RchiOBHm_Chr1g0367111

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
57495697 .. 57497511
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59160

Sequence Viewer

Length: 1038 bp
ATGATGGAAGCAATGGCCCCTACCAAGCTGGGCTTTTACCTTCTCCTCCTTCTCCGGCTGGCCTCCACAATTAATGCCGACGACTTTTGCGTAGCAAAACCAGGCGTTAGCGAACAAACTTTGCAAGCAAACATAAACTATGCGTGCGCTCAACAAGGCGTAGATTGTTCGCCAATTCAACCAGGCGGTTCTTGCTTCACCAGCGATCTCATCACTCGGGCCTCCTACGCTATGACCACTTACTACAATGTCTTCCGTTCACAGGGTGGTACTTGTGATTTCACTCAATCGGCACAACTCACCTCCACTGATCCAAGTAAAGGCTCGTGCAGTTTTGGTCCGAAAGGATCTGGTTCGTCGAATCCACCGGCAGCTGGATCAGGTGCACCAACTACACCTGCTCCAGGAGGAGGCAAAGGCAAAGGCCGAGGCATGAAGTGGTGCGTAGCCAAGCACCAGGCTAGCCAACAAGACTTGCAAGCGAACTTAAACTACGTGTGTGCTAATCAGGGCGTGGACTGCAGCCCGATACAGCCCGGTGGTGCTTGCTATGATGCTGATATCAGGGCACGGGCGTCCTACGCCATGAATTCTTACTATCAGCTTAAGGGTCGTAGAGACTTCAACTGTGATTTCTCTGGAACCGGACTCATTACAATCAGCGACCCAAGTCACGGAGGATGCAACTATATCCAGGCTGGTGGCCATGGACCATCTGGACCAACACCAACCCAACCAAGCACACCTGCTAAACCATCTACCGGAGGTAATGGACGGTGGTGCGTACCAAAACAAGAGGCAACCGACCAGGTTTTGCAGCAAAACATAAACTGGTTGTGCGGCACCTATAAGGTGAATTGTGACGACGTATTGGGTGGTGGTAAATGCTGGGCGCCAGCAATCCGGCCACGGGCATCCTACCTCATGGATCTTTACTACAAGCAGAACGGCCGCAACAATTACGACTGTGATTTCGTTGGAACCGCTCAAGTCACCAACATCAACCCAAGCTGGGGCAGTTGTGTTTACGGCTCTTGA

Protein Analysis

345

Amino Acids

36.47

Weight (kDa)

8.22

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 29 - 98 2.8e-16 X8 domain
X8 PF07983 146 - 216 1.5e-20 X8 domain
X8 PF07983 260 - 329 9.1e-15 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017714)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 406, 754
Acc36I ACCTGC 2 cut(s) 406, 754
AccB1I GGYRCC 2 cut(s) 842, 892
AccBSI CCGCTC 1 cut(s) 986
AciI CCGC 4 cut(s) 186, 840, 952, 984
AclWI GGATC 4 cut(s) 305, 355, 385, 936
AcoI YGGCCR 3 cut(s) 703, 905, 949
AcsI RAATTY 1 cut(s) 589
AcyI GRCGYC 2 cut(s) 575, 893
AdeI CACNNNGTG 1 cut(s) 266
AfaI GTAC 2 cut(s) 271, 786
AflII CTTAAG 1 cut(s) 605
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 2 cut(s) 179, 625
AjnI CCWGG 6 cut(s) 100, 181, 403, 456, 693, 807
AluBI AGCT 4 cut(s) 28, 374, 604, 1011
AluI AGCT 4 cut(s) 28, 374, 604, 1011
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 612
Alw44I GTGCAC 1 cut(s) 384
AlwI GGATC 4 cut(s) 305, 355, 385, 936
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 7 cut(s) 15, 60, 219, 424, 703, 905, 949
ApaLI GTGCAC 1 cut(s) 384
ApeKI GCWGC 3 cut(s) 371, 522, 817
ApoI RAATTY 1 cut(s) 589
ArsI GACNNNNNNTTYG 2 cut(s) 956, 988
AseI ATTAAT 1 cut(s) 72
AspLEI GCGC 2 cut(s) 149, 895
AspS9I GGNCC 5 cut(s) 16, 219, 338, 710, 719
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 4 cut(s) 190, 292, 865, 985
AsuNHI GCTAGC 1 cut(s) 461
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 3 cut(s) 338, 710, 719
BaeGI GKGCMC 2 cut(s) 388, 571
BalI TGGCCA 1 cut(s) 705
BanI GGYRCC 2 cut(s) 842, 892
BauI CACGAG 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 3 cut(s) 383, 534, 829
BccI CCATC 2 cut(s) 721, 763
BceAI ACGGC 1 cut(s) 964
BciT130I CCWGG 6 cut(s) 102, 183, 405, 458, 695, 809
BcnI CCSGG 1 cut(s) 537
BcoDI GTCTC 1 cut(s) 612
BfaI CTAG 1 cut(s) 462
BfmI CTRYAG 1 cut(s) 520
BfoI RGCGCY 1 cut(s) 896
BfrI CTTAAG 1 cut(s) 605
BfuAI ACCTGC 2 cut(s) 406, 754
BisI GCNGC 5 cut(s) 372, 523, 818, 841, 952
BlsI GCNGC 5 cut(s) 373, 524, 819, 842, 953
Bme1390I CCNGG 7 cut(s) 102, 183, 405, 458, 537, 695, 809
Bme18I GGWCC 3 cut(s) 338, 710, 719
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 5 cut(s) 16, 219, 338, 710, 719
BmiI GGNNCC 5 cut(s) 18, 643, 844, 894, 982
BmrFI CCNGG 7 cut(s) 102, 183, 405, 458, 537, 695, 809
BmsI GCATC 3 cut(s) 544, 671, 923
BmtI GCTAGC 1 cut(s) 465
BoxI GACNNNNGTC 1 cut(s) 669
BpiI GAAGAC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 972
BpuMI CCSGG 1 cut(s) 537
BsaAI YACGTR 1 cut(s) 496
BsaHI GRCGYC 2 cut(s) 575, 893
BsaJI CCNNGG 3 cut(s) 427, 706, 908
BsaWI WCCGGW 2 cut(s) 644, 761
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 836
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 6 cut(s) 102, 183, 405, 458, 695, 809
BseDI CCNNGG 3 cut(s) 427, 706, 908
BseGI GGATG 2 cut(s) 686, 914
BseMI GCAATG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 836
BseRI GAGGAG 2 cut(s) 35, 423
BseSI GKGCMC 2 cut(s) 388, 571
BseX3I CGGCCG 1 cut(s) 949
BseXI GCAGC 3 cut(s) 383, 534, 829
BseYI CCCAGC 3 cut(s) 28, 888, 1011
BsgI GTGCAG 1 cut(s) 349
Bsh1285I CGRYCG 1 cut(s) 952
BshFI GGCC 7 cut(s) 17, 62, 221, 426, 705, 907, 951
BshNI GGYRCC 2 cut(s) 842, 892
BsiEI CGRYCG 1 cut(s) 952
BsiHKAI GWGCWC 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 6 cut(s) 55, 368, 537, 645, 762, 904
BsmAI GTCTC 1 cut(s) 612
BsnI GGCC 7 cut(s) 17, 62, 221, 426, 705, 907, 951
BsoBI CYCGRG 1 cut(s) 216
Bsp1286I GDGCHC 2 cut(s) 388, 571
Bsp143I GATC 5 cut(s) 205, 310, 347, 377, 928
Bsp19I CCATGG 1 cut(s) 706
BspACI CCGC 4 cut(s) 186, 840, 952, 984
BspANI GGCC 7 cut(s) 17, 62, 221, 426, 705, 907, 951
BspLI GGNNCC 5 cut(s) 18, 643, 844, 894, 982
BspMAI CTGCAG 1 cut(s) 524
BspMI ACCTGC 2 cut(s) 406, 754
BspOI GCTAGC 1 cut(s) 465
BspPI GGATC 4 cut(s) 305, 355, 385, 936
BspT107I GGYRCC 2 cut(s) 842, 892
BspTI CTTAAG 1 cut(s) 605
BsrBI CCGCTC 1 cut(s) 986
BsrDI GCAATG 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 1 cut(s) 836
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 3 cut(s) 427, 706, 908
BssMI GATC 5 cut(s) 205, 310, 347, 377, 928
BssNI GRCGYC 2 cut(s) 575, 893
BssSI CACGAG 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 706
Bst2BI CACGAG 1 cut(s) 325
Bst2UI CCWGG 6 cut(s) 102, 183, 405, 458, 695, 809
Bst4CI ACNGT 3 cut(s) 629, 777, 968
BstACI GRCGYC 2 cut(s) 575, 893
BstAFI CTTAAG 1 cut(s) 605
BstBAI YACGTR 1 cut(s) 496
BstC8I GCNNGC 7 cut(s) 60, 126, 145, 463, 480, 547, 897
BstDSI CCRYGG 2 cut(s) 706, 908
BstENI CCTNNNNNAGG 1 cut(s) 402
BstF5I GGATG 2 cut(s) 686, 914
BstH2I RGCGCY 1 cut(s) 896
BstHHI GCGC 2 cut(s) 149, 895
BstKTI GATC 5 cut(s) 208, 313, 350, 380, 931
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 5 cut(s) 205, 310, 347, 377, 928
BstMCI CGRYCG 1 cut(s) 952
BstMWI GCNNNNNNNGC 5 cut(s) 192, 201, 227, 519, 581
BstNI CCWGG 6 cut(s) 102, 183, 405, 458, 695, 809
BstPAI GACNNNNGTC 1 cut(s) 669
BstSCI CCNGG 7 cut(s) 100, 181, 403, 456, 535, 693, 807
BstSFI CTRYAG 1 cut(s) 520
BstSLI GKGCMC 2 cut(s) 388, 571
BstV1I GCAGC 3 cut(s) 383, 534, 829
BstV2I GAAGAC 1 cut(s) 244
BstX2I RGATCY 2 cut(s) 347, 928
BstXI CCANNNNNNTGG 1 cut(s) 701
BstYI RGATCY 2 cut(s) 347, 928
BstZI CGGCCG 1 cut(s) 949
BsuRI GGCC 7 cut(s) 17, 62, 221, 426, 705, 907, 951
BtgI CCRYGG 2 cut(s) 706, 908
BtsCI GGATG 2 cut(s) 686, 914
BtsIMutI CAGTG 1 cut(s) 306
BveI ACCTGC 2 cut(s) 406, 754
Cac8I GCNNGC 7 cut(s) 60, 126, 145, 463, 480, 547, 897
CfoI GCGC 2 cut(s) 149, 895
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 5 cut(s) 16, 219, 338, 710, 719
CseI GACGC 1 cut(s) 564
CsiI ACCWGGT 1 cut(s) 807
Csp6I GTAC 2 cut(s) 270, 785
CviAII CATG 4 cut(s) 433, 586, 707, 925
CviQI GTAC 2 cut(s) 270, 785
DinI GGCGCC 1 cut(s) 894
DpnI GATC 5 cut(s) 207, 312, 349, 379, 930
DpnII GATC 5 cut(s) 205, 310, 347, 377, 928
DraIII CACNNNGTG 1 cut(s) 266
EaeI YGGCCR 3 cut(s) 703, 905, 949
EagI CGGCCG 1 cut(s) 949
EclXI CGGCCG 1 cut(s) 949
Eco130I CCWWGG 1 cut(s) 706
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 3 cut(s) 338, 710, 719
Eco52I CGGCCG 1 cut(s) 949
Eco88I CYCGRG 1 cut(s) 216
EcoNI CCTNNNNNAGG 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 6 cut(s) 100, 181, 403, 456, 693, 807
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 706
EgeI GGCGCC 1 cut(s) 894
EheI GGCGCC 1 cut(s) 894
ErhI CCWWGG 1 cut(s) 706
FaeI CATG 4 cut(s) 436, 589, 710, 928
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FatI CATG 4 cut(s) 432, 585, 706, 924
Fnu4HI GCNGC 5 cut(s) 372, 523, 818, 841, 952
FokI GGATG 2 cut(s) 693, 901
Fsp4HI GCNGC 5 cut(s) 372, 523, 818, 841, 952
FspBI CTAG 1 cut(s) 462
GlaI GCGC 2 cut(s) 148, 894
GluI GCNGC 5 cut(s) 372, 523, 818, 841, 952
GsaI CCCAGC 3 cut(s) 32, 892, 1015
GsuI CTGGAG 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 896
HaeIII GGCC 7 cut(s) 17, 62, 221, 426, 705, 907, 951
HapII CCGG 6 cut(s) 55, 368, 537, 645, 762, 904
HgaI GACGC 1 cut(s) 564
HhaI GCGC 2 cut(s) 149, 895
Hin1I GRCGYC 2 cut(s) 575, 893
Hin1II CATG 4 cut(s) 436, 589, 710, 928
Hin6I GCGC 2 cut(s) 147, 893
HinP1I GCGC 2 cut(s) 147, 893
HinfI GANTC 2 cut(s) 361, 648
HpaII CCGG 6 cut(s) 55, 368, 537, 645, 762, 904
HphI GGTGA 4 cut(s) 190, 292, 865, 985
Hpy166II GTNNAC 4 cut(s) 260, 386, 517, 1027
Hpy188I TCNGA 1 cut(s) 342
Hpy188III TCNNGA 3 cut(s) 639, 717, 1035
Hpy8I GTNNAC 4 cut(s) 260, 386, 517, 1027
Hpy99I CGWCG 3 cut(s) 83, 361, 869
HpyAV CCTTC 2 cut(s) 50, 59
HpyCH4III ACNGT 3 cut(s) 629, 777, 968
HpyCH4IV ACGT 2 cut(s) 495, 867
HpyCH4V TGCA 7 cut(s) 124, 330, 386, 478, 522, 684, 817
HpyF10VI GCNNNNNNNGC 5 cut(s) 192, 201, 227, 519, 581
HpySE526I ACGT 2 cut(s) 495, 867
Hsp92I GRCGYC 2 cut(s) 575, 893
Hsp92II CATG 4 cut(s) 436, 589, 710, 928
HspAI GCGC 2 cut(s) 147, 893
KasI GGCGCC 1 cut(s) 892
Kzo9I GATC 5 cut(s) 205, 310, 347, 377, 928
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 3 cut(s) 383, 534, 829
LweI GCATC 3 cut(s) 544, 671, 923
MabI ACCWGGT 1 cut(s) 807
MaeI CTAG 1 cut(s) 462
MaeII ACGT 2 cut(s) 495, 867
MaeIII GTNAC 3 cut(s) 671, 860, 991
MalI GATC 5 cut(s) 207, 312, 349, 379, 930
MbiI CCGCTC 1 cut(s) 986
MboI GATC 5 cut(s) 205, 310, 347, 377, 928
MboII GAAGA 1 cut(s) 244
MflI RGATCY 2 cut(s) 347, 928
MhlI GDGCHC 2 cut(s) 388, 571
MlsI TGGCCA 1 cut(s) 705
MluCI AATT 5 cut(s) 69, 174, 589, 856, 958
MluNI TGGCCA 1 cut(s) 705
Mly113I GGCGCC 1 cut(s) 893
MlyI GAGTC 1 cut(s) 642
MmeI TCCRAC 1 cut(s) 958
Mox20I TGGCCA 1 cut(s) 705
MscI TGGCCA 1 cut(s) 705
MseI TTAA 3 cut(s) 72, 488, 606
Msp20I TGGCCA 1 cut(s) 705
MspA1I CMGCKG 1 cut(s) 374
MspCI CTTAAG 1 cut(s) 605
MspI CCGG 6 cut(s) 55, 368, 537, 645, 762, 904
MspR9I CCNGG 7 cut(s) 102, 183, 405, 458, 537, 695, 809
MvaI CCWGG 6 cut(s) 102, 183, 405, 458, 695, 809
MwoI GCNNNNNNNGC 5 cut(s) 192, 201, 227, 519, 581
NarI GGCGCC 1 cut(s) 893
NciI CCSGG 1 cut(s) 537
NcoI CCATGG 1 cut(s) 706
NdeII GATC 5 cut(s) 205, 310, 347, 377, 928
NheI GCTAGC 1 cut(s) 461
NlaIII CATG 4 cut(s) 436, 589, 710, 928
NlaIV GGNNCC 5 cut(s) 18, 643, 844, 894, 982
NmeAIII GCCGAG 1 cut(s) 452
NmuCI GTSAC 3 cut(s) 671, 860, 991
PaqCI CACCTGC 2 cut(s) 406, 754
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 361
PfoI TCCNGGA 1 cut(s) 403
PkrI GCNGC 5 cut(s) 373, 524, 819, 842, 953
PleI GAGTC 1 cut(s) 642
PluTI GGCGCC 1 cut(s) 896
PpsI GAGTC 1 cut(s) 642
Ppu21I YACGTR 1 cut(s) 496
PshAI GACNNNNGTC 1 cut(s) 669
PshBI ATTAAT 1 cut(s) 72
Psp6I CCWGG 6 cut(s) 100, 181, 403, 456, 693, 807
PspFI CCCAGC 3 cut(s) 28, 888, 1011
PspGI CCWGG 6 cut(s) 100, 181, 403, 456, 693, 807
PspN4I GGNNCC 5 cut(s) 18, 643, 844, 894, 982
PspPI GGNCC 5 cut(s) 16, 219, 338, 710, 719
PsrI GAACNNNNNNTAC 2 cut(s) 476, 508
PstI CTGCAG 1 cut(s) 524
PsuI RGATCY 2 cut(s) 347, 928
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 271, 786
RsaNI GTAC 2 cut(s) 270, 785
SaqAI TTAA 3 cut(s) 72, 488, 606
SatI GCNGC 5 cut(s) 372, 523, 818, 841, 952
Sau3AI GATC 5 cut(s) 205, 310, 347, 377, 928
Sau96I GGNCC 5 cut(s) 16, 219, 338, 710, 719
SchI GAGTC 1 cut(s) 642
ScrFI CCNGG 7 cut(s) 102, 183, 405, 458, 537, 695, 809
SduI GDGCHC 2 cut(s) 388, 571
SexAI ACCWGGT 1 cut(s) 807
SfaNI GCATC 3 cut(s) 544, 671, 923
SfcI CTRYAG 1 cut(s) 520
SfoI GGCGCC 1 cut(s) 894
SinI GGWCC 3 cut(s) 338, 710, 719
SmlI CTYRAG 2 cut(s) 605, 987
SmoI CTYRAG 2 cut(s) 605, 987
Sse9I AATT 5 cut(s) 69, 174, 589, 856, 958
SsiI CCGC 4 cut(s) 186, 840, 952, 984
SspDI GGCGCC 1 cut(s) 892
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 7 cut(s) 100, 181, 403, 456, 535, 693, 807
StyI CCWWGG 1 cut(s) 706
TaaI ACNGT 3 cut(s) 629, 777, 968
TaiI ACGT 2 cut(s) 498, 870
TaqI TCGA 1 cut(s) 359
TasI AATT 5 cut(s) 69, 174, 589, 856, 958
TauI GCSGC 2 cut(s) 843, 954
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 3 cut(s) 72, 488, 606
Tru9I TTAA 3 cut(s) 72, 488, 606
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 3 cut(s) 671, 860, 991
TseI GCWGC 3 cut(s) 371, 522, 817
Tsp45I GTSAC 3 cut(s) 671, 860, 991
TspDTI ATGAA 2 cut(s) 449, 602
TspGWI ACGGA 2 cut(s) 245, 690
TspRI CASTG 1 cut(s) 313
Vha464I CTTAAG 1 cut(s) 605
VneI GTGCAC 1 cut(s) 384
VpaK11BI GGWCC 3 cut(s) 338, 710, 719
VspI ATTAAT 1 cut(s) 72
XagI CCTNNNNNAGG 1 cut(s) 402
XapI RAATTY 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 713
XspI CTAG 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.