Rmu_sc0007844.1_g000001

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007844.1
Physical Location & Seq
Reverse (-)
5560 .. 7143
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007844.1_g000001.1.cds

Sequence Viewer

Length: 1026 bp
atggcccctaccaagctcggcttttaccttctcctccttctccggctggcctccacaattaatgccgacgacttttgcgtagcaaaaccaggcgttagcgaacaaactttgcaagcaaacataaactatgcgtgcgctcaacaaggcgtagattgttcgccaattcaaccaggtggttcttgcttcaccagcgatctcatcactcgggcctcctacgctatgaccacttactacaatgtcttccgttcacagggtggtacttgtgatttcactcaatcggcacaactcacctccactgatccaagtaaaggctcgtgcagttttggtccgaaaggatctggttcgtcgaatccaccggcagctggatcaggtgcaccaactacacctgctccaggaggagtcaaaggcaaaggccgaggcatgaagtggtgcgtagccaagcaccaggctagccaacaagacttgcaagcgaacttaaactacgtgtgtgctaatcagggcgtggactgcagcccgatacagcccggtggtgcttgctatgatgctgatatcagggcacgggcgtcctacgccatgaattcttactatcagcttaagggtcgtagagacttcaactgtgatttctctggaaccggactcattacaatcagcgacccaagtcacggaggatgcaactatatccaggctggtggccatggaccatctggaccaacaccaacccaaccaagcacacctgctaaaccatctaccggaggtaatggacggtggtgcgtaccaaaacaagaggcaaccgaccaggttttgcagcaaaacataaactggttgtgcggcacctataaggtgaattgtgacgacgtattgggtggtggtaaatgctgggcgcgagcaatccggccacgggcatcctacctcatggatctttactacaagcagaacggccgcaacaattacgactgtgatttcgttggaaccgctcaagtcaccaacatcaacccaagctggggcagttgtgtttacggctcttga

Protein Analysis

341

Amino Acids

36.11

Weight (kDa)

8.48

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017714)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 394, 742
Acc36I ACCTGC 2 cut(s) 394, 742
AccB1I GGYRCC 1 cut(s) 830
AccBSI CCGCTC 1 cut(s) 974
AccII CGCG 1 cut(s) 883
AciI CCGC 3 cut(s) 828, 940, 972
AclWI GGATC 4 cut(s) 293, 343, 373, 924
AcoI YGGCCR 3 cut(s) 691, 893, 937
AcsI RAATTY 1 cut(s) 577
AcyI GRCGYC 1 cut(s) 563
AdeI CACNNNGTG 1 cut(s) 254
AfaI GTAC 2 cut(s) 259, 774
AfiI CCNNNNNNNGG 9 cut(s) 250, 308, 362, 392, 662, 749, 898, 1000, 1001
AflII CTTAAG 1 cut(s) 593
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 2 cut(s) 167, 613
AjnI CCWGG 6 cut(s) 88, 169, 391, 444, 681, 795
AluBI AGCT 4 cut(s) 16, 362, 592, 999
AluI AGCT 4 cut(s) 16, 362, 592, 999
Alw21I GWGCWC 1 cut(s) 376
Alw26I GTCTC 1 cut(s) 600
Alw44I GTGCAC 1 cut(s) 372
AlwI GGATC 4 cut(s) 293, 343, 373, 924
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 7 cut(s) 3, 48, 207, 412, 691, 893, 937
ApaLI GTGCAC 1 cut(s) 372
ApeKI GCWGC 3 cut(s) 359, 510, 805
ApoI RAATTY 1 cut(s) 577
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
AseI ATTAAT 1 cut(s) 60
AspLEI GCGC 2 cut(s) 137, 883
AspS9I GGNCC 5 cut(s) 4, 207, 326, 698, 707
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 4 cut(s) 178, 280, 853, 973
AsuNHI GCTAGC 1 cut(s) 449
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 3 cut(s) 326, 698, 707
BaeGI GKGCMC 2 cut(s) 376, 559
BalI TGGCCA 1 cut(s) 693
BanI GGYRCC 1 cut(s) 830
BauI CACGAG 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 3 cut(s) 371, 522, 817
BccI CCATC 2 cut(s) 709, 751
BceAI ACGGC 1 cut(s) 952
BciT130I CCWGG 6 cut(s) 90, 171, 393, 446, 683, 797
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 600
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 508
BfrI CTTAAG 1 cut(s) 593
BfuAI ACCTGC 2 cut(s) 394, 742
BisI GCNGC 5 cut(s) 360, 511, 806, 829, 940
BlsI GCNGC 5 cut(s) 361, 512, 807, 830, 941
Bme1390I CCNGG 7 cut(s) 90, 171, 393, 446, 525, 683, 797
Bme18I GGWCC 3 cut(s) 326, 698, 707
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 5 cut(s) 4, 207, 326, 698, 707
BmiI GGNNCC 4 cut(s) 6, 631, 832, 970
BmrFI CCNGG 7 cut(s) 90, 171, 393, 446, 525, 683, 797
BmsI GCATC 3 cut(s) 532, 659, 911
BmtI GCTAGC 1 cut(s) 453
BoxI GACNNNNGTC 1 cut(s) 657
BpiI GAAGAC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 960
BpuMI CCSGG 1 cut(s) 525
BsaAI YACGTR 1 cut(s) 484
BsaHI GRCGYC 1 cut(s) 563
BsaJI CCNNGG 3 cut(s) 415, 694, 896
BsaWI WCCGGW 2 cut(s) 632, 749
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 9 cut(s) 250, 308, 362, 392, 662, 749, 898, 1000, 1001
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 824
BseBI CCWGG 6 cut(s) 90, 171, 393, 446, 683, 797
BseDI CCNNGG 3 cut(s) 415, 694, 896
BseGI GGATG 2 cut(s) 674, 902
BseLI CCNNNNNNNGG 9 cut(s) 250, 308, 362, 392, 662, 749, 898, 1000, 1001
BseNI ACTGG 1 cut(s) 824
BseRI GAGGAG 2 cut(s) 23, 411
BseSI GKGCMC 2 cut(s) 376, 559
BseX3I CGGCCG 1 cut(s) 937
BseXI GCAGC 3 cut(s) 371, 522, 817
BseYI CCCAGC 2 cut(s) 876, 999
BsgI GTGCAG 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 883
Bsh1285I CGRYCG 1 cut(s) 940
BshFI GGCC 7 cut(s) 5, 50, 209, 414, 693, 895, 939
BshNI GGYRCC 1 cut(s) 830
BsiEI CGRYCG 1 cut(s) 940
BsiHKAI GWGCWC 1 cut(s) 376
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 6 cut(s) 43, 356, 525, 633, 750, 892
BslI CCNNNNNNNGG 9 cut(s) 250, 308, 362, 392, 662, 749, 898, 1000, 1001
BsmAI GTCTC 1 cut(s) 600
BsnI GGCC 7 cut(s) 5, 50, 209, 414, 693, 895, 939
BsoBI CYCGRG 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 376, 559
Bsp143I GATC 5 cut(s) 193, 298, 335, 365, 916
Bsp19I CCATGG 1 cut(s) 694
BspACI CCGC 3 cut(s) 828, 940, 972
BspANI GGCC 7 cut(s) 5, 50, 209, 414, 693, 895, 939
BspFNI CGCG 1 cut(s) 883
BspLI GGNNCC 4 cut(s) 6, 631, 832, 970
BspMAI CTGCAG 1 cut(s) 512
BspMI ACCTGC 2 cut(s) 394, 742
BspOI GCTAGC 1 cut(s) 453
BspPI GGATC 4 cut(s) 293, 343, 373, 924
BspT107I GGYRCC 1 cut(s) 830
BspTI CTTAAG 1 cut(s) 593
BsrBI CCGCTC 1 cut(s) 974
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 1 cut(s) 824
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 415, 694, 896
BssMI GATC 5 cut(s) 193, 298, 335, 365, 916
BssNI GRCGYC 1 cut(s) 563
BssSI CACGAG 1 cut(s) 313
BssT1I CCWWGG 1 cut(s) 694
Bst2BI CACGAG 1 cut(s) 313
Bst2UI CCWGG 6 cut(s) 90, 171, 393, 446, 683, 797
Bst4CI ACNGT 3 cut(s) 617, 765, 956
BstACI GRCGYC 1 cut(s) 563
BstAFI CTTAAG 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 7 cut(s) 48, 114, 133, 451, 468, 535, 885
BstDSI CCRYGG 2 cut(s) 694, 896
BstENI CCTNNNNNAGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 674, 902
BstFNI CGCG 1 cut(s) 883
BstHHI GCGC 2 cut(s) 137, 883
BstKTI GATC 5 cut(s) 196, 301, 338, 368, 919
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 5 cut(s) 193, 298, 335, 365, 916
BstMCI CGRYCG 1 cut(s) 940
BstMWI GCNNNNNNNGC 4 cut(s) 189, 215, 507, 569
BstNI CCWGG 6 cut(s) 90, 171, 393, 446, 683, 797
BstPAI GACNNNNGTC 1 cut(s) 657
BstSCI CCNGG 7 cut(s) 88, 169, 391, 444, 523, 681, 795
BstSFI CTRYAG 1 cut(s) 508
BstSLI GKGCMC 2 cut(s) 376, 559
BstUI CGCG 1 cut(s) 883
BstV1I GCAGC 3 cut(s) 371, 522, 817
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 2 cut(s) 335, 916
BstXI CCANNNNNNTGG 1 cut(s) 689
BstYI RGATCY 2 cut(s) 335, 916
BstZI CGGCCG 1 cut(s) 937
BsuRI GGCC 7 cut(s) 5, 50, 209, 414, 693, 895, 939
BtgI CCRYGG 2 cut(s) 694, 896
BtsCI GGATG 2 cut(s) 674, 902
BtsIMutI CAGTG 1 cut(s) 294
BveI ACCTGC 2 cut(s) 394, 742
Cac8I GCNNGC 7 cut(s) 48, 114, 133, 451, 468, 535, 885
CfoI GCGC 2 cut(s) 137, 883
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 5 cut(s) 4, 207, 326, 698, 707
CseI GACGC 1 cut(s) 552
CsiI ACCWGGT 2 cut(s) 169, 795
Csp6I GTAC 2 cut(s) 258, 773
CviAII CATG 4 cut(s) 421, 574, 695, 913
CviQI GTAC 2 cut(s) 258, 773
DpnI GATC 5 cut(s) 195, 300, 337, 367, 918
DpnII GATC 5 cut(s) 193, 298, 335, 365, 916
DraIII CACNNNGTG 1 cut(s) 254
EaeI YGGCCR 3 cut(s) 691, 893, 937
EagI CGGCCG 1 cut(s) 937
EclXI CGGCCG 1 cut(s) 937
Eco130I CCWWGG 1 cut(s) 694
Eco32I GATATC 1 cut(s) 550
Eco47I GGWCC 3 cut(s) 326, 698, 707
Eco52I CGGCCG 1 cut(s) 937
Eco88I CYCGRG 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 390
EcoRI GAATTC 1 cut(s) 577
EcoRII CCWGG 6 cut(s) 88, 169, 391, 444, 681, 795
EcoRV GATATC 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 694
ErhI CCWWGG 1 cut(s) 694
FaeI CATG 4 cut(s) 424, 577, 698, 916
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 4 cut(s) 420, 573, 694, 912
Fnu4HI GCNGC 5 cut(s) 360, 511, 806, 829, 940
FokI GGATG 2 cut(s) 681, 889
Fsp4HI GCNGC 5 cut(s) 360, 511, 806, 829, 940
FspBI CTAG 1 cut(s) 450
GlaI GCGC 2 cut(s) 136, 882
GluI GCNGC 5 cut(s) 360, 511, 806, 829, 940
GsaI CCCAGC 2 cut(s) 880, 1003
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 7 cut(s) 5, 50, 209, 414, 693, 895, 939
HapII CCGG 6 cut(s) 43, 356, 525, 633, 750, 892
HgaI GACGC 1 cut(s) 552
HhaI GCGC 2 cut(s) 137, 883
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 4 cut(s) 424, 577, 698, 916
Hin6I GCGC 2 cut(s) 135, 881
HinP1I GCGC 2 cut(s) 135, 881
HinfI GANTC 3 cut(s) 349, 399, 636
HpaII CCGG 6 cut(s) 43, 356, 525, 633, 750, 892
HphI GGTGA 4 cut(s) 178, 280, 853, 973
Hpy166II GTNNAC 4 cut(s) 248, 374, 505, 1015
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 3 cut(s) 627, 705, 1023
Hpy8I GTNNAC 4 cut(s) 248, 374, 505, 1015
Hpy99I CGWCG 3 cut(s) 71, 349, 857
HpyAV CCTTC 2 cut(s) 38, 47
HpyCH4III ACNGT 3 cut(s) 617, 765, 956
HpyCH4IV ACGT 2 cut(s) 483, 855
HpyCH4V TGCA 7 cut(s) 112, 318, 374, 466, 510, 672, 805
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 215, 507, 569
HpySE526I ACGT 2 cut(s) 483, 855
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 4 cut(s) 424, 577, 698, 916
HspAI GCGC 2 cut(s) 135, 881
Kzo9I GATC 5 cut(s) 193, 298, 335, 365, 916
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 3 cut(s) 371, 522, 817
LweI GCATC 3 cut(s) 532, 659, 911
MabI ACCWGGT 2 cut(s) 169, 795
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 483, 855
MaeIII GTNAC 3 cut(s) 659, 848, 979
MalI GATC 5 cut(s) 195, 300, 337, 367, 918
MbiI CCGCTC 1 cut(s) 974
MboI GATC 5 cut(s) 193, 298, 335, 365, 916
MboII GAAGA 1 cut(s) 232
MflI RGATCY 2 cut(s) 335, 916
MhlI GDGCHC 2 cut(s) 376, 559
MlsI TGGCCA 1 cut(s) 693
MluCI AATT 5 cut(s) 57, 162, 577, 844, 946
MluNI TGGCCA 1 cut(s) 693
MlyI GAGTC 2 cut(s) 408, 630
MmeI TCCRAC 1 cut(s) 946
Mox20I TGGCCA 1 cut(s) 693
MscI TGGCCA 1 cut(s) 693
MseI TTAA 3 cut(s) 60, 476, 594
Msp20I TGGCCA 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 362
MspCI CTTAAG 1 cut(s) 593
MspI CCGG 6 cut(s) 43, 356, 525, 633, 750, 892
MspR9I CCNGG 7 cut(s) 90, 171, 393, 446, 525, 683, 797
MvaI CCWGG 6 cut(s) 90, 171, 393, 446, 683, 797
MvnI CGCG 1 cut(s) 883
MwoI GCNNNNNNNGC 4 cut(s) 189, 215, 507, 569
NciI CCSGG 1 cut(s) 525
NcoI CCATGG 1 cut(s) 694
NdeII GATC 5 cut(s) 193, 298, 335, 365, 916
NheI GCTAGC 1 cut(s) 449
NlaIII CATG 4 cut(s) 424, 577, 698, 916
NlaIV GGNNCC 4 cut(s) 6, 631, 832, 970
NmeAIII GCCGAG 1 cut(s) 440
NmuCI GTSAC 3 cut(s) 659, 848, 979
PaqCI CACCTGC 2 cut(s) 394, 742
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 1 cut(s) 349
PfoI TCCNGGA 1 cut(s) 391
PkrI GCNGC 5 cut(s) 361, 512, 807, 830, 941
PleI GAGTC 2 cut(s) 407, 630
PpsI GAGTC 2 cut(s) 407, 630
Ppu21I YACGTR 1 cut(s) 484
PshAI GACNNNNGTC 1 cut(s) 657
PshBI ATTAAT 1 cut(s) 60
Psp6I CCWGG 6 cut(s) 88, 169, 391, 444, 681, 795
PspFI CCCAGC 2 cut(s) 876, 999
PspGI CCWGG 6 cut(s) 88, 169, 391, 444, 681, 795
PspN4I GGNNCC 4 cut(s) 6, 631, 832, 970
PspPI GGNCC 5 cut(s) 4, 207, 326, 698, 707
PsrI GAACNNNNNNTAC 2 cut(s) 464, 496
PstI CTGCAG 1 cut(s) 512
PsuI RGATCY 2 cut(s) 335, 916
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 2 cut(s) 259, 774
RsaNI GTAC 2 cut(s) 258, 773
SaqAI TTAA 3 cut(s) 60, 476, 594
SatI GCNGC 5 cut(s) 360, 511, 806, 829, 940
Sau3AI GATC 5 cut(s) 193, 298, 335, 365, 916
Sau96I GGNCC 5 cut(s) 4, 207, 326, 698, 707
SchI GAGTC 2 cut(s) 408, 630
ScrFI CCNGG 7 cut(s) 90, 171, 393, 446, 525, 683, 797
SduI GDGCHC 2 cut(s) 376, 559
SexAI ACCWGGT 2 cut(s) 169, 795
SfaNI GCATC 3 cut(s) 532, 659, 911
SfcI CTRYAG 1 cut(s) 508
SinI GGWCC 3 cut(s) 326, 698, 707
SmlI CTYRAG 2 cut(s) 593, 975
SmoI CTYRAG 2 cut(s) 593, 975
Sse9I AATT 5 cut(s) 57, 162, 577, 844, 946
SsiI CCGC 3 cut(s) 828, 940, 972
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 7 cut(s) 88, 169, 391, 444, 523, 681, 795
StyI CCWWGG 1 cut(s) 694
TaaI ACNGT 3 cut(s) 617, 765, 956
TaiI ACGT 2 cut(s) 486, 858
TaqI TCGA 1 cut(s) 347
TasI AATT 5 cut(s) 57, 162, 577, 844, 946
TauI GCSGC 2 cut(s) 831, 942
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 3 cut(s) 60, 476, 594
Tru9I TTAA 3 cut(s) 60, 476, 594
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 3 cut(s) 659, 848, 979
TseI GCWGC 3 cut(s) 359, 510, 805
Tsp45I GTSAC 3 cut(s) 659, 848, 979
TspDTI ATGAA 2 cut(s) 437, 590
TspGWI ACGGA 2 cut(s) 233, 678
TspRI CASTG 1 cut(s) 301
Vha464I CTTAAG 1 cut(s) 593
VneI GTGCAC 1 cut(s) 372
VpaK11BI GGWCC 3 cut(s) 326, 698, 707
VspI ATTAAT 1 cut(s) 60
XagI CCTNNNNNAGG 1 cut(s) 390
XapI RAATTY 1 cut(s) 577
XcmI CCANNNNNNNNNTGG 1 cut(s) 701
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.