Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017714

Physical Location & Seq

Genomic Coordinates Forward (+)

10416669 .. 10418189

Gene Structure 1521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027297

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAAGCAATTAATGCCGACGACTTTTGCGTAGCAAAACCAGGCGTTAGCGAACAAACTTTGCAAGCAAACATAAACTATGCGTGCGCTCAACAAGGCGTAGATTGTTCGCCAATTCAACCAGGTGGTTCTTGCTTCACCAGCGATCTCATCACTCGGGCCTCCTACGCTATGACCACTTACTACAATGTCTTCCGTTCACAGGGTGGTACTTGTGATTTCACTCAATCGGCACAACTCACCTCCACTGATCCAAGTAAAGGCCCGTGCAGTTTTGGTCCGAAAGGATCTGGTTCGTCAAATCCACCGGCAGCTGGATCAGGTGCACCAACTACACCTGCTCTAGGAGGAGGCAAAGGCAAAGGCCGAGGCATGAAGTGGTGCGTAGCCAAGCACCAGGCTAGCCAACAAGACTTGGAAGCGAACTTAAACTACGTGTGTGCTAATCAGGGCGTGGACTGCAGCCCGATACAGCCCGGTGGTGCTTGCTATGATGCTGATATCAGGGCTCGGGCGTCCTACGCCATGAATTCTTACTATCAGCTTAGGGGTCGTAGCGACTTCAACTGTCATTTCTCTGGAACCGGACTCATCACAATCAGCGACCCAAGTCACGGAGGATGCAACTATATCCAGGCTAGTGGCCAGGGACCATCTGGACCAACACCAACCCAACCAAGCAAACCTGCTCAACCATCTACCGGAGGTAATGGACAGTGGTGCGTACCGAAACAAGAGGCAACCGACCAGGTTTTGCAGCAAAACATAAACTGGTTGTGCGGCACCCATAAGAACGGCCGCAACAATTACGACTGTGATTTCGTTGGAACCGCTCAAGTGACCAACATCAACCCAAGCTGGGGCAGTTGTGTTTACGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

295

Amino Acids

30.75

Weight (kDa)

6.39

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	9 - 78	2.1e-16	X8 domain
X8	PF07983	126 - 196	9.4e-20	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017714)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22492 FvH4_7g22493
rosa_chinensis	RchiOBHm_Chr1g0367111
rosa_laevigata	RLG00000027297
rosa_multiflora	Rmu_co8444521.1_g000001 Rmu_sc0007424.1_g000008 Rmu_sc0007844.1_g000001
rosa_rugosa	Rorug01G0334600
rosa_samantha	Rh1AG341400 Rh1BG301900 Rh1CG318300 Rh1DG334400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	346
Acc36I	ACCTGC	2 cut(s)	346, 694
AccB1I	GGYRCC	1 cut(s)	782
AccBSI	CCGCTC	1 cut(s)	833
AciI	CCGC	3 cut(s)	780, 799, 831
AclWI	GGATC	3 cut(s)	245, 295, 325
AcoI	YGGCCR	2 cut(s)	643, 796
AcsI	RAATTY	1 cut(s)	529
AcyI	GRCGYC	1 cut(s)	515
AdeI	CACNNNGTG	1 cut(s)	206
AfaI	GTAC	2 cut(s)	211, 726
AfiI	CCNNNNNNNGG	8 cut(s)	202, 260, 314, 344, 614, 701, 859, 860
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	119, 565
AjnI	CCWGG	6 cut(s)	40, 121, 396, 633, 645, 747
AluBI	AGCT	3 cut(s)	314, 544, 858
AluI	AGCT	3 cut(s)	314, 544, 858
Alw21I	GWGCWC	1 cut(s)	328
Alw44I	GTGCAC	1 cut(s)	324
AlwI	GGATC	3 cut(s)	245, 295, 325
Ama87I	CYCGRG	2 cut(s)	156, 510
AoxI	GGCC	5 cut(s)	159, 262, 364, 643, 796
ApaLI	GTGCAC	1 cut(s)	324
ApeKI	GCWGC	3 cut(s)	311, 462, 757
ApoI	RAATTY	1 cut(s)	529
ArsI	GACNNNNNNTTYG	2 cut(s)	803, 835
AseI	ATTAAT	1 cut(s)	12
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	5 cut(s)	159, 263, 278, 650, 659
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	2 cut(s)	130, 232
AsuNHI	GCTAGC	1 cut(s)	401
AvaI	CYCGRG	2 cut(s)	156, 510
AvaII	GGWCC	3 cut(s)	278, 650, 659
BaeGI	GKGCMC	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	645
BanI	GGYRCC	1 cut(s)	782
BanII	GRGCYC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	3 cut(s)	323, 474, 769
BccI	CCATC	2 cut(s)	661, 703
BceAI	ACGGC	1 cut(s)	811
BciT130I	CCWGG	6 cut(s)	42, 123, 398, 635, 647, 749
BcnI	CCSGG	1 cut(s)	477
BfaI	CTAG	3 cut(s)	344, 402, 639
BfmI	CTRYAG	1 cut(s)	460
BfuAI	ACCTGC	2 cut(s)	346, 694
BisI	GCNGC	5 cut(s)	312, 463, 758, 781, 799
BlsI	GCNGC	5 cut(s)	313, 464, 759, 782, 800
Bme1390I	CCNGG	7 cut(s)	42, 123, 398, 477, 635, 647, 749
Bme18I	GGWCC	3 cut(s)	278, 650, 659
BmeT110I	CYCGRG	2 cut(s)	156, 510
BmgT120I	GGNCC	5 cut(s)	159, 263, 278, 650, 659
BmiI	GGNNCC	4 cut(s)	583, 651, 784, 829
BmrFI	CCNGG	7 cut(s)	42, 123, 398, 477, 635, 647, 749
BmsI	GCATC	2 cut(s)	484, 611
BmtI	GCTAGC	1 cut(s)	405
BoxI	GACNNNNGTC	1 cut(s)	609
BpiI	GAAGAC	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	819
BpuMI	CCSGG	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	436
BsaHI	GRCGYC	1 cut(s)	515
BsaJI	CCNNGG	2 cut(s)	367, 646
BsaWI	WCCGGW	2 cut(s)	584, 701
Bsc4I	CCNNNNNNNGG	8 cut(s)	202, 260, 314, 344, 614, 701, 859, 860
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	776
BseBI	CCWGG	6 cut(s)	42, 123, 398, 635, 647, 749
BseDI	CCNNGG	2 cut(s)	367, 646
BseGI	GGATG	1 cut(s)	626
BseLI	CCNNNNNNNGG	8 cut(s)	202, 260, 314, 344, 614, 701, 859, 860
BseNI	ACTGG	1 cut(s)	776
BseRI	GAGGAG	1 cut(s)	363
BseSI	GKGCMC	1 cut(s)	328
BseX3I	CGGCCG	1 cut(s)	796
BseXI	GCAGC	3 cut(s)	323, 474, 769
BseYI	CCCAGC	1 cut(s)	858
BsgI	GTGCAG	1 cut(s)	289
Bsh1285I	CGRYCG	1 cut(s)	799
BshFI	GGCC	5 cut(s)	161, 264, 366, 645, 798
BshNI	GGYRCC	1 cut(s)	782
BsiEI	CGRYCG	1 cut(s)	799
BsiHKAI	GWGCWC	1 cut(s)	328
BsiHKCI	CYCGRG	2 cut(s)	156, 510
BsiSI	CCGG	4 cut(s)	308, 477, 585, 702
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	8 cut(s)	202, 260, 314, 344, 614, 701, 859, 860
BsmFI	GGGAC	1 cut(s)	663
BsnI	GGCC	5 cut(s)	161, 264, 366, 645, 798
BsoBI	CYCGRG	2 cut(s)	156, 510
Bsp1286I	GDGCHC	2 cut(s)	328, 511
Bsp143I	GATC	4 cut(s)	145, 250, 287, 317
BspACI	CCGC	3 cut(s)	780, 799, 831
BspANI	GGCC	5 cut(s)	161, 264, 366, 645, 798
BspLI	GGNNCC	4 cut(s)	583, 651, 784, 829
BspMAI	CTGCAG	1 cut(s)	464
BspMI	ACCTGC	2 cut(s)	346, 694
BspOI	GCTAGC	1 cut(s)	405
BspPI	GGATC	3 cut(s)	245, 295, 325
BspT107I	GGYRCC	1 cut(s)	782
BsrBI	CCGCTC	1 cut(s)	833
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	776
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	367, 646
BssMI	GATC	4 cut(s)	145, 250, 287, 317
BssNI	GRCGYC	1 cut(s)	515
Bst2UI	CCWGG	6 cut(s)	42, 123, 398, 635, 647, 749
Bst4CI	ACNGT	3 cut(s)	569, 717, 815
BstACI	GRCGYC	1 cut(s)	515
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	4 cut(s)	66, 85, 403, 487
BstDEI	CTNAG	1 cut(s)	545
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	626
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	4 cut(s)	148, 253, 290, 320
BstMBI	GATC	4 cut(s)	145, 250, 287, 317
BstMCI	CGRYCG	1 cut(s)	799
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 141, 167, 459, 521
BstNI	CCWGG	6 cut(s)	42, 123, 398, 635, 647, 749
BstPAI	GACNNNNGTC	1 cut(s)	609
BstSCI	CCNGG	7 cut(s)	40, 121, 396, 475, 633, 645, 747
BstSFI	CTRYAG	1 cut(s)	460
BstSLI	GKGCMC	1 cut(s)	328
BstV1I	GCAGC	3 cut(s)	323, 474, 769
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	287
BstXI	CCANNNNNNTGG	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	287
BstZI	CGGCCG	1 cut(s)	796
BsuRI	GGCC	5 cut(s)	161, 264, 366, 645, 798
BtsCI	GGATG	1 cut(s)	626
BtsIMutI	CAGTG	2 cut(s)	246, 722
BveI	ACCTGC	2 cut(s)	346, 694
Cac8I	GCNNGC	4 cut(s)	66, 85, 403, 487
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	5 cut(s)	159, 263, 278, 650, 659
CseI	GACGC	1 cut(s)	504
CsiI	ACCWGGT	2 cut(s)	121, 747
Csp6I	GTAC	2 cut(s)	210, 725
CviAII	CATG	2 cut(s)	373, 526
CviQI	GTAC	2 cut(s)	210, 725
DdeI	CTNAG	1 cut(s)	545
DpnI	GATC	4 cut(s)	147, 252, 289, 319
DpnII	GATC	4 cut(s)	145, 250, 287, 317
DraIII	CACNNNGTG	1 cut(s)	206
EaeI	YGGCCR	2 cut(s)	643, 796
EagI	CGGCCG	1 cut(s)	796
EclXI	CGGCCG	1 cut(s)	796
Eco24I	GRGCYC	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	502
Eco47I	GGWCC	3 cut(s)	278, 650, 659
Eco52I	CGGCCG	1 cut(s)	796
Eco88I	CYCGRG	2 cut(s)	156, 510
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	529
EcoRII	CCWGG	6 cut(s)	40, 121, 396, 633, 645, 747
EcoRV	GATATC	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	511
FaeI	CATG	2 cut(s)	376, 529
FaiI	YATR	9 cut(s)	74, 81, 173, 374, 492, 527, 630, 767, 789
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	2 cut(s)	372, 525
Fnu4HI	GCNGC	5 cut(s)	312, 463, 758, 781, 799
FokI	GGATG	1 cut(s)	633
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	5 cut(s)	312, 463, 758, 781, 799
FspBI	CTAG	3 cut(s)	344, 402, 639
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	5 cut(s)	312, 463, 758, 781, 799
GsaI	CCCAGC	1 cut(s)	862
HaeIII	GGCC	5 cut(s)	161, 264, 366, 645, 798
HapII	CCGG	4 cut(s)	308, 477, 585, 702
HgaI	GACGC	1 cut(s)	504
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	515
Hin1II	CATG	2 cut(s)	376, 529
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	1 cut(s)	588
HpaII	CCGG	4 cut(s)	308, 477, 585, 702
HphI	GGTGA	2 cut(s)	130, 232
Hpy166II	GTNNAC	4 cut(s)	200, 326, 457, 874
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	3 cut(s)	579, 657, 882
Hpy8I	GTNNAC	4 cut(s)	200, 326, 457, 874
Hpy99I	CGWCG	1 cut(s)	23
HpyCH4III	ACNGT	3 cut(s)	569, 717, 815
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	6 cut(s)	64, 270, 326, 462, 624, 757
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 141, 167, 459, 521
HpyF3I	CTNAG	1 cut(s)	545
HpySE526I	ACGT	1 cut(s)	435
Hsp92I	GRCGYC	1 cut(s)	515
Hsp92II	CATG	2 cut(s)	376, 529
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	4 cut(s)	145, 250, 287, 317
Lsp1109I	GCAGC	3 cut(s)	323, 474, 769
LweI	GCATC	2 cut(s)	484, 611
MabI	ACCWGGT	2 cut(s)	121, 747
MaeI	CTAG	3 cut(s)	344, 402, 639
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	611, 838
MalI	GATC	4 cut(s)	147, 252, 289, 319
MbiI	CCGCTC	1 cut(s)	833
MboI	GATC	4 cut(s)	145, 250, 287, 317
MboII	GAAGA	1 cut(s)	184
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	2 cut(s)	328, 511
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	4 cut(s)	9, 114, 529, 805
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	582
MmeI	TCCRAC	1 cut(s)	805
MnlI	CCTC	8 cut(s)	172, 253, 341, 344, 362, 611, 698, 730
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	2 cut(s)	12, 428
Msp20I	TGGCCA	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	4 cut(s)	308, 477, 585, 702
MspR9I	CCNGG	7 cut(s)	42, 123, 398, 477, 635, 647, 749
MvaI	CCWGG	6 cut(s)	42, 123, 398, 635, 647, 749
MwoI	GCNNNNNNNGC	5 cut(s)	14, 141, 167, 459, 521
NciI	CCSGG	1 cut(s)	477
NdeII	GATC	4 cut(s)	145, 250, 287, 317
NheI	GCTAGC	1 cut(s)	401
NlaIII	CATG	2 cut(s)	376, 529
NlaIV	GGNNCC	4 cut(s)	583, 651, 784, 829
NmeAIII	GCCGAG	1 cut(s)	392
NmuCI	GTSAC	2 cut(s)	611, 838
PaqCI	CACCTGC	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PkrI	GCNGC	5 cut(s)	313, 464, 759, 782, 800
PleI	GAGTC	1 cut(s)	582
PpsI	GAGTC	1 cut(s)	582
Ppu21I	YACGTR	1 cut(s)	436
PshAI	GACNNNNGTC	1 cut(s)	609
PshBI	ATTAAT	1 cut(s)	12
Psp6I	CCWGG	6 cut(s)	40, 121, 396, 633, 645, 747
PspFI	CCCAGC	1 cut(s)	858
PspGI	CCWGG	6 cut(s)	40, 121, 396, 633, 645, 747
PspN4I	GGNNCC	4 cut(s)	583, 651, 784, 829
PspPI	GGNCC	5 cut(s)	159, 263, 278, 650, 659
PsrI	GAACNNNNNNTAC	2 cut(s)	416, 448
PstI	CTGCAG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	2 cut(s)	211, 726
RsaNI	GTAC	2 cut(s)	210, 725
SaqAI	TTAA	2 cut(s)	12, 428
SatI	GCNGC	5 cut(s)	312, 463, 758, 781, 799
Sau3AI	GATC	4 cut(s)	145, 250, 287, 317
Sau96I	GGNCC	5 cut(s)	159, 263, 278, 650, 659
SchI	GAGTC	1 cut(s)	582
ScrFI	CCNGG	7 cut(s)	42, 123, 398, 477, 635, 647, 749
SduI	GDGCHC	2 cut(s)	328, 511
SexAI	ACCWGGT	2 cut(s)	121, 747
SfaNI	GCATC	2 cut(s)	484, 611
SfcI	CTRYAG	1 cut(s)	460
SinI	GGWCC	3 cut(s)	278, 650, 659
SmlI	CTYRAG	1 cut(s)	834
SmoI	CTYRAG	1 cut(s)	834
Sse9I	AATT	4 cut(s)	9, 114, 529, 805
SsiI	CCGC	3 cut(s)	780, 799, 831
SspMI	CTAG	3 cut(s)	344, 402, 639
StyD4I	CCNGG	7 cut(s)	40, 121, 396, 475, 633, 645, 747
TaaI	ACNGT	3 cut(s)	569, 717, 815
TaiI	ACGT	1 cut(s)	438
TasI	AATT	4 cut(s)	9, 114, 529, 805
TauI	GCSGC	2 cut(s)	783, 801
Tru1I	TTAA	2 cut(s)	12, 428
Tru9I	TTAA	2 cut(s)	12, 428
TscAI	CASTG	2 cut(s)	253, 722
TseFI	GTSAC	2 cut(s)	611, 838
TseI	GCWGC	3 cut(s)	311, 462, 757
Tsp45I	GTSAC	2 cut(s)	611, 838
TspDTI	ATGAA	2 cut(s)	389, 542
TspGWI	ACGGA	2 cut(s)	185, 630
TspRI	CASTG	2 cut(s)	253, 722
VneI	GTGCAC	1 cut(s)	324
VpaK11BI	GGWCC	3 cut(s)	278, 650, 659
VspI	ATTAAT	1 cut(s)	12
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	1 cut(s)	529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XspI	CTAG	3 cut(s)	344, 402, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.