAG 4 cut(s) 284, 611, 1006, 1715
BseNI ACTGG 3 cut(s) 129, 174, 377
BseRI GAGGAG 2 cut(s) 599, 980
BseSI GKGCMC 2 cut(s) 1405, 1490
BseXI GCAGC 5 cut(s) 56, 276, 661, 1048, 1435
BseYI CCCAGC 5 cut(s) 380, 551, 971, 1373, 1748
Bsh1236I CGCG 1 cut(s) 6
BshFI GGCC 2 cut(s) 56, 833
BsiHKAI GWGCWC 5 cut(s) 330, 598, 713, 1405, 1490
BsiSI CCGG 1 cut(s) 1620
BslFI GGGAC 2 cut(s) 317, 1697
BslI CCNNNNNNNGG 3 cut(s) 300, 993, 1595
BsmAI GTCTC 4 cut(s) 866, 1031, 1628, 1704
BsmBI CGTCTC 1 cut(s) 1704
BsmFI GGGAC 2 cut(s) 317, 1697
BsmI GAATGC 1 cut(s) 1711
BsnI GGCC 2 cut(s) 56, 833
Bso31I GGTCTC 1 cut(s) 1628
Bsp1286I GDGCHC 6 cut(s) 330, 571, 598, 713, 1405, 1490
Bsp143I GATC 5 cut(s) 64, 1317, 1477, 1720, 1728
Bsp19I CCATGG 1 cut(s) 22
BspACI CCGC 3 cut(s) 6, 446, 830
BspANI GGCC 2 cut(s) 56, 833
BspCNI CTCAG 4 cut(s) 283, 610, 1005, 1714
BspFNI CGCG 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 1686
BspTNI GGTCTC 1 cut(s) 1628
BsrFI RCCGGY 1 cut(s) 1619
BsrI ACTGG 3 cut(s) 129, 174, 377
BssAI RCCGGY 1 cut(s) 1619
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 5 cut(s) 64, 1317, 1477, 1720, 1728
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 3 cut(s) 323, 358, 1386
Bst4CI ACNGT 3 cut(s) 316, 616, 736
Bst6I CTCTTC 1 cut(s) 1670
BstAPI GCANNNNNTGC 1 cut(s) 1061
BstBAI YACGTR 1 cut(s) 414
BstC8I GCNNGC 3 cut(s) 835, 1245, 1428
BstDEI CTNAG 7 cut(s) 270, 597, 992, 1049, 1397, 1615, 1701
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 7 cut(s) 57, 93, 337, 562, 1003, 1090, 1759
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 5 cut(s) 67, 1320, 1480, 1723, 1731
BstMAI GTCTC 4 cut(s) 866, 1031, 1628, 1704
BstMBI GATC 5 cut(s) 64, 1317, 1477, 1720, 1728
BstMWI GCNNNNNNNGC 5 cut(s) 53, 1061, 1067, 1244, 1535
BstNI CCWGG 3 cut(s) 323, 358, 1386
BstSCI CCNGG 3 cut(s) 321, 356, 1384
BstSFI CTRYAG 1 cut(s) 1682
BstSLI GKGCMC 2 cut(s) 1405, 1490
BstUI CGCG 1 cut(s) 6
BstV1I GCAGC 5 cut(s) 56, 276, 661, 1048, 1435
BstX2I RGATCY 1 cut(s) 1728
BstXI CCANNNNNNTGG 1 cut(s) 1634
BstYI RGATCY 1 cut(s) 1728
Bsu36I CCTNAGG 1 cut(s) 992
BsuRI GGCC 2 cut(s) 56, 833
BtgI CCRYGG 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 899
BtsCI GGATG 7 cut(s) 57, 93, 337, 562, 1003, 1090, 1759
BtsI GCAGTG 2 cut(s) 627, 1500
BtsIMutI CAGTG 4 cut(s) 321, 627, 732, 1500
Cac8I GCNNGC 3 cut(s) 835, 1245, 1428
CaiI CAGNNNCTG 1 cut(s) 289
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 1619
Cfr13I GGNCC 4 cut(s) 274, 643, 1437, 1694
Csp6I GTAC 3 cut(s) 415, 815, 1097
CviAII CATG 6 cut(s) 23, 62, 258, 463, 470, 876
CviQI GTAC 3 cut(s) 415, 815, 1097
DdeI CTNAG 7 cut(s) 270, 597, 992, 1049, 1397, 1615, 1701
DpnI GATC 5 cut(s) 66, 1319, 1479, 1722, 1730
DpnII GATC 5 cut(s) 64, 1317, 1477, 1720, 1728
DraI TTTAAA 1 cut(s) 963
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 1670
EarI CTCTTC 1 cut(s) 1670
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 571, 598
Eco31I GGTCTC 1 cut(s) 1628
Eco47I GGWCC 4 cut(s) 274, 643, 1437, 1694
Eco53kI GAGCTC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 593
Eco81I CCTNAGG 1 cut(s) 992
EcoICRI GAGCTC 1 cut(s) 596
EcoO109I RGGNCCY 1 cut(s) 643
EcoRI GAATTC 1 cut(s) 1177
EcoRII CCWGG 3 cut(s) 321, 356, 1384
EcoT14I CCWWGG 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 537
EcoT38I GRGCYC 2 cut(s) 571, 598
ErhI CCWWGG 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 1704
FaeI CATG 6 cut(s) 26, 65, 261, 466, 473, 879
FalI AAGNNNNNCTT 8 cut(s) 149, 181, 345, 377, 765, 797, 1569, 1601
FaqI GGGAC 2 cut(s) 317, 1697
FatI CATG 6 cut(s) 22, 61, 257, 462, 469, 875
FauI CCCGC 1 cut(s) 439
FbaI TGATCA 4 cut(s) 64, 1317, 1477, 1720
Fnu4HI GCNGC 6 cut(s) 45, 290, 675, 831, 1062, 1449
FokI GGATG 6 cut(s) 44, 80, 324, 569, 990, 1097
FriOI GRGCYC 2 cut(s) 571, 598
Fsp4HI GCNGC 6 cut(s) 45, 290, 675, 831, 1062, 1449
FspBI CTAG 3 cut(s) 546, 944, 1431
GlaI GCGC 1 cut(s) 5
GluI GCNGC 6 cut(s) 45, 290, 675, 831, 1062, 1449
GsaI CCCAGC 5 cut(s) 384, 555, 975, 1377, 1752
GsuI CTGGAG 1 cut(s) 831
HaeIII GGCC 2 cut(s) 56, 833
HapII CCGG 1 cut(s) 1620
HhaI GCGC 1 cut(s) 6
Hin1II CATG 6 cut(s) 26, 65, 261, 466, 473, 879
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 9 cut(s) 111, 263, 305, 385, 983, 1022, 1030, 1102, 1678
HpaII CCGG 1 cut(s) 1620
HphI GGTGA 3 cut(s) 82, 988, 1055
Hpy166II GTNNAC 6 cut(s) 417, 685, 1217, 1403, 1488, 1519
Hpy188I TCNGA 6 cut(s) 573, 956, 1322, 1410, 1704, 1725
Hpy188III TCNNGA 5 cut(s) 272, 944, 1034, 1646, 1764
Hpy8I GTNNAC 6 cut(s) 417, 685, 1217, 1403, 1488, 1519
HpyCH4III ACNGT 3 cut(s) 316, 616, 736
HpyCH4IV ACGT 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 1061, 1067, 1244, 1535
HpyF3I CTNAG 7 cut(s) 270, 597, 992, 1049, 1397, 1615, 1701
HpySE526I ACGT 1 cut(s) 413
Hsp92II CATG 6 cut(s) 26, 65, 261, 466, 473, 879
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 4 cut(s) 64, 1317, 1477, 1720
Kzo9I GATC 5 cut(s) 64, 1317, 1477, 1720, 1728
LmnI GCTCC 2 cut(s) 1075, 1310
Lsp1109I GCAGC 5 cut(s) 56, 276, 661, 1048, 1435
LweI GCATC 6 cut(s) 181, 499, 522, 796, 1057, 1557
MaeI CTAG 3 cut(s) 546, 944, 1431
MaeII ACGT 1 cut(s) 413
MaeIII GTNAC 2 cut(s) 929, 1733
MalI GATC 5 cut(s) 66, 1319, 1479, 1722, 1730
MboI GATC 5 cut(s) 64, 1317, 1477, 1720, 1728
MboII GAAGA 4 cut(s) 200, 1577, 1687, 1738
MfeI CAATTG 1 cut(s) 1441
MflI RGATCY 1 cut(s) 1728
MhlI GDGCHC 6 cut(s) 330, 571, 598, 713, 1405, 1490
MlyI GAGTC 2 cut(s) 299, 1687
MmeI TCCRAC 1 cut(s) 740
Mph1103I ATGCAT 1 cut(s) 537
MroXI GAANNNNTTC 3 cut(s) 164, 696, 1581
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 1 cut(s) 1620
MspR9I CCNGG 3 cut(s) 323, 358, 1386
MunI CAATTG 1 cut(s) 1441
Mva1269I GAATGC 1 cut(s) 1711
MvaI CCWGG 3 cut(s) 323, 358, 1386
MvnI CGCG 1 cut(s) 6
MwoI GCNNNNNNNGC 5 cut(s) 53, 1061, 1067, 1244, 1535
NcoI CCATGG 1 cut(s) 22
NdeII GATC 5 cut(s) 64, 1317, 1477, 1720, 1728
NlaIII CATG 6 cut(s) 26, 65, 261, 466, 473, 879
NmuCI GTSAC 1 cut(s) 1733
NsiI ATGCAT 1 cut(s) 537
PctI GAATGC 1 cut(s) 1711
PdmI GAANNNNTTC 3 cut(s) 164, 696, 1581
PfeI GAWTC 7 cut(s) 111, 263, 385, 983, 1022, 1030, 1102
PflMI CCANNNNNTGG 1 cut(s) 300
PfoI TCCNGGA 1 cut(s) 1384
PkrI GCNGC 6 cut(s) 46, 291, 676, 832, 1063, 1450
PleI GAGTC 2 cut(s) 299, 1686
PpsI GAGTC 2 cut(s) 299, 1686
Ppu21I YACGTR 1 cut(s) 414
PpuMI RGGWCCY 1 cut(s) 643
Psp124BI GAGCTC 1 cut(s) 598
Psp5II RGGWCCY 1 cut(s) 643
Psp6I CCWGG 3 cut(s) 321, 356, 1384
PspFI CCCAGC 5 cut(s) 380, 551, 971, 1373, 1748
PspGI CCWGG 3 cut(s) 321, 356, 1384
PspPI GGNCC 4 cut(s) 274, 643, 1437, 1694
PspPPI RGGWCCY 1 cut(s) 643
PstI CTGCAG 1 cut(s) 1686
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 1 cut(s) 1728
RsaI GTAC 3 cut(s) 416, 816, 1098
RsaNI GTAC 3 cut(s) 415, 815, 1097
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 1 cut(s) 598
SatI GCNGC 6 cut(s) 45, 290, 675, 831, 1062, 1449
Sau3AI GATC 5 cut(s) 64, 1317, 1477, 1720, 1728
Sau96I GGNCC 4 cut(s) 274, 643, 1437, 1694
SchI GAGTC 2 cut(s) 299, 1687
ScrFI CCNGG 3 cut(s) 323, 358, 1386
SduI GDGCHC 6 cut(s) 330, 571, 598, 713, 1405, 1490
SfaNI GCATC 6 cut(s) 181, 499, 522, 796, 1057, 1557
SfcI CTRYAG 1 cut(s) 1682
SinI GGWCC 4 cut(s) 274, 643, 1437, 1694
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
SsiI CCGC 3 cut(s) 6, 446, 830
SspI AATATT 2 cut(s) 251, 841
SspMI CTAG 3 cut(s) 546, 944, 1431
SstI GAGCTC 1 cut(s) 598
StyD4I CCNGG 3 cut(s) 321, 356, 1384
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 3 cut(s) 316, 616, 736
TaiI ACGT 1 cut(s) 416
TaqI TCGA 1 cut(s) 388
TatI WGTACW 2 cut(s) 814, 1096
TauI GCSGC 1 cut(s) 833
TfiI GAWTC 7 cut(s) 111, 263, 385, 983, 1022, 1030, 1102
TscAI CASTG 4 cut(s) 321, 634, 739, 1507
TseFI GTSAC 1 cut(s) 1733
TseI GCWGC 5 cut(s) 44, 289, 674, 1061, 1448
Tsp45I GTSAC 1 cut(s) 1733
TspDTI ATGAA 7 cut(s) 653, 899, 920, 992, 1101, 1170, 1320
TspGWI ACGGA 1 cut(s) 1686
TspRI CASTG 4 cut(s) 321, 634, 739, 1507
Van91I CCANNNNNTGG 1 cut(s) 300
VneI GTGCAC 2 cut(s) 1401, 1486
VpaK11BI GGWCC 4 cut(s) 274, 643, 1437, 1694
XapI RAATTY 4 cut(s) 240, 853, 1177, 1554
XbaI TCTAGA 1 cut(s) 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 1145
XmnI GAANNNNTTC 3 cut(s) 164, 696, 1581
XspI CTAG 3 cut(s) 546, 944, 1431
Zsp2I ATGCAT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.