Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0017714

Physical Location & Seq

Genomic Coordinates Reverse (-)

17701983 .. 17702333

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22493.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAAACCATGGCCACCACCAAGCTCGTCTTCTCCCTCCTCCTCCTTCTCCGGCTGGCCTCCCCAACTAGTGCCGCCGAGTTCTGCGTGGCGAAACCAGGCGTTAGCGAACAAACTTTGCAAGCAAACATATTCTATGCATGCGCCCAATCAGGCGTAGACTGTTCGCCAATTCAACCAGGTGGCTCTTGCTACACCAGCGATCTCACCACTTGGGCCTCCTACGCTATGAATGCTTATTTCAATGTCTACCGCTCAAAGGGTGCTACTTGTGATTTCTCTCAATCGGCACAGCTCACCTCTACCGATCCAAGTTCGTCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

109

Amino Acids

11.49

Weight (kDa)

6.01

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	28 - 97	9.6e-17	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22492 FvH4_7g22493
rosa_chinensis	RchiOBHm_Chr1g0367111
rosa_laevigata	RLG00000027297
rosa_multiflora	Rmu_co8444521.1_g000001 Rmu_sc0007424.1_g000008 Rmu_sc0007844.1_g000001
rosa_rugosa	Rorug01G0334600
rosa_samantha	Rh1AG341400 Rh1BG301900 Rh1CG318300 Rh1DG334400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	255
AccI	GTMKAC	2 cut(s)	159, 249
AciI	CCGC	2 cut(s)	75, 253
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	176, 244
AhlI	ACTAGT	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	97, 178
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	2 cut(s)	25, 295
AluI	AGCT	2 cut(s)	25, 295
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	3 cut(s)	12, 57, 216
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	199, 289
BalI	TGGCCA	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	99, 180
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	99, 180
BmgT120I	GGNCC	1 cut(s)	216
BmrFI	CCNGG	2 cut(s)	99, 180
BpiI	GAAGAC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
BseBI	CCWGG	2 cut(s)	99, 180
BseDI	CCNNGG	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseRI	GAGGAG	2 cut(s)	29, 32
BshFI	GGCC	3 cut(s)	14, 59, 218
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	3 cut(s)	14, 59, 218
Bsp143I	GATC	2 cut(s)	202, 307
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	2 cut(s)	75, 253
BspANI	GGCC	3 cut(s)	14, 59, 218
BspPI	GGATC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	2 cut(s)	202, 307
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	99, 180
Bst4CI	ACNGT	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	57, 123, 142
BstDSI	CCRYGG	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	205, 310
BstMBI	GATC	2 cut(s)	202, 307
BstMWI	GCNNNNNNNGC	3 cut(s)	198, 224, 233
BstNI	CCWGG	2 cut(s)	99, 180
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	2 cut(s)	97, 178
BstV2I	GAAGAC	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	14, 59, 218
BtgI	CCRYGG	1 cut(s)	9
Cac8I	GCNNGC	3 cut(s)	57, 123, 142
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	216
CsiI	ACCWGGT	1 cut(s)	178
CviAII	CATG	2 cut(s)	10, 141
CviJI	RGCY	7 cut(s)	14, 25, 55, 59, 186, 218, 295
CviKI_1	RGCY	7 cut(s)	14, 25, 55, 59, 186, 218, 295
DpnI	GATC	2 cut(s)	204, 309
DpnII	GATC	2 cut(s)	202, 307
EaeI	YGGCCR	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	9
EcoRII	CCWGG	2 cut(s)	97, 178
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	2 cut(s)	13, 144
FaiI	YATR	6 cut(s)	11, 131, 138, 142, 230, 325
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	2 cut(s)	9, 140
FblI	GTMKAC	2 cut(s)	159, 249
Fnu4HI	GCNGC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	14, 59, 218
HapII	CCGG	1 cut(s)	52
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	13, 144
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	2 cut(s)	199, 289
Hpy166II	GTNNAC	2 cut(s)	160, 250
Hpy8I	GTNNAC	2 cut(s)	160, 250
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	2 cut(s)	121, 140
HpyF10VI	GCNNNNNNNGC	3 cut(s)	198, 224, 233
Hsp92II	CATG	2 cut(s)	13, 144
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	202, 307
LpnPI	CCDG	8 cut(s)	41, 65, 84, 111, 138, 165, 192, 211
MabI	ACCWGGT	1 cut(s)	178
MaeI	CTAG	1 cut(s)	69
MalI	GATC	2 cut(s)	204, 309
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	2 cut(s)	202, 307
MboII	GAAGA	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	1 cut(s)	171
MluNI	TGGCCA	1 cut(s)	14
MnlI	CCTC	6 cut(s)	47, 50, 53, 70, 229, 310
Mox20I	TGGCCA	1 cut(s)	14
Mph1103I	ATGCAT	1 cut(s)	142
MscI	TGGCCA	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	2 cut(s)	99, 180
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	2 cut(s)	99, 180
MwoI	GCNNNNNNNGC	3 cut(s)	198, 224, 233
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	202, 307
NlaIII	CATG	2 cut(s)	13, 144
NmeAIII	GCCGAG	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	142
NspI	RCATGY	1 cut(s)	144
PaeI	GCATGC	1 cut(s)	144
PctI	GAATGC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	97, 178
PspGI	CCWGG	2 cut(s)	97, 178
PspPI	GGNCC	1 cut(s)	216
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	202, 307
Sau96I	GGNCC	1 cut(s)	216
ScrFI	CCNGG	2 cut(s)	99, 180
SetI	ASST	4 cut(s)	27, 184, 297, 302
SexAI	ACCWGGT	1 cut(s)	178
SpeI	ACTAGT	1 cut(s)	68
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	2 cut(s)	75, 253
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	97, 178
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	164
TasI	AATT	1 cut(s)	171
TauI	GCSGC	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	17, 245
XceI	RCATGY	1 cut(s)	144
XmiI	GTMKAC	2 cut(s)	159, 249
XspI	CTAG	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.