Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009285

Physical Location & Seq

Genomic Coordinates Reverse (-)

43904152 .. 43906677

Gene Structure 2526 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG302400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCCGGCCAATCTGACCCTAACCTTTCTATCTTTTCCGCAGAAGAGGTTGAGTTTATGGCTGAGGATGAGTTGGTGGAGATTGTGCCCAATATGAGAATGGATAAACTCACTCTAATCTGTGGAGATTATGGTCCATTCTTCCCTCAAATGCCTGCGCAAGTACCGCTGTGGCTGGCAATTGCGTTGAAGAAGAGGGGGAAATGTACAATTCGACTCCCGGATTGGATGTCGGTCGAAAACTTGAGCCAAACTTTGGAAGCGGAGCGTGACTCTCAGGAATCCTTTCAAGTCCTACCTTTCCATTATGTCGAAATTTCAAGGCTTCTTTTTGATCATGCACGCGGTGACATTCCTGATGTATATACGGTGAGGTCTCTTATTGAAGACATTAGGGATGTAAGGTTTCATAAGGTCGAGACTAGCTTAGAATCATTTGAGGATGCTCGCTCTTCTGCAGTGAAGGTTAAAAATCTGTCCGCAATGGAAGTGAATTTAGTTCGTCCATTTGTTGGGAGAGCCTTACAGGCATTTTATAAGCATGGCAGTCCAGAGCTGGTTCCAAATCCAGAGAGAATGCCTCCCAGACGGCCACAAGCAACTGATAACGTCCAAAGACGCCCTCTGCGGAAACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000727 GO:0000811 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0031261 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901576 GO:1902292 GO:1902315 GO:1902969 GO:1902975 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

212

Amino Acids

24.38

Weight (kDa)

5.88

Isoelectric Point (pI)

69.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSF2_N	PF25005	14 - 71	3.3e-29	PSF2 N-terminal domain
Sld5	PF05916	76 - 171	1.4e-15	GINS complex protein helical bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12530 AT3G12530 AT3G12530 AT3G12530
fragaria_vesca	FvH4_7g22520
malus_domestica	MD01G1134500.v1.1 MD07G1199100.v1.1
prunus_persica	Prupe.2G235900_v2.0.a1 Prupe.2G235900_v2.0.a1
pyrus_communis	pycom01g15520 pycom07g18620
rosa_chinensis	RchiOBHm_Chr1g0367201
rosa_laevigata	RLG00000027292
rosa_multiflora	Rmu_sc0006367.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289550
rosa_rugosa	Rorug01G0335100 Rorug01G0335200
rosa_samantha	Rh1AG342000 Rh1BG302400 Rh1CG318800 Rh1DG334900
rosa_wichuraiana	Rw1G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
Acc16I	TGCGCA	1 cut(s)	159
AccB7I	CCANNNNNTGG	2 cut(s)	256, 512
AccII	CGCG	1 cut(s)	345
AciI	CCGC	6 cut(s)	39, 167, 263, 345, 480, 628
AcoI	YGGCCR	3 cut(s)	3, 7, 590
AcsI	RAATTY	2 cut(s)	315, 493
AcyI	GRCGYC	1 cut(s)	619
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	165, 208
AfiI	CCNNNNNNNGG	2 cut(s)	256, 512
AgsI	TTSAA	4 cut(s)	190, 290, 321, 386
AluBI	AGCT	2 cut(s)	426, 556
AluI	AGCT	2 cut(s)	426, 556
Alw26I	GTCTC	2 cut(s)	381, 413
AoxI	GGCC	3 cut(s)	3, 7, 590
ApoI	RAATTY	2 cut(s)	315, 493
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	359, 382
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	393
BbvCI	CCTCAGC	1 cut(s)	63
BceAI	ACGGC	1 cut(s)	605
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	2 cut(s)	381, 413
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	527
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	393
BplI	GAGNNNNNCTC	4 cut(s)	257, 289, 565, 597
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	619
BsaI	GGTCTC	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 512
Bse118I	RCCGGY	1 cut(s)	5
Bse3DI	GCAATG	1 cut(s)	489
BseGI	GGATG	4 cut(s)	73, 234, 403, 448
BseLI	CCNNNNNNNGG	2 cut(s)	256, 512
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	2 cut(s)	54, 290
BseSI	GKGCMC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	5, 9, 592
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	6, 221
BslI	CCNNNNNNNGG	2 cut(s)	256, 512
BsmAI	GTCTC	2 cut(s)	381, 413
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	3 cut(s)	5, 9, 592
Bso31I	GGTCTC	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp1407I	TGTACA	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	6 cut(s)	39, 167, 263, 345, 480, 628
BspANI	GGCC	3 cut(s)	5, 9, 592
BspCNI	CTCAG	2 cut(s)	55, 289
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	561
BspMAI	CTGCAG	1 cut(s)	460
BspQI	GCTCTTC	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	1 cut(s)	334
BssNI	GRCGYC	1 cut(s)	619
Bst4CI	ACNGT	2 cut(s)	370, 636
Bst6I	CTCTTC	3 cut(s)	39, 188, 457
BstACI	GRCGYC	1 cut(s)	619
BstAUI	TGTACA	1 cut(s)	206
BstC8I	GCNNGC	5 cut(s)	7, 156, 177, 343, 448
BstDEI	CTNAG	3 cut(s)	63, 276, 427
BstF5I	GGATG	4 cut(s)	73, 234, 403, 448
BstFNI	CGCG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	2 cut(s)	381, 413
BstMBI	GATC	1 cut(s)	334
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 527
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	90
BstUI	CGCG	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	5, 9, 592
BtsCI	GGATG	4 cut(s)	73, 234, 403, 448
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	5 cut(s)	7, 156, 177, 343, 448
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	1 cut(s)	627
Csp6I	GTAC	2 cut(s)	164, 207
CviAII	CATG	2 cut(s)	338, 542
CviQI	GTAC	2 cut(s)	164, 207
DdeI	CTNAG	3 cut(s)	63, 276, 427
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
DraIII	CACNNNGTG	1 cut(s)	347
EaeI	YGGCCR	3 cut(s)	3, 7, 590
Eam1104I	CTCTTC	3 cut(s)	39, 188, 457
EarI	CTCTTC	3 cut(s)	39, 188, 457
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	134
FaeI	CATG	2 cut(s)	341, 545
FatI	CATG	2 cut(s)	337, 541
FbaI	TGATCA	1 cut(s)	334
FokI	GGATG	4 cut(s)	80, 241, 410, 455
FseI	GGCCGGCC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	423
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	5, 9, 592
HapII	CCGG	2 cut(s)	6, 221
HgaI	GACGC	1 cut(s)	627
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	619
Hin1II	CATG	2 cut(s)	341, 545
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	4 cut(s)	216, 272, 281, 431
HpaII	CCGG	2 cut(s)	6, 221
HphI	GGTGA	2 cut(s)	359, 382
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	5 cut(s)	278, 356, 418, 551, 569
HpyAV	CCTTC	1 cut(s)	457
HpyCH4III	ACNGT	2 cut(s)	370, 636
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	2 cut(s)	341, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 527
HpyF3I	CTNAG	3 cut(s)	63, 276, 427
HpySE526I	ACGT	1 cut(s)	609
Hsp92I	GRCGYC	1 cut(s)	619
Hsp92II	CATG	2 cut(s)	341, 545
HspAI	GCGC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	334
LguI	GCTCTTC	1 cut(s)	457
LmnI	GCTCC	1 cut(s)	265
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	2 cut(s)	269, 347
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	6 cut(s)	56, 133, 202, 205, 398, 444
MfeI	CAATTG	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	4 cut(s)	180, 210, 315, 493
MlyI	GAGTC	2 cut(s)	210, 266
MnlI	CCTC	8 cut(s)	40, 58, 156, 189, 366, 433, 591, 633
MroNI	GCCGGC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	2 cut(s)	6, 221
MspR9I	CCNGG	1 cut(s)	221
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	582
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	166, 527
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	1 cut(s)	334
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	341, 545
NlaIV	GGNNCC	1 cut(s)	561
NmuCI	GTSAC	2 cut(s)	269, 347
NsbI	TGCGCA	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	457
PctI	GAATGC	1 cut(s)	582
PdiI	GCCGGC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	281, 431
PflMI	CCANNNNNTGG	2 cut(s)	256, 512
PfoI	TCCNGGA	1 cut(s)	219
PleI	GAGTC	2 cut(s)	210, 266
PpsI	GAGTC	2 cut(s)	210, 266
PsiI	TTATAA	1 cut(s)	537
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	460
RigI	GGCCGGCC	1 cut(s)	9
RsaI	GTAC	2 cut(s)	165, 208
RsaNI	GTAC	2 cut(s)	164, 207
SapI	GCTCTTC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	468
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	2 cut(s)	210, 266
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	4 cut(s)	180, 210, 315, 493
SsiI	CCGC	6 cut(s)	39, 167, 263, 345, 480, 628
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	370, 636
TaiI	ACGT	1 cut(s)	612
TaqI	TCGA	4 cut(s)	214, 237, 312, 417
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	4 cut(s)	180, 210, 315, 493
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	281, 431
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	465
TseFI	GTSAC	2 cut(s)	269, 347
Tsp45I	GTSAC	2 cut(s)	269, 347
TspDTI	ATGAA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	465
Van91I	CCANNNNNTGG	2 cut(s)	256, 512
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	2 cut(s)	315, 493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.