Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009285

Physical Location & Seq

Genomic Coordinates Reverse (-)

17720132 .. 17723299

Gene Structure 3168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g22520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTGGCCAATCTGACCCTCATCTTTCTATCTTTTCCGCCGAAGAGGTTGAGTTCATGGCCGAAGACGAGTTGGTGGAGATTGTCCCCAATATGAGAATGGACAAACTCACTTTAATCTGTGGAGATTTTGGTCCATTCTTCCCTCAAATGCCTGCCCAAGTACCGCTGTGGTTGGCAATTGCGCTGAAGAAGAGGGGGAAATGTACAATTCGGCTCCCAGATTGGATGTCGGTCGAAAACTTGAGCCAGACTTTGGAAGCAGAGCGTGACTCTCAGGAATCCTTTCAAGTCCTACCTTTCCATTATGTTGAAATTTCAAGGCTTCTTTTTGATCATGCACGCGGTGATATTCCTGATGTATATACGGTGAGGTCTCTTATTGAAGACATTAGGGATGTAAGGTTTCATAAGGTTGAGACTAGCTTGGAATCATTTGAGGATGCTCGCTCTTCTGCAGTGAAGGTTAAAAATCTTTCGGCCATGGAAGTGAATTTAGTTCGTCCATTTGTCGGGAGAGCCTTACAGGCATTTTATAAGCATGGCAGTCCAGACCTGGTTCCAAATCCGGAGAGAATGCCTCCCAGACGACCACAAGCAACGGATAATGTACAAAGACGACCTCTGCGGAAACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000727 GO:0000811 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0031261 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901576 GO:1902292 GO:1902315 GO:1902969 GO:1902975 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

213

Amino Acids

24.38

Weight (kDa)

5.99

Isoelectric Point (pI)

68.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSF2_N	PF25005	14 - 71	6.2e-29	PSF2 N-terminal domain
Sld5	PF05916	76 - 171	1.4e-15	GINS complex protein helical bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12530 AT3G12530 AT3G12530 AT3G12530
fragaria_vesca	FvH4_7g22520
malus_domestica	MD01G1134500.v1.1 MD07G1199100.v1.1
prunus_persica	Prupe.2G235900_v2.0.a1 Prupe.2G235900_v2.0.a1
pyrus_communis	pycom01g15520 pycom07g18620
rosa_chinensis	RchiOBHm_Chr1g0367201
rosa_laevigata	RLG00000027292
rosa_multiflora	Rmu_sc0006367.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289550
rosa_rugosa	Rorug01G0335100 Rorug01G0335200
rosa_samantha	Rh1AG342000 Rh1BG302400 Rh1CG318800 Rh1DG334900
rosa_wichuraiana	Rw1G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AccB7I	CCANNNNNTGG	1 cut(s)	256
AccII	CGCG	1 cut(s)	345
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	4 cut(s)	39, 167, 345, 628
AcoI	YGGCCR	3 cut(s)	7, 60, 480
AcsI	RAATTY	2 cut(s)	315, 493
AcuI	CTGAAG	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	3 cut(s)	165, 208, 612
AfiI	CCNNNNNNNGG	2 cut(s)	256, 512
AgsI	TTSAA	4 cut(s)	290, 314, 321, 386
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	1 cut(s)	426
AluI	AGCT	1 cut(s)	426
Alw26I	GTCTC	2 cut(s)	381, 413
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	3 cut(s)	7, 60, 480
ApoI	RAATTY	2 cut(s)	315, 493
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	359, 382
AvaII	GGWCC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	72, 393
BciT130I	CCWGG	1 cut(s)	557
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	381, 413
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	527
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	218, 561
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	2 cut(s)	72, 393
BplI	GAGNNNNNCTC	4 cut(s)	257, 289, 565, 597
BpuEI	CTTGAG	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	483
BsaWI	WCCGGW	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 512
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	3 cut(s)	234, 403, 448
BseLI	CCNNNNNNNGG	2 cut(s)	256, 512
BseMII	CTCAG	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	9, 62, 482
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	256, 512
BsmAI	GTCTC	2 cut(s)	381, 413
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	3 cut(s)	9, 62, 482
Bso31I	GGTCTC	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	568
Bsp1407I	TGTACA	2 cut(s)	206, 610
Bsp143I	GATC	1 cut(s)	334
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	4 cut(s)	39, 167, 345, 628
BspANI	GGCC	3 cut(s)	9, 62, 482
BspCNI	CTCAG	1 cut(s)	289
BspEI	TCCGGA	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	218, 561
BspMAI	CTGCAG	1 cut(s)	460
BspQI	GCTCTTC	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	381
BsrGI	TGTACA	2 cut(s)	206, 610
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	2 cut(s)	370, 636
Bst6I	CTCTTC	3 cut(s)	39, 188, 457
BstAUI	TGTACA	2 cut(s)	206, 610
BstC8I	GCNNGC	4 cut(s)	7, 156, 343, 448
BstDEI	CTNAG	1 cut(s)	276
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	234, 403, 448
BstFNI	CGCG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	2 cut(s)	381, 413
BstMBI	GATC	1 cut(s)	334
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	555
BstSFI	CTRYAG	1 cut(s)	456
BstUI	CGCG	1 cut(s)	345
BstV2I	GAAGAC	2 cut(s)	72, 393
BsuRI	GGCC	3 cut(s)	9, 62, 482
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	3 cut(s)	234, 403, 448
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	4 cut(s)	7, 156, 343, 448
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	134
CsiI	ACCWGGT	1 cut(s)	555
Csp6I	GTAC	3 cut(s)	164, 207, 611
CviAII	CATG	4 cut(s)	58, 338, 484, 542
CviJI	RGCY	9 cut(s)	5, 9, 62, 217, 249, 325, 426, 482, 521
CviKI_1	RGCY	9 cut(s)	5, 9, 62, 217, 249, 325, 426, 482, 521
CviQI	GTAC	3 cut(s)	164, 207, 611
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
DraIII	CACNNNGTG	1 cut(s)	347
EaeI	YGGCCR	3 cut(s)	7, 60, 480
Eam1104I	CTCTTC	3 cut(s)	39, 188, 457
EarI	CTCTTC	3 cut(s)	39, 188, 457
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	4 cut(s)	61, 341, 487, 545
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	4 cut(s)	57, 337, 483, 541
FbaI	TGATCA	1 cut(s)	334
FokI	GGATG	3 cut(s)	241, 410, 455
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	9, 62, 482
HapII	CCGG	1 cut(s)	569
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	4 cut(s)	61, 341, 487, 545
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	3 cut(s)	272, 281, 431
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	2 cut(s)	359, 382
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	5 cut(s)	278, 356, 514, 551, 569
HpyAV	CCTTC	1 cut(s)	457
HpyCH4III	ACNGT	2 cut(s)	370, 636
HpyCH4V	TGCA	2 cut(s)	341, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	61, 341, 487, 545
HspAI	GCGC	1 cut(s)	185
Kpn2I	TCCGGA	1 cut(s)	568
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	334
LguI	GCTCTTC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	222
LweI	GCATC	1 cut(s)	433
MabI	ACCWGGT	1 cut(s)	555
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	7 cut(s)	56, 77, 133, 202, 205, 398, 444
MfeI	CAATTG	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	9
MluCI	AATT	4 cut(s)	180, 210, 315, 493
MluNI	TGGCCA	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	8 cut(s)	30, 40, 156, 189, 366, 433, 591, 633
Mox20I	TGGCCA	1 cut(s)	9
MroI	TCCGGA	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	9
MseI	TTAA	2 cut(s)	116, 468
MslI	CAYNNNNRTG	1 cut(s)	488
Msp20I	TGGCCA	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	1 cut(s)	557
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	557
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	527
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	4 cut(s)	61, 341, 487, 545
NlaIV	GGNNCC	2 cut(s)	218, 561
NmuCI	GTSAC	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	457
PctI	GAATGC	1 cut(s)	582
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	281, 431
PflMI	CCANNNNNTGG	1 cut(s)	256
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PsiI	TTATAA	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	2 cut(s)	218, 561
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	460
RsaI	GTAC	3 cut(s)	165, 208, 612
RsaNI	GTAC	3 cut(s)	164, 207, 611
RseI	CAYNNNNRTG	1 cut(s)	488
SapI	GCTCTTC	1 cut(s)	457
SaqAI	TTAA	2 cut(s)	116, 468
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	557
SetI	ASST	9 cut(s)	51, 301, 377, 407, 417, 428, 468, 558, 625
SexAI	ACCWGGT	1 cut(s)	555
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	4 cut(s)	180, 210, 315, 493
SsiI	CCGC	4 cut(s)	39, 167, 345, 628
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	370, 636
TaqI	TCGA	1 cut(s)	237
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	4 cut(s)	180, 210, 315, 493
TatI	WGTACW	2 cut(s)	206, 610
TfiI	GAWTC	2 cut(s)	281, 431
Tru1I	TTAA	2 cut(s)	116, 468
Tru9I	TTAA	2 cut(s)	116, 468
TscAI	CASTG	1 cut(s)	465
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	46, 398
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	1 cut(s)	465
Van91I	CCANNNNNTGG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	2 cut(s)	315, 493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.