Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009285

Physical Location & Seq

Genomic Coordinates Forward (+)

10150800 .. 10155755

Gene Structure 4956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCCGGCCAATCTGACCCTAACCTCTCTATCTTTTCTGCAGAAGAGGTTGAGTTTATGGCTGAAGATGAGTTGGTGGAGATTGTGCCCAATATGAGAATGGATAAACTCACTCTAATCTGTGGAGATTATGGTCCATTCTTCCCTCAAATGCCTGCCCAAGTACCGCTGTGGCTGGCAATTGCGTTGAAGAAGAGGGGAAATGTACAATTCGACTCCCGGATTGGATGTCGGTCGGTGAGGTCTCTTATTGAAGACATTAGGGATGTAAGGTTTCATAAGGTCGAGACTAGCTTAGAATCATTTGAGGATGCTCGCTCTTCTGCAGTGAAGGTTAAAAATCTGTCCGCAATGGAAGTGAATTTAGTTCGTCCATTTGTTGGGAGAGCCTTACAGGCATTTTATAAGCATGGCAGTCCAGAGCTGGTGCCAAATCCAGAGAGAATGCCTCCCAGACGGCCACAAGCAACTGATAACGTCCAAAGAGATGGACGTTTGGATATTCCTCGGTGGCCCAAGCAGATTGAGCCAGAACATGCCTCATGTTCCCTCTGTCTCCACTCTTTATCAAAGAGTGGTAAACTAGTTCCTCCACTGGTAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000727 GO:0000811 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0031261 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901576 GO:1902292 GO:1902315 GO:1902969 GO:1902975 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

201

Amino Acids

22.67

Weight (kDa)

6.44

Isoelectric Point (pI)

65.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSF2_N	PF25005	14 - 68	4.9e-26	PSF2 N-terminal domain
Sld5	PF05916	77 - 127	1.6e-07	GINS complex protein helical bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12530 AT3G12530 AT3G12530 AT3G12530
fragaria_vesca	FvH4_7g22520
malus_domestica	MD01G1134500.v1.1 MD07G1199100.v1.1
prunus_persica	Prupe.2G235900_v2.0.a1 Prupe.2G235900_v2.0.a1
pyrus_communis	pycom01g15520 pycom07g18620
rosa_chinensis	RchiOBHm_Chr1g0367201
rosa_laevigata	RLG00000027292
rosa_multiflora	Rmu_sc0006367.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289550
rosa_rugosa	Rorug01G0335100 Rorug01G0335200
rosa_samantha	Rh1AG342000 Rh1BG302400 Rh1CG318800 Rh1DG334900
rosa_wichuraiana	Rw1G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
AccB1I	GGYRCC	1 cut(s)	427
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	2 cut(s)	167, 348
AcoI	YGGCCR	3 cut(s)	3, 7, 458
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	84
AfaI	GTAC	2 cut(s)	165, 207
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	190, 254
AhlI	ACTAGT	1 cut(s)	583
AluBI	AGCT	2 cut(s)	294, 424
AluI	AGCT	2 cut(s)	294, 424
Alw26I	GTCTC	3 cut(s)	249, 281, 560
AoxI	GGCC	4 cut(s)	3, 7, 458, 512
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	134, 513
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	261
BccI	CCATC	1 cut(s)	482
BceAI	ACGGC	1 cut(s)	473
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	249, 281, 560
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	2 cut(s)	291, 584
BfmI	CTRYAG	2 cut(s)	39, 324
BglI	GCCNNNNNGGC	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	134, 513
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	220
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	261
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
BpuMI	CCSGG	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	600
Bse3DI	GCAATG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	506
BseGI	GGATG	3 cut(s)	233, 271, 316
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	600
BseSI	GKGCMC	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	4 cut(s)	5, 9, 460, 514
BshNI	GGYRCC	1 cut(s)	427
BsiEI	CGRYCG	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	6, 220
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	3 cut(s)	249, 281, 560
BsmI	GAATGC	1 cut(s)	450
BsnI	GGCC	4 cut(s)	5, 9, 460, 514
Bso31I	GGTCTC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp1407I	TGTACA	1 cut(s)	205
BspACI	CCGC	2 cut(s)	167, 348
BspANI	GGCC	4 cut(s)	5, 9, 460, 514
BspLI	GGNNCC	1 cut(s)	429
BspMAI	CTGCAG	2 cut(s)	43, 328
BspQI	GCTCTTC	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	506
Bst6I	CTCTTC	3 cut(s)	39, 188, 325
BstAUI	TGTACA	1 cut(s)	205
BstC8I	GCNNGC	4 cut(s)	7, 156, 177, 316
BstDEI	CTNAG	1 cut(s)	295
BstF5I	GGATG	3 cut(s)	233, 271, 316
BstMAI	GTCTC	3 cut(s)	249, 281, 560
BstMCI	CGRYCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 526
BstNSI	RCATGY	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	2 cut(s)	39, 324
BstSLI	GKGCMC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	488
BsuRI	GGCC	4 cut(s)	5, 9, 460, 514
BtsCI	GGATG	3 cut(s)	233, 271, 316
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	333, 593
Cac8I	GCNNGC	4 cut(s)	7, 156, 177, 316
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	134, 513
Csp6I	GTAC	2 cut(s)	164, 206
CviAII	CATG	3 cut(s)	410, 536, 543
CviQI	GTAC	2 cut(s)	164, 206
DdeI	CTNAG	1 cut(s)	295
EaeI	YGGCCR	3 cut(s)	3, 7, 458
Eam1104I	CTCTTC	3 cut(s)	39, 188, 325
EarI	CTCTTC	3 cut(s)	39, 188, 325
Eco31I	GGTCTC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	84
FaeI	CATG	3 cut(s)	413, 539, 546
FaiI	YATR	8 cut(s)	59, 95, 132, 279, 405, 411, 537, 544
FatI	CATG	3 cut(s)	409, 535, 542
FblI	GTMKAC	1 cut(s)	600
FokI	GGATG	3 cut(s)	240, 278, 323
FseI	GGCCGGCC	1 cut(s)	9
FspBI	CTAG	2 cut(s)	291, 584
HaeIII	GGCC	4 cut(s)	5, 9, 460, 514
HapII	CCGG	2 cut(s)	6, 220
Hin1II	CATG	3 cut(s)	413, 539, 546
HinfI	GANTC	2 cut(s)	215, 299
HpaII	CCGG	2 cut(s)	6, 220
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	581, 601
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	3 cut(s)	286, 419, 437
Hpy8I	GTNNAC	2 cut(s)	581, 601
HpyAV	CCTTC	1 cut(s)	325
HpyCH4IV	ACGT	2 cut(s)	477, 493
HpyCH4V	TGCA	2 cut(s)	41, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 526
HpyF3I	CTNAG	1 cut(s)	295
HpySE526I	ACGT	2 cut(s)	477, 493
Hsp92II	CATG	3 cut(s)	413, 539, 546
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
LguI	GCTCTTC	1 cut(s)	325
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	291, 584
MaeII	ACGT	2 cut(s)	477, 493
MboII	GAAGA	7 cut(s)	56, 77, 133, 202, 205, 266, 312
MfeI	CAATTG	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	3 cut(s)	180, 209, 361
MlyI	GAGTC	1 cut(s)	209
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	2 cut(s)	6, 220
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	395, 526
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	1 cut(s)	220
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	3 cut(s)	413, 539, 546
NlaIV	GGNNCC	1 cut(s)	429
NspI	RCATGY	1 cut(s)	539
PciSI	GCTCTTC	1 cut(s)	325
PctI	GAATGC	1 cut(s)	450
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	218
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	2 cut(s)	134, 513
PstI	CTGCAG	2 cut(s)	43, 328
RigI	GGCCGGCC	1 cut(s)	9
RsaI	GTAC	2 cut(s)	165, 207
RsaNI	GTAC	2 cut(s)	164, 206
SapI	GCTCTTC	1 cut(s)	325
SaqAI	TTAA	1 cut(s)	336
Sau96I	GGNCC	2 cut(s)	134, 513
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	2 cut(s)	39, 324
SinI	GGWCC	1 cut(s)	134
SpeI	ACTAGT	1 cut(s)	583
Sse9I	AATT	3 cut(s)	180, 209, 361
SsiI	CCGC	2 cut(s)	167, 348
SspMI	CTAG	2 cut(s)	291, 584
StyD4I	CCNGG	1 cut(s)	218
TaiI	ACGT	2 cut(s)	480, 496
TaqI	TCGA	2 cut(s)	213, 285
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	3 cut(s)	180, 209, 361
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	2 cut(s)	333, 600
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	2 cut(s)	333, 600
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	600
XspI	CTAG	2 cut(s)	291, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.