Rh1CG318300

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
59375873 .. 59378077
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG318300.1

Sequence Viewer

Length: 1146 bp
ATGGAAGCAATGGCCCCTACCAAGCTCGGCTTCTGCCTTCTCCTCCTTCTCCGGCTGGCCTCCACAATTAATGCCGACGACTTTTGCGTAGCAAAACCAGGCGTTAGCGAACAAACTTTGCAAGCAAACATAAACTATGCGTGCGCTCAACAAGGCGTAGATTGTTCGCCAATTCAACCAGGTGGTTCTTGCTTCACCAGCGATCTCATCACTCGGGCCTCCTACGCTATGACCACTTACTACAATGTCTTCCGTTCACAGGGTGGTACTTGTGATTTCACTCAATCGGCACAACTCACCTCCACTGATCCAAGTAAAGGCTCGTGCAGTTTTGGTCCGAAAGGATCTGGTTCGTCGAATCCACCGGCAGCTGGATCAGGTGCACCAACTACACCTGCTCCAGGAGGAGGCAAAGGCAAAGGCCGAGGCATGAAGTGGTGCGTAGCCAAGCACCAGGCTAGCCAACAAGACTTGCAAGCGAACTTAAACTACGTGTGTGCTAATCAGGGCGTGGACTGCAGCCCGATACAGCCCGGTGGTGCTTGCTATGATGCTGATATCAGGGCACGGGCGTCCTACGCCATGAATTCTTACTATCAGCTTAAGGGTCGTAGAGACTTCAACTGTGATTTCTCTGGAACCGGACTCATCACAATCAGCGACCCAAGTCACGGAGGATGCAACTATAACCAGGCTGGTGGCCATGGACCATCTGGACCAACACCAACCCAACCAAGCACACCTGCTCAACCATCTACCGGAGGTAATGGACAGTGGTGCGTACCAAAACAAGAGGCAACCGACCAGGTTTTGCAGCAAAACATAAACTGGTTGTGCGGCACCCATAAGGTGAATTGTGACGACGTATTGGGTGGTGGTAAATGCTGGGCGCGAGCAATCCGGCCACGGGCATCCTACCTCATGGATCTTTACTACAAGCAGAACGGCCGCAACAATTACGACTGTGATTTCGTTGGAACCGCTCAAGTCACCAACATCAACCCAAGTATGTTGAGATGTTTACCTTTCGTTGTGGAGAGAAAAATTCTAGTTTATTTTACCTTCAGTTTTTATAATTTCCACGTTCCTTTTTTTTTTTTTCTTTTTCAGGCTGGGGCAGTTGTGTTTACGGCTCTTGAAAATTGA

Protein Analysis

381

Amino Acids

40.84

Weight (kDa)

8.2

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 28 - 97 3.3e-16 X8 domain
X8 PF07983 145 - 215 1.8e-20 X8 domain
X8 PF07983 258 - 328 4.6e-14 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017714)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1074
AarI CACCTGC 2 cut(s) 403, 751
Acc36I ACCTGC 2 cut(s) 403, 751
AccB1I GGYRCC 1 cut(s) 839
AccBSI CCGCTC 1 cut(s) 983
AccII CGCG 1 cut(s) 892
AciI CCGC 3 cut(s) 837, 949, 981
AclWI GGATC 4 cut(s) 302, 352, 382, 933
AcoI YGGCCR 3 cut(s) 700, 902, 946
AcsI RAATTY 2 cut(s) 586, 1044
AcuI CTGAAG 1 cut(s) 1048
AcyI GRCGYC 1 cut(s) 572
AdeI CACNNNGTG 1 cut(s) 263
AfaI GTAC 2 cut(s) 268, 783
AfiI CCNNNNNNNGG 8 cut(s) 259, 317, 371, 401, 407, 671, 758, 907
AflII CTTAAG 1 cut(s) 602
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 3 cut(s) 176, 622, 1139
AjnI CCWGG 6 cut(s) 97, 178, 400, 453, 690, 804
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 3 cut(s) 25, 371, 601
AluI AGCT 3 cut(s) 25, 371, 601
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 609
Alw44I GTGCAC 1 cut(s) 381
AlwI GGATC 4 cut(s) 302, 352, 382, 933
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 7 cut(s) 12, 57, 216, 421, 700, 902, 946
ApaLI GTGCAC 1 cut(s) 381
ApeKI GCWGC 3 cut(s) 368, 519, 814
ApoI RAATTY 2 cut(s) 586, 1044
ArsI GACNNNNNNTTYG 2 cut(s) 953, 985
AseI ATTAAT 1 cut(s) 69
AspLEI GCGC 2 cut(s) 146, 892
AspS9I GGNCC 5 cut(s) 13, 216, 335, 707, 716
AsuC2I CCSGG 1 cut(s) 534
AsuHPI GGTGA 4 cut(s) 187, 289, 862, 982
AsuNHI GCTAGC 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 3 cut(s) 335, 707, 716
BaeGI GKGCMC 2 cut(s) 385, 568
BalI TGGCCA 1 cut(s) 702
BanI GGYRCC 1 cut(s) 839
BauI CACGAG 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 3 cut(s) 380, 531, 826
BccI CCATC 2 cut(s) 718, 760
BceAI ACGGC 1 cut(s) 961
BciT130I CCWGG 6 cut(s) 99, 180, 402, 455, 692, 806
BcnI CCSGG 1 cut(s) 534
BcoDI GTCTC 1 cut(s) 609
BfaI CTAG 2 cut(s) 459, 1049
BfmI CTRYAG 1 cut(s) 517
BfrI CTTAAG 1 cut(s) 602
BfuAI ACCTGC 2 cut(s) 403, 751
BisI GCNGC 5 cut(s) 369, 520, 815, 838, 949
BlsI GCNGC 5 cut(s) 370, 521, 816, 839, 950
Bme1390I CCNGG 7 cut(s) 99, 180, 402, 455, 534, 692, 806
Bme18I GGWCC 3 cut(s) 335, 707, 716
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 5 cut(s) 13, 216, 335, 707, 716
BmiI GGNNCC 4 cut(s) 15, 640, 841, 979
BmrFI CCNGG 7 cut(s) 99, 180, 402, 455, 534, 692, 806
BmsI GCATC 3 cut(s) 541, 668, 920
BmtI GCTAGC 1 cut(s) 462
BoxI GACNNNNGTC 1 cut(s) 666
BpiI GAAGAC 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 969
BpuMI CCSGG 1 cut(s) 534
BsaAI YACGTR 1 cut(s) 493
BsaHI GRCGYC 1 cut(s) 572
BsaJI CCNNGG 3 cut(s) 424, 703, 905
BsaWI WCCGGW 2 cut(s) 641, 758
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bsc4I CCNNNNNNNGG 8 cut(s) 259, 317, 371, 401, 407, 671, 758, 907
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 833
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 6 cut(s) 99, 180, 402, 455, 692, 806
BseDI CCNNGG 3 cut(s) 424, 703, 905
BseGI GGATG 2 cut(s) 683, 911
BseLI CCNNNNNNNGG 8 cut(s) 259, 317, 371, 401, 407, 671, 758, 907
BseMI GCAATG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 833
BseRI GAGGAG 2 cut(s) 32, 420
BseSI GKGCMC 2 cut(s) 385, 568
BseX3I CGGCCG 1 cut(s) 946
BseXI GCAGC 3 cut(s) 380, 531, 826
BseYI CCCAGC 2 cut(s) 885, 1112
BsgI GTGCAG 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 892
Bsh1285I CGRYCG 1 cut(s) 949
BshFI GGCC 7 cut(s) 14, 59, 218, 423, 702, 904, 948
BshNI GGYRCC 1 cut(s) 839
BsiEI CGRYCG 1 cut(s) 949
BsiHKAI GWGCWC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 6 cut(s) 52, 365, 534, 642, 759, 901
BslI CCNNNNNNNGG 8 cut(s) 259, 317, 371, 401, 407, 671, 758, 907
BsmAI GTCTC 1 cut(s) 609
BsnI GGCC 7 cut(s) 14, 59, 218, 423, 702, 904, 948
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 385, 568
Bsp143I GATC 5 cut(s) 202, 307, 344, 374, 925
Bsp19I CCATGG 1 cut(s) 703
BspACI CCGC 3 cut(s) 837, 949, 981
BspANI GGCC 7 cut(s) 14, 59, 218, 423, 702, 904, 948
BspFNI CGCG 1 cut(s) 892
BspLI GGNNCC 4 cut(s) 15, 640, 841, 979
BspMAI CTGCAG 1 cut(s) 521
BspMI ACCTGC 2 cut(s) 403, 751
BspOI GCTAGC 1 cut(s) 462
BspPI GGATC 4 cut(s) 302, 352, 382, 933
BspT107I GGYRCC 1 cut(s) 839
BspTI CTTAAG 1 cut(s) 602
BsrBI CCGCTC 1 cut(s) 983
BsrDI GCAATG 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 833
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 3 cut(s) 424, 703, 905
BssMI GATC 5 cut(s) 202, 307, 344, 374, 925
BssNI GRCGYC 1 cut(s) 572
BssSI CACGAG 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 703
Bst2BI CACGAG 1 cut(s) 322
Bst2UI CCWGG 6 cut(s) 99, 180, 402, 455, 692, 806
Bst4CI ACNGT 3 cut(s) 626, 774, 965
BstACI GRCGYC 1 cut(s) 572
BstAFI CTTAAG 1 cut(s) 602
BstBAI YACGTR 1 cut(s) 493
BstC8I GCNNGC 7 cut(s) 57, 123, 142, 460, 477, 544, 894
BstDSI CCRYGG 2 cut(s) 703, 905
BstENI CCTNNNNNAGG 1 cut(s) 399
BstF5I GGATG 2 cut(s) 683, 911
BstFNI CGCG 1 cut(s) 892
BstHHI GCGC 2 cut(s) 146, 892
BstKTI GATC 5 cut(s) 205, 310, 347, 377, 928
BstMAI GTCTC 1 cut(s) 609
BstMBI GATC 5 cut(s) 202, 307, 344, 374, 925
BstMCI CGRYCG 1 cut(s) 949
BstMWI GCNNNNNNNGC 4 cut(s) 198, 224, 516, 578
BstNI CCWGG 6 cut(s) 99, 180, 402, 455, 692, 806
BstPAI GACNNNNGTC 1 cut(s) 666
BstSCI CCNGG 7 cut(s) 97, 178, 400, 453, 532, 690, 804
BstSFI CTRYAG 1 cut(s) 517
BstSLI GKGCMC 2 cut(s) 385, 568
BstUI CGCG 1 cut(s) 892
BstV1I GCAGC 3 cut(s) 380, 531, 826
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 2 cut(s) 344, 925
BstXI CCANNNNNNTGG 1 cut(s) 698
BstYI RGATCY 2 cut(s) 344, 925
BstZI CGGCCG 1 cut(s) 946
BsuRI GGCC 7 cut(s) 14, 59, 218, 423, 702, 904, 948
BtgI CCRYGG 2 cut(s) 703, 905
BtsCI GGATG 2 cut(s) 683, 911
BtsIMutI CAGTG 2 cut(s) 303, 779
BveI ACCTGC 2 cut(s) 403, 751
Cac8I GCNNGC 7 cut(s) 57, 123, 142, 460, 477, 544, 894
CfoI GCGC 2 cut(s) 146, 892
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 5 cut(s) 13, 216, 335, 707, 716
CseI GACGC 1 cut(s) 561
CsiI ACCWGGT 2 cut(s) 178, 804
Csp6I GTAC 2 cut(s) 267, 782
CviAII CATG 4 cut(s) 430, 583, 704, 922
CviQI GTAC 2 cut(s) 267, 782
DpnI GATC 5 cut(s) 204, 309, 346, 376, 927
DpnII GATC 5 cut(s) 202, 307, 344, 374, 925
DraIII CACNNNGTG 1 cut(s) 263
EaeI YGGCCR 3 cut(s) 700, 902, 946
EagI CGGCCG 1 cut(s) 946
EclXI CGGCCG 1 cut(s) 946
Eco130I CCWWGG 1 cut(s) 703
Eco32I GATATC 1 cut(s) 559
Eco47I GGWCC 3 cut(s) 335, 707, 716
Eco52I CGGCCG 1 cut(s) 946
Eco57I CTGAAG 1 cut(s) 1048
Eco88I CYCGRG 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoRI GAATTC 1 cut(s) 586
EcoRII CCWGG 6 cut(s) 97, 178, 400, 453, 690, 804
EcoRV GATATC 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 703
ErhI CCWWGG 1 cut(s) 703
FaeI CATG 4 cut(s) 433, 586, 707, 925
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 4 cut(s) 429, 582, 703, 921
Fnu4HI GCNGC 5 cut(s) 369, 520, 815, 838, 949
FokI GGATG 2 cut(s) 690, 898
Fsp4HI GCNGC 5 cut(s) 369, 520, 815, 838, 949
FspBI CTAG 2 cut(s) 459, 1049
GlaI GCGC 2 cut(s) 145, 891
GluI GCNGC 5 cut(s) 369, 520, 815, 838, 949
GsaI CCCAGC 2 cut(s) 889, 1116
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 7 cut(s) 14, 59, 218, 423, 702, 904, 948
HapII CCGG 6 cut(s) 52, 365, 534, 642, 759, 901
HgaI GACGC 1 cut(s) 561
HhaI GCGC 2 cut(s) 146, 892
Hin1I GRCGYC 1 cut(s) 572
Hin1II CATG 4 cut(s) 433, 586, 707, 925
Hin6I GCGC 2 cut(s) 144, 890
HinP1I GCGC 2 cut(s) 144, 890
HinfI GANTC 2 cut(s) 358, 645
HpaII CCGG 6 cut(s) 52, 365, 534, 642, 759, 901
HphI GGTGA 4 cut(s) 187, 289, 862, 982
Hpy166II GTNNAC 5 cut(s) 257, 383, 514, 1022, 1128
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 3 cut(s) 636, 714, 1136
Hpy8I GTNNAC 5 cut(s) 257, 383, 514, 1022, 1128
Hpy99I CGWCG 3 cut(s) 80, 358, 866
HpyAV CCTTC 3 cut(s) 47, 56, 1072
HpyCH4III ACNGT 3 cut(s) 626, 774, 965
HpyCH4IV ACGT 3 cut(s) 492, 864, 1083
HpyCH4V TGCA 7 cut(s) 121, 327, 383, 475, 519, 681, 814
HpyF10VI GCNNNNNNNGC 4 cut(s) 198, 224, 516, 578
HpySE526I ACGT 3 cut(s) 492, 864, 1083
Hsp92I GRCGYC 1 cut(s) 572
Hsp92II CATG 4 cut(s) 433, 586, 707, 925
HspAI GCGC 2 cut(s) 144, 890
Kzo9I GATC 5 cut(s) 202, 307, 344, 374, 925
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 3 cut(s) 380, 531, 826
LweI GCATC 3 cut(s) 541, 668, 920
MabI ACCWGGT 2 cut(s) 178, 804
MaeI CTAG 2 cut(s) 459, 1049
MaeII ACGT 3 cut(s) 492, 864, 1083
MaeIII GTNAC 3 cut(s) 668, 857, 988
MalI GATC 5 cut(s) 204, 309, 346, 376, 927
MbiI CCGCTC 1 cut(s) 983
MboI GATC 5 cut(s) 202, 307, 344, 374, 925
MboII GAAGA 1 cut(s) 241
MflI RGATCY 2 cut(s) 344, 925
MhlI GDGCHC 2 cut(s) 385, 568
MlsI TGGCCA 1 cut(s) 702
MluCI AATT 8 cut(s) 66, 171, 586, 853, 955, 1044, 1075, 1141
MluNI TGGCCA 1 cut(s) 702
MlyI GAGTC 1 cut(s) 639
MmeI TCCRAC 1 cut(s) 955
Mox20I TGGCCA 1 cut(s) 702
MscI TGGCCA 1 cut(s) 702
MseI TTAA 3 cut(s) 69, 485, 603
Msp20I TGGCCA 1 cut(s) 702
MspA1I CMGCKG 1 cut(s) 371
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 6 cut(s) 52, 365, 534, 642, 759, 901
MspR9I CCNGG 7 cut(s) 99, 180, 402, 455, 534, 692, 806
MvaI CCWGG 6 cut(s) 99, 180, 402, 455, 692, 806
MvnI CGCG 1 cut(s) 892
MwoI GCNNNNNNNGC 4 cut(s) 198, 224, 516, 578
NciI CCSGG 1 cut(s) 534
NcoI CCATGG 1 cut(s) 703
NdeII GATC 5 cut(s) 202, 307, 344, 374, 925
NheI GCTAGC 1 cut(s) 458
NlaIII CATG 4 cut(s) 433, 586, 707, 925
NlaIV GGNNCC 4 cut(s) 15, 640, 841, 979
NmeAIII GCCGAG 2 cut(s) 6, 449
NmuCI GTSAC 3 cut(s) 668, 857, 988
PaqCI CACCTGC 2 cut(s) 403, 751
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 358
PfoI TCCNGGA 1 cut(s) 400
PkrI GCNGC 5 cut(s) 370, 521, 816, 839, 950
PleI GAGTC 1 cut(s) 639
PpsI GAGTC 1 cut(s) 639
Ppu21I YACGTR 1 cut(s) 493
PshAI GACNNNNGTC 1 cut(s) 666
PshBI ATTAAT 1 cut(s) 69
PsiI TTATAA 1 cut(s) 1074
Psp6I CCWGG 6 cut(s) 97, 178, 400, 453, 690, 804
PspFI CCCAGC 2 cut(s) 885, 1112
PspGI CCWGG 6 cut(s) 97, 178, 400, 453, 690, 804
PspN4I GGNNCC 4 cut(s) 15, 640, 841, 979
PspPI GGNCC 5 cut(s) 13, 216, 335, 707, 716
PsrI GAACNNNNNNTAC 2 cut(s) 473, 505
PstI CTGCAG 1 cut(s) 521
PsuI RGATCY 2 cut(s) 344, 925
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 2 cut(s) 268, 783
RsaNI GTAC 2 cut(s) 267, 782
SaqAI TTAA 3 cut(s) 69, 485, 603
SatI GCNGC 5 cut(s) 369, 520, 815, 838, 949
Sau3AI GATC 5 cut(s) 202, 307, 344, 374, 925
Sau96I GGNCC 5 cut(s) 13, 216, 335, 707, 716
SchI GAGTC 1 cut(s) 639
ScrFI CCNGG 7 cut(s) 99, 180, 402, 455, 534, 692, 806
SduI GDGCHC 2 cut(s) 385, 568
SexAI ACCWGGT 2 cut(s) 178, 804
SfaNI GCATC 3 cut(s) 541, 668, 920
SfcI CTRYAG 1 cut(s) 517
SinI GGWCC 3 cut(s) 335, 707, 716
SmlI CTYRAG 2 cut(s) 602, 984
SmoI CTYRAG 2 cut(s) 602, 984
Sse9I AATT 8 cut(s) 66, 171, 586, 853, 955, 1044, 1075, 1141
SsiI CCGC 3 cut(s) 837, 949, 981
SspMI CTAG 2 cut(s) 459, 1049
StyD4I CCNGG 7 cut(s) 97, 178, 400, 453, 532, 690, 804
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 3 cut(s) 626, 774, 965
TaiI ACGT 3 cut(s) 495, 867, 1086
TaqI TCGA 1 cut(s) 356
TasI AATT 8 cut(s) 66, 171, 586, 853, 955, 1044, 1075, 1141
TauI GCSGC 2 cut(s) 840, 951
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 3 cut(s) 69, 485, 603
Tru9I TTAA 3 cut(s) 69, 485, 603
TscAI CASTG 2 cut(s) 310, 779
TseFI GTSAC 3 cut(s) 668, 857, 988
TseI GCWGC 3 cut(s) 368, 519, 814
Tsp45I GTSAC 3 cut(s) 668, 857, 988
TspDTI ATGAA 2 cut(s) 446, 599
TspGWI ACGGA 2 cut(s) 242, 687
TspRI CASTG 2 cut(s) 310, 779
Vha464I CTTAAG 1 cut(s) 602
VneI GTGCAC 1 cut(s) 381
VpaK11BI GGWCC 3 cut(s) 335, 707, 716
VspI ATTAAT 1 cut(s) 69
XagI CCTNNNNNAGG 1 cut(s) 399
XapI RAATTY 2 cut(s) 586, 1044
XcmI CCANNNNNNNNNTGG 1 cut(s) 710
XspI CTAG 2 cut(s) 459, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.