Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009285

Physical Location & Seq

Genomic Coordinates Reverse (-)

24410886 .. 24413446

Gene Structure 2561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1134500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAGGCCAAACCGATCCCAGCCTGTCTATCTTTTCCGGCGAAGAGGTCGAGTTTATGGCCGAAGACGAAATGGTGGAGATCGTTCCCAATATGCGAATGGATCCTCTCAACATGCTCTGTGGAGATTTTGGTCCATTCTACCCGCAAATGGCAACCCAAGTACCGTTGTGGCTGGCGATTGCTATGAAGAAGAGAGGGAAATGCACAATTCGGCCCCCAGAGTGGATGTCTATCGAAAACTTGACTCGGATTTTGGAAGCAGAGCGTGATTCTCAGGCAGCATTTCAAGTTCTACCTTTCCATTATGTTGAAATCTCTAGCCTTCTTTTTGAATATGCACCTGACGACATTCCTGACATATATATGGTGAGGTCTCTTATTAACGACATAAGGGATGTAAGGTTTCATAAGGTTGAGACTAGCTTAGAATCATTTGAGGAGGCTCACTCTTCTGCAGTGATGGTCAAGGATCTATCTGCCATGGAAGTGAATTTAGTTCGCCCATTTGTTGGGAGAGCCTTACAGGCATTTTACAAGCATGGCAGTCCAGAGCTGGTTCCAAATCCAGATGGAATGTCTGCCAGACGGCTACAAGCAACTGATAACATACCAAGACGCCCTCTGCGGAGACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000727 GO:0000811 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0031261 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901576 GO:1902292 GO:1902315 GO:1902969 GO:1902975 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

213

Amino Acids

24.26

Weight (kDa)

5.09

Isoelectric Point (pI)

72.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PSF2_N	PF25005	15 - 71	7.8e-27	PSF2 N-terminal domain
Sld5	PF05916	76 - 171	3.6e-14	GINS complex protein helical bundle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12530 AT3G12530 AT3G12530 AT3G12530
fragaria_vesca	FvH4_7g22520
malus_domestica	MD01G1134500.v1.1 MD07G1199100.v1.1
prunus_persica	Prupe.2G235900_v2.0.a1 Prupe.2G235900_v2.0.a1
pyrus_communis	pycom01g15520 pycom07g18620
rosa_chinensis	RchiOBHm_Chr1g0367201
rosa_laevigata	RLG00000027292
rosa_multiflora	Rmu_sc0006367.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289550
rosa_rugosa	Rorug01G0335100 Rorug01G0335200
rosa_samantha	Rh1AG342000 Rh1BG302400 Rh1CG318800 Rh1DG334900
rosa_wichuraiana	Rw1G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	512
AciI	CCGC	2 cut(s)	146, 628
AclWI	GGATC	4 cut(s)	11, 98, 111, 480
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	493
AcyI	GRCGYC	1 cut(s)	619
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	3 cut(s)	151, 225, 512
AgsI	TTSAA	3 cut(s)	290, 314, 335
AluBI	AGCT	2 cut(s)	426, 556
AluI	AGCT	2 cut(s)	426, 556
Alw26I	GTCTC	3 cut(s)	381, 413, 625
AlwI	GGATC	4 cut(s)	11, 98, 111, 480
AoxI	GGCC	3 cut(s)	7, 60, 215
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	493
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AspS9I	GGNCC	2 cut(s)	134, 216
AsuHPI	GGTGA	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	134
BaeI	ACNNNNGTAYC	2 cut(s)	147, 180
BamHI	GGATCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	2 cut(s)	457, 566
BceAI	ACGGC	1 cut(s)	605
BcoDI	GTCTC	3 cut(s)	381, 413, 625
BfaI	CTAG	2 cut(s)	321, 423
BfmI	CTRYAG	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	527
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	134, 216
BmiI	GGNNCC	3 cut(s)	105, 218, 561
BpiI	GAAGAC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
BsaBI	GATNNNNATC	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	619
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	483
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 225, 512
Bse8I	GATNNNNATC	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	2 cut(s)	234, 403
BseJI	GATNNNNATC	1 cut(s)	233
BseLI	CCNNNNNNNGG	3 cut(s)	151, 225, 512
BseMII	CTCAG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	20
BshFI	GGCC	3 cut(s)	9, 62, 217
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	151, 225, 512
BsmAI	GTCTC	3 cut(s)	381, 413, 625
BsmBI	CGTCTC	1 cut(s)	625
BsnI	GGCC	3 cut(s)	9, 62, 217
Bso31I	GGTCTC	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	16, 81, 103, 472
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	2 cut(s)	146, 628
BspANI	GGCC	3 cut(s)	9, 62, 217
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	105, 218, 561
BspMAI	CTGCAG	1 cut(s)	460
BspPI	GGATC	4 cut(s)	11, 98, 111, 480
BspTNI	GGTCTC	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	4 cut(s)	16, 81, 103, 472
BssNI	GRCGYC	1 cut(s)	619
BssT1I	CCWWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	168, 636
Bst6I	CTCTTC	3 cut(s)	39, 188, 457
BstACI	GRCGYC	1 cut(s)	619
BstC8I	GCNNGC	2 cut(s)	7, 177
BstDEI	CTNAG	2 cut(s)	276, 427
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	234, 403
BstKTI	GATC	4 cut(s)	19, 84, 106, 475
BstMAI	GTCTC	3 cut(s)	381, 413, 625
BstMBI	GATC	4 cut(s)	16, 81, 103, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstNSI	RCATGY	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	103, 472
BstYI	RGATCY	2 cut(s)	103, 472
BsuRI	GGCC	3 cut(s)	9, 62, 217
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	234, 403
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	7, 177
Cfr13I	GGNCC	2 cut(s)	134, 216
CseI	GACGC	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	3 cut(s)	115, 484, 542
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	276, 427
DpnI	GATC	4 cut(s)	18, 83, 105, 474
DpnII	GATC	4 cut(s)	16, 81, 103, 472
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	3 cut(s)	39, 188, 457
EarI	CTCTTC	3 cut(s)	39, 188, 457
Eco130I	CCWWGG	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	625
FaeI	CATG	3 cut(s)	118, 487, 545
FatI	CATG	3 cut(s)	114, 483, 541
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	2 cut(s)	241, 410
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	2 cut(s)	321, 423
GluI	GCNGC	1 cut(s)	282
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	3 cut(s)	9, 62, 217
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	627
Hin1I	GRCGYC	1 cut(s)	619
Hin1II	CATG	3 cut(s)	118, 487, 545
HinfI	GANTC	3 cut(s)	247, 272, 431
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	3 cut(s)	356, 551, 569
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	2 cut(s)	168, 636
HpyCH4V	TGCA	3 cut(s)	207, 341, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
HpyF3I	CTNAG	2 cut(s)	276, 427
Hsp92I	GRCGYC	1 cut(s)	619
Hsp92II	CATG	3 cut(s)	118, 487, 545
Kzo9I	GATC	4 cut(s)	16, 81, 103, 472
Lsp1109I	GCAGC	1 cut(s)	293
MaeI	CTAG	2 cut(s)	321, 423
MalI	GATC	4 cut(s)	18, 83, 105, 474
MboI	GATC	4 cut(s)	16, 81, 103, 472
MboII	GAAGA	5 cut(s)	56, 77, 202, 205, 444
MflI	RGATCY	2 cut(s)	103, 472
MluCI	AATT	2 cut(s)	210, 493
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	7 cut(s)	40, 117, 191, 366, 433, 436, 633
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	2 cut(s)	365, 488
MspI	CCGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	527
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	4 cut(s)	16, 81, 103, 472
NlaIII	CATG	3 cut(s)	118, 487, 545
NlaIV	GGNNCC	3 cut(s)	105, 218, 561
NspI	RCATGY	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	272, 431
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	20
PspN4I	GGNNCC	3 cut(s)	105, 218, 561
PspPI	GGNCC	2 cut(s)	134, 216
PstI	CTGCAG	1 cut(s)	460
PsuI	RGATCY	2 cut(s)	103, 472
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	2 cut(s)	365, 488
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	4 cut(s)	16, 81, 103, 472
Sau96I	GGNCC	2 cut(s)	134, 216
SchI	GAGTC	1 cut(s)	241
SetI	ASST	8 cut(s)	51, 301, 346, 377, 407, 417, 428, 558
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	2 cut(s)	365, 488
Sse9I	AATT	2 cut(s)	210, 493
SsiI	CCGC	2 cut(s)	146, 628
SspMI	CTAG	2 cut(s)	321, 423
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	168, 636
TaqI	TCGA	2 cut(s)	51, 237
TasI	AATT	2 cut(s)	210, 493
TfiI	GAWTC	2 cut(s)	272, 431
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	1 cut(s)	465
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	203, 398
TspRI	CASTG	1 cut(s)	465
Van91I	CCANNNNNTGG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	493
XceI	RCATGY	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XspI	CTAG	2 cut(s)	321, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.