Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0017714

Physical Location & Seq

Genomic Coordinates Reverse (-)

43876022 .. 43878037

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG301900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAAGCAATGGCCCCTACCAAGCTCGGCTTCTGCCTTCTCCTCCTTCTCCGGCTGGCCTCCACAATTAATGCCGACGACTTTTGCGTAGCAAAACCAGGCGTTAGCGAACAAACTTTGCAAGCAAACATAAACTATGCGTGCGCTCAACAAGGCGTAGATTGTTCGCCAATTCAACCAGGTGGTTCTTGCTTCACCAGCGATCTCATCACTCGGGCCTCCTACGCTATGACCACTTACTACAATGTCTTCCGTTCACAGGGTGGTACTTGTGATTTCACTCAATCGGCACAACTCACCTCCACTGATCCAAGTAAAGGCTCGTGCAGTTTTGGTCCGAAAGGATCTGGTTCGTCGAATCCACCGGCAGCTGGATCAGGTGCACCAACTACACCTGCTCCAGGAGGAGGCAAAGGCAAAGGCCGAGGCATGAAGTGGTGCGTAGCCAAGCACCAGGCTAGCCAACAAGACTTGCAAGCGAACTTAAACTACGTGTGTGCTAATCAGGGCGTGGACTGCAGCCCGATACAGCCCGGTGGTGCTTGCTATGATGCTGATATCAGGGCACGGGCGTCCTACGCCATGAATTCTTACTATCAGCTTAAGGGTCGTAGAGACTTCAACTGTGATTTCTCTGGAACCGGACTCATCACAATCAGCGACCCAAGTACGTCAATAAGTTTTTCCCCTCTTTTGTTTTTTTTTTTTTCGGAAAGTACCCAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

242

Amino Acids

25.48

Weight (kDa)

7.39

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	28 - 97	1.5e-16	X8 domain
X8	PF07983	145 - 215	8.1e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22492 FvH4_7g22493
rosa_chinensis	RchiOBHm_Chr1g0367111
rosa_laevigata	RLG00000027297
rosa_multiflora	Rmu_co8444521.1_g000001 Rmu_sc0007424.1_g000008 Rmu_sc0007844.1_g000001
rosa_rugosa	Rorug01G0334600
rosa_samantha	Rh1AG341400 Rh1BG301900 Rh1CG318300 Rh1DG334400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	403
Acc36I	ACCTGC	1 cut(s)	403
AclWI	GGATC	3 cut(s)	302, 352, 382
AcsI	RAATTY	1 cut(s)	586
AcyI	GRCGYC	1 cut(s)	572
AdeI	CACNNNGTG	1 cut(s)	263
AfaI	GTAC	3 cut(s)	268, 670, 718
AfiI	CCNNNNNNNGG	5 cut(s)	259, 317, 371, 401, 407
AflII	CTTAAG	1 cut(s)	602
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	2 cut(s)	176, 622
AjnI	CCWGG	4 cut(s)	97, 178, 400, 453
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	4 cut(s)	25, 371, 601, 724
AluI	AGCT	4 cut(s)	25, 371, 601, 724
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	609
Alw44I	GTGCAC	1 cut(s)	381
AlwI	GGATC	3 cut(s)	302, 352, 382
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	4 cut(s)	12, 57, 216, 421
ApaLI	GTGCAC	1 cut(s)	381
ApeKI	GCWGC	2 cut(s)	368, 519
ApoI	RAATTY	1 cut(s)	586
AseI	ATTAAT	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	13, 216, 335
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	2 cut(s)	187, 289
AsuNHI	GCTAGC	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	335
BaeGI	GKGCMC	2 cut(s)	385, 568
BauI	CACGAG	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	2 cut(s)	380, 531
BciT130I	CCWGG	4 cut(s)	99, 180, 402, 455
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	609
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	2 cut(s)	517, 725
BfrI	CTTAAG	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	403
BisI	GCNGC	2 cut(s)	369, 520
BlsI	GCNGC	2 cut(s)	370, 521
Bme1390I	CCNGG	5 cut(s)	99, 180, 402, 455, 534
Bme18I	GGWCC	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	3 cut(s)	13, 216, 335
BmiI	GGNNCC	2 cut(s)	15, 640
BmrFI	CCNGG	5 cut(s)	99, 180, 402, 455, 534
BmsI	GCATC	1 cut(s)	541
BmtI	GCTAGC	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	534
BsaAI	YACGTR	1 cut(s)	493
BsaHI	GRCGYC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	424
BsaWI	WCCGGW	1 cut(s)	641
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	5 cut(s)	259, 317, 371, 401, 407
Bse118I	RCCGGY	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	4 cut(s)	99, 180, 402, 455
BseDI	CCNNGG	1 cut(s)	424
BseLI	CCNNNNNNNGG	5 cut(s)	259, 317, 371, 401, 407
BseMI	GCAATG	1 cut(s)	15
BseRI	GAGGAG	2 cut(s)	32, 420
BseSI	GKGCMC	2 cut(s)	385, 568
BseXI	GCAGC	2 cut(s)	380, 531
BseYI	CCCAGC	1 cut(s)	720
BsgI	GTGCAG	1 cut(s)	346
BshFI	GGCC	4 cut(s)	14, 59, 218, 423
BsiHKAI	GWGCWC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	4 cut(s)	52, 365, 534, 642
BslI	CCNNNNNNNGG	5 cut(s)	259, 317, 371, 401, 407
BsmAI	GTCTC	1 cut(s)	609
BsnI	GGCC	4 cut(s)	14, 59, 218, 423
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	385, 568
Bsp143I	GATC	4 cut(s)	202, 307, 344, 374
BspANI	GGCC	4 cut(s)	14, 59, 218, 423
BspLI	GGNNCC	2 cut(s)	15, 640
BspMAI	CTGCAG	1 cut(s)	521
BspMI	ACCTGC	1 cut(s)	403
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	3 cut(s)	302, 352, 382
BspTI	CTTAAG	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	424
BssMI	GATC	4 cut(s)	202, 307, 344, 374
BssNI	GRCGYC	1 cut(s)	572
BssSI	CACGAG	1 cut(s)	322
Bst2BI	CACGAG	1 cut(s)	322
Bst2UI	CCWGG	4 cut(s)	99, 180, 402, 455
Bst4CI	ACNGT	1 cut(s)	626
BstACI	GRCGYC	1 cut(s)	572
BstAFI	CTTAAG	1 cut(s)	602
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	6 cut(s)	57, 123, 142, 460, 477, 544
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	4 cut(s)	205, 310, 347, 377
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	4 cut(s)	202, 307, 344, 374
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 224, 516, 578
BstNI	CCWGG	4 cut(s)	99, 180, 402, 455
BstSCI	CCNGG	5 cut(s)	97, 178, 400, 453, 532
BstSFI	CTRYAG	2 cut(s)	517, 725
BstSLI	GKGCMC	2 cut(s)	385, 568
BstV1I	GCAGC	2 cut(s)	380, 531
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	4 cut(s)	14, 59, 218, 423
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	6 cut(s)	57, 123, 142, 460, 477, 544
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	3 cut(s)	13, 216, 335
CseI	GACGC	1 cut(s)	561
CsiI	ACCWGGT	1 cut(s)	178
Csp6I	GTAC	3 cut(s)	267, 669, 717
CviAII	CATG	2 cut(s)	430, 583
CviQI	GTAC	3 cut(s)	267, 669, 717
DpnI	GATC	4 cut(s)	204, 309, 346, 376
DpnII	GATC	4 cut(s)	202, 307, 344, 374
DraIII	CACNNNGTG	1 cut(s)	263
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	399
EcoRI	GAATTC	1 cut(s)	586
EcoRII	CCWGG	4 cut(s)	97, 178, 400, 453
EcoRV	GATATC	1 cut(s)	559
FaeI	CATG	2 cut(s)	433, 586
FaiI	YATR	7 cut(s)	131, 138, 230, 431, 549, 584, 727
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	2 cut(s)	429, 582
Fnu4HI	GCNGC	2 cut(s)	369, 520
Fsp4HI	GCNGC	2 cut(s)	369, 520
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	369, 520
GsaI	CCCAGC	1 cut(s)	724
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	4 cut(s)	14, 59, 218, 423
HapII	CCGG	4 cut(s)	52, 365, 534, 642
HgaI	GACGC	1 cut(s)	561
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	572
Hin1II	CATG	2 cut(s)	433, 586
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	2 cut(s)	358, 645
HpaII	CCGG	4 cut(s)	52, 365, 534, 642
HphI	GGTGA	2 cut(s)	187, 289
Hpy166II	GTNNAC	3 cut(s)	257, 383, 514
Hpy188I	TCNGA	2 cut(s)	339, 712
Hpy188III	TCNNGA	1 cut(s)	636
Hpy8I	GTNNAC	3 cut(s)	257, 383, 514
Hpy99I	CGWCG	2 cut(s)	80, 358
HpyAV	CCTTC	2 cut(s)	47, 56
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	2 cut(s)	492, 671
HpyCH4V	TGCA	5 cut(s)	121, 327, 383, 475, 519
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 224, 516, 578
HpySE526I	ACGT	2 cut(s)	492, 671
Hsp92I	GRCGYC	1 cut(s)	572
Hsp92II	CATG	2 cut(s)	433, 586
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	4 cut(s)	202, 307, 344, 374
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	2 cut(s)	380, 531
LweI	GCATC	1 cut(s)	541
MabI	ACCWGGT	1 cut(s)	178
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	2 cut(s)	492, 671
MalI	GATC	4 cut(s)	204, 309, 346, 376
MboI	GATC	4 cut(s)	202, 307, 344, 374
MboII	GAAGA	1 cut(s)	241
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	385, 568
MluCI	AATT	3 cut(s)	66, 171, 586
MlyI	GAGTC	1 cut(s)	639
MnlI	CCTC	8 cut(s)	53, 70, 229, 310, 398, 401, 419, 699
MseI	TTAA	3 cut(s)	69, 485, 603
MspA1I	CMGCKG	1 cut(s)	371
MspCI	CTTAAG	1 cut(s)	602
MspI	CCGG	4 cut(s)	52, 365, 534, 642
MspR9I	CCNGG	5 cut(s)	99, 180, 402, 455, 534
MvaI	CCWGG	4 cut(s)	99, 180, 402, 455
MwoI	GCNNNNNNNGC	4 cut(s)	198, 224, 516, 578
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	4 cut(s)	202, 307, 344, 374
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	2 cut(s)	433, 586
NlaIV	GGNNCC	2 cut(s)	15, 640
NmeAIII	GCCGAG	2 cut(s)	6, 449
PaqCI	CACCTGC	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	370, 521
PleI	GAGTC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	639
Ppu21I	YACGTR	1 cut(s)	493
PshBI	ATTAAT	1 cut(s)	69
Psp6I	CCWGG	4 cut(s)	97, 178, 400, 453
PspFI	CCCAGC	1 cut(s)	720
PspGI	CCWGG	4 cut(s)	97, 178, 400, 453
PspN4I	GGNNCC	2 cut(s)	15, 640
PspPI	GGNCC	3 cut(s)	13, 216, 335
PsrI	GAACNNNNNNTAC	2 cut(s)	473, 505
PstI	CTGCAG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	3 cut(s)	268, 670, 718
RsaNI	GTAC	3 cut(s)	267, 669, 717
SaqAI	TTAA	3 cut(s)	69, 485, 603
SatI	GCNGC	2 cut(s)	369, 520
Sau3AI	GATC	4 cut(s)	202, 307, 344, 374
Sau96I	GGNCC	3 cut(s)	13, 216, 335
SchI	GAGTC	1 cut(s)	639
ScrFI	CCNGG	5 cut(s)	99, 180, 402, 455, 534
SduI	GDGCHC	2 cut(s)	385, 568
SexAI	ACCWGGT	1 cut(s)	178
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	2 cut(s)	517, 725
SinI	GGWCC	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	3 cut(s)	66, 171, 586
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	5 cut(s)	97, 178, 400, 453, 532
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	2 cut(s)	495, 674
TaqI	TCGA	1 cut(s)	356
TasI	AATT	3 cut(s)	66, 171, 586
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	3 cut(s)	69, 485, 603
Tru9I	TTAA	3 cut(s)	69, 485, 603
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	2 cut(s)	368, 519
TspDTI	ATGAA	2 cut(s)	446, 599
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	1 cut(s)	310
Vha464I	CTTAAG	1 cut(s)	602
VneI	GTGCAC	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	335
VspI	ATTAAT	1 cut(s)	69
XagI	CCTNNNNNAGG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	586
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.