Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0017714

Physical Location & Seq

Genomic Coordinates Reverse (-)

17700888 .. 17701899

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22492.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTCGTGCAATTTCGGTCAACCAGGATCTGGTTCGAATCCACCACCGGCTGGATCGGGTGCACCAAAAACCACCTGCTCGCGGAGGCAAGAAGTGGTGCATAGCCAAGCAGCAGGCTCGCGTACAGGACTTACAAGCAAACTTAAACTTCGTGTGTGATAACCAGGGCGTGGACTGCGGGCCCATACAGCCCGGTGGTGCTTGCTTCGATGAAGATGTCCGGGCTCGAGCGTCCTACGCCATGAATTCTTACTATCAGGTCAAGGGTGGTAACGATTTCAACTGCGATTTCTCTGGAACCGGACTCATCACCATCACCGACCCAAGTCACGGCGGATGCAAATATATCGAGGCTGGTGGCCAAGGACCCTCTGGACCAACACCAACCCAACCAAGCAAACCTGCTCAACCATCTAAGGGAGGGTGGTGCGTACCAAAACCAGGGGTAACCGACGCAGTTTTGCAGCAAAACATGGACTGGTTGTGCGGCACCCATAAGGTGCATTGTAACAACGTAATGCCTGGTGCTAAATGCTATGCCGAGTCAATCCTGCCACGGGCATCCTACCTCATGGATGTTTACTACAAGAAGTACGGCCGCCACGATTACGACTGTGATTTCAATGGAAGCGCCCAAATCACCAACATCAATCCGAGCTGGGGCAGTTGTATCTACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

228

Amino Acids

24.85

Weight (kDa)

8.41

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	32 - 102	8.7e-19	X8 domain
X8	PF07983	143 - 212	3.8e-15	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22492 FvH4_7g22493
rosa_chinensis	RchiOBHm_Chr1g0367111
rosa_laevigata	RLG00000027297
rosa_multiflora	Rmu_co8444521.1_g000001 Rmu_sc0007424.1_g000008 Rmu_sc0007844.1_g000001
rosa_rugosa	Rorug01G0334600
rosa_samantha	Rh1AG341400 Rh1BG301900 Rh1CG318300 Rh1DG334400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	85
Acc36I	ACCTGC	2 cut(s)	85, 412
AccB1I	GGYRCC	1 cut(s)	491
AccB7I	CCANNNNNTGG	3 cut(s)	31, 52, 172
AccII	CGCG	2 cut(s)	84, 123
AciI	CCGC	5 cut(s)	84, 180, 336, 489, 601
AclWI	GGATC	2 cut(s)	36, 63
AcoI	YGGCCR	2 cut(s)	361, 598
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	3 cut(s)	126, 435, 596
AfiI	CCNNNNNNNGG	9 cut(s)	31, 52, 83, 172, 332, 419, 443, 559, 662
AgsI	TTSAA	2 cut(s)	283, 625
AjnI	CCWGG	4 cut(s)	24, 165, 442, 523
AluBI	AGCT	1 cut(s)	660
AluI	AGCT	1 cut(s)	660
Alw21I	GWGCWC	1 cut(s)	66
Alw44I	GTGCAC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	36, 63
AlwNI	CAGNNNCTG	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	3 cut(s)	182, 361, 598
ApaI	GGGCCC	1 cut(s)	186
ApaLI	GTGCAC	1 cut(s)	62
ApeKI	GCWGC	2 cut(s)	112, 466
ApoI	RAATTY	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	4 cut(s)	182, 183, 368, 377
AsuC2I	CCSGG	2 cut(s)	195, 224
AsuHPI	GGTGA	3 cut(s)	304, 310, 634
AsuII	TTCGAA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	2 cut(s)	368, 377
BaeGI	GKGCMC	2 cut(s)	66, 186
BalI	TGGCCA	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	491
BanII	GRGCYC	2 cut(s)	186, 229
BauI	CACGAG	1 cut(s)	6
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	124, 478
BccI	CCATC	2 cut(s)	323, 421
BceAI	ACGGC	2 cut(s)	349, 613
BcgI	CGANNNNNNTGC	4 cut(s)	101, 135, 331, 365
BciT130I	CCWGG	4 cut(s)	26, 167, 444, 525
BcnI	CCSGG	2 cut(s)	195, 224
BfoI	RGCGCY	1 cut(s)	636
BfuAI	ACCTGC	2 cut(s)	85, 412
BisI	GCNGC	4 cut(s)	113, 467, 490, 601
BlsI	GCNGC	4 cut(s)	114, 468, 491, 602
Bme1390I	CCNGG	6 cut(s)	26, 167, 195, 224, 444, 525
Bme18I	GGWCC	2 cut(s)	368, 377
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	4 cut(s)	182, 183, 368, 377
BmiI	GGNNCC	4 cut(s)	184, 301, 370, 493
BmrFI	CCNGG	6 cut(s)	26, 167, 195, 224, 444, 525
BmsI	GCATC	2 cut(s)	329, 572
BoxI	GACNNNNGTC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	37
BpuMI	CCSGG	2 cut(s)	195, 224
BsaJI	CCNNGG	4 cut(s)	166, 364, 443, 557
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	9 cut(s)	31, 52, 83, 172, 332, 419, 443, 559, 662
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	485
BseBI	CCWGG	4 cut(s)	26, 167, 444, 525
BseDI	CCNNGG	4 cut(s)	166, 364, 443, 557
BseGI	GGATG	3 cut(s)	344, 563, 583
BseLI	CCNNNNNNNGG	9 cut(s)	31, 52, 83, 172, 332, 419, 443, 559, 662
BseNI	ACTGG	1 cut(s)	485
BseSI	GKGCMC	2 cut(s)	66, 186
BseX3I	CGGCCG	1 cut(s)	598
BseXI	GCAGC	2 cut(s)	124, 478
BseYI	CCCAGC	1 cut(s)	660
Bsh1236I	CGCG	2 cut(s)	84, 123
Bsh1285I	CGRYCG	1 cut(s)	601
BshFI	GGCC	3 cut(s)	184, 363, 600
BshNI	GGYRCC	1 cut(s)	491
BsiEI	CGRYCG	1 cut(s)	601
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	4 cut(s)	49, 195, 223, 303
BslI	CCNNNNNNNGG	9 cut(s)	31, 52, 83, 172, 332, 419, 443, 559, 662
BsnI	GGCC	3 cut(s)	184, 363, 600
BsoBI	CYCGRG	1 cut(s)	228
Bsp119I	TTCGAA	1 cut(s)	37
Bsp120I	GGGCCC	1 cut(s)	182
Bsp1286I	GDGCHC	3 cut(s)	66, 186, 229
Bsp143I	GATC	2 cut(s)	28, 55
BspACI	CCGC	5 cut(s)	84, 180, 336, 489, 601
BspANI	GGCC	3 cut(s)	184, 363, 600
BspFNI	CGCG	2 cut(s)	84, 123
BspLI	GGNNCC	4 cut(s)	184, 301, 370, 493
BspMI	ACCTGC	2 cut(s)	85, 412
BspPI	GGATC	2 cut(s)	36, 63
BspT104I	TTCGAA	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	485
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	4 cut(s)	166, 364, 443, 557
BssMI	GATC	2 cut(s)	28, 55
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	364
Bst2BI	CACGAG	1 cut(s)	6
Bst2UI	CCWGG	4 cut(s)	26, 167, 444, 525
Bst4CI	ACNGT	1 cut(s)	617
BstBI	TTCGAA	1 cut(s)	37
BstC8I	GCNNGC	5 cut(s)	82, 117, 121, 182, 205
BstDEI	CTNAG	1 cut(s)	417
BstDSI	CCRYGG	1 cut(s)	557
BstEII	GGTNACC	1 cut(s)	448
BstF5I	GGATG	3 cut(s)	344, 563, 583
BstFNI	CGCG	2 cut(s)	84, 123
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	2 cut(s)	31, 58
BstMBI	GATC	2 cut(s)	28, 55
BstMCI	CGRYCG	1 cut(s)	601
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 190, 239
BstNI	CCWGG	4 cut(s)	26, 167, 444, 525
BstPAI	GACNNNNGTC	1 cut(s)	327
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	6 cut(s)	24, 165, 193, 222, 442, 523
BstSLI	GKGCMC	2 cut(s)	66, 186
BstUI	CGCG	2 cut(s)	84, 123
BstV1I	GCAGC	2 cut(s)	124, 478
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BstZI	CGGCCG	1 cut(s)	598
BsuRI	GGCC	3 cut(s)	184, 363, 600
BtgI	CCRYGG	1 cut(s)	557
BtsCI	GGATG	3 cut(s)	344, 563, 583
BveI	ACCTGC	2 cut(s)	85, 412
Cac8I	GCNNGC	5 cut(s)	82, 117, 121, 182, 205
CaiI	CAGNNNCTG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	635
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	4 cut(s)	182, 183, 368, 377
CseI	GACGC	2 cut(s)	222, 464
Csp6I	GTAC	3 cut(s)	125, 434, 595
CviAII	CATG	3 cut(s)	244, 475, 574
CviQI	GTAC	3 cut(s)	125, 434, 595
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	30, 57
DpnII	GATC	2 cut(s)	28, 55
EaeI	YGGCCR	2 cut(s)	361, 598
EagI	CGGCCG	1 cut(s)	598
EciI	GGCGGA	1 cut(s)	351
EclXI	CGGCCG	1 cut(s)	598
Eco130I	CCWWGG	1 cut(s)	364
Eco24I	GRGCYC	2 cut(s)	186, 229
Eco47I	GGWCC	2 cut(s)	368, 377
Eco52I	CGGCCG	1 cut(s)	598
Eco88I	CYCGRG	1 cut(s)	228
Eco91I	GGTNACC	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	368
EcoO65I	GGTNACC	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	4 cut(s)	24, 165, 442, 523
EcoT14I	CCWWGG	1 cut(s)	364
EcoT38I	GRGCYC	2 cut(s)	186, 229
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	3 cut(s)	247, 478, 577
FaiI	YATR	8 cut(s)	104, 188, 245, 348, 476, 498, 540, 575
FatI	CATG	3 cut(s)	243, 474, 573
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	4 cut(s)	113, 467, 490, 601
FokI	GGATG	3 cut(s)	351, 550, 590
FriOI	GRGCYC	2 cut(s)	186, 229
Fsp4HI	GCNGC	4 cut(s)	113, 467, 490, 601
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	4 cut(s)	113, 467, 490, 601
GsaI	CCCAGC	1 cut(s)	664
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	3 cut(s)	184, 363, 600
HapII	CCGG	4 cut(s)	49, 195, 223, 303
HgaI	GACGC	2 cut(s)	222, 464
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	3 cut(s)	247, 478, 577
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	3 cut(s)	39, 306, 545
HpaII	CCGG	4 cut(s)	49, 195, 223, 303
HphI	GGTGA	3 cut(s)	304, 310, 634
Hpy166II	GTNNAC	4 cut(s)	22, 64, 175, 583
Hpy188I	TCNGA	1 cut(s)	657
Hpy188III	TCNNGA	2 cut(s)	297, 375
Hpy8I	GTNNAC	4 cut(s)	22, 64, 175, 583
Hpy99I	CGWCG	1 cut(s)	458
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	6 cut(s)	11, 64, 102, 342, 466, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 190, 239
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	3 cut(s)	247, 478, 577
HspAI	GCGC	1 cut(s)	633
Kzo9I	GATC	2 cut(s)	28, 55
Lsp1109I	GCAGC	2 cut(s)	124, 478
LweI	GCATC	2 cut(s)	329, 572
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	4 cut(s)	272, 329, 448, 509
MalI	GATC	2 cut(s)	30, 57
MboI	GATC	2 cut(s)	28, 55
MboII	GAAGA	1 cut(s)	227
MfeI	CAATTG	1 cut(s)	679
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	3 cut(s)	66, 186, 229
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	3 cut(s)	12, 247, 679
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	2 cut(s)	300, 554
MnlI	CCTC	5 cut(s)	80, 346, 382, 416, 581
Mox20I	TGGCCA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	363
MspI	CCGG	4 cut(s)	49, 195, 223, 303
MspR9I	CCNGG	6 cut(s)	26, 167, 195, 224, 444, 525
MunI	CAATTG	1 cut(s)	679
MvaI	CCWGG	4 cut(s)	26, 167, 444, 525
MvnI	CGCG	2 cut(s)	84, 123
MwoI	GCNNNNNNNGC	3 cut(s)	177, 190, 239
NciI	CCSGG	2 cut(s)	195, 224
NdeII	GATC	2 cut(s)	28, 55
NlaIII	CATG	3 cut(s)	247, 478, 577
NlaIV	GGNNCC	4 cut(s)	184, 301, 370, 493
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	329
NspV	TTCGAA	1 cut(s)	37
PaeR7I	CTCGAG	1 cut(s)	228
PaqCI	CACCTGC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	603
PfeI	GAWTC	1 cut(s)	39
PflMI	CCANNNNNTGG	3 cut(s)	31, 52, 172
PkrI	GCNGC	4 cut(s)	114, 468, 491, 602
PleI	GAGTC	2 cut(s)	300, 553
PpsI	GAGTC	2 cut(s)	300, 553
PpuMI	RGGWCCY	1 cut(s)	368
PshAI	GACNNNNGTC	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	4 cut(s)	24, 165, 442, 523
PspEI	GGTNACC	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	660
PspGI	CCWGG	4 cut(s)	24, 165, 442, 523
PspN4I	GGNNCC	4 cut(s)	184, 301, 370, 493
PspOMI	GGGCCC	1 cut(s)	182
PspPI	GGNCC	4 cut(s)	182, 183, 368, 377
PspPPI	RGGWCCY	1 cut(s)	368
PspXI	VCTCGAGB	1 cut(s)	228
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	3 cut(s)	126, 435, 596
RsaNI	GTAC	3 cut(s)	125, 434, 595
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	4 cut(s)	113, 467, 490, 601
Sau3AI	GATC	2 cut(s)	28, 55
Sau96I	GGNCC	4 cut(s)	182, 183, 368, 377
SchI	GAGTC	2 cut(s)	300, 554
ScrFI	CCNGG	6 cut(s)	26, 167, 195, 224, 444, 525
SduI	GDGCHC	3 cut(s)	66, 186, 229
SetI	ASST	7 cut(s)	79, 264, 406, 504, 519, 573, 662
SfaNI	GCATC	2 cut(s)	329, 572
Sfr274I	CTCGAG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	37
SinI	GGWCC	2 cut(s)	368, 377
SlaI	CTCGAG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	3 cut(s)	12, 247, 679
SsiI	CCGC	5 cut(s)	84, 180, 336, 489, 601
StyD4I	CCNGG	6 cut(s)	24, 165, 193, 222, 442, 523
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	617
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	4 cut(s)	37, 210, 229, 351
TaqII	GACCGA	1 cut(s)	7
TasI	AATT	3 cut(s)	12, 247, 679
TauI	GCSGC	2 cut(s)	492, 603
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	2 cut(s)	112, 466
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	228, 260
Van91I	CCANNNNNTGG	3 cut(s)	31, 52, 172
VneI	GTGCAC	1 cut(s)	62
VpaK11BI	GGWCC	2 cut(s)	368, 377
XapI	RAATTY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XhoI	CTCGAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.