Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009285

Physical Location & Seq

Genomic Coordinates Reverse (-)

25764645 .. 25768133

Gene Structure 3489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G235900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCCGGCCAATCTGATCCAAATGTTTCTATATTTTCCGGAGAAGAGGTTGAGTTTATGGCTGAAGATGAAATGGTGGAGATCGTCCCCAATATGAGAATGGAGCCTCTCAATATGCTCTGTGGAGATTTTGGTCCATTCTACCCACAAATGGCTACCCAAGTACCGATGTGGCTGGCAATTGCTCTGAAGAAGAGAGGGAAATGTACAATTCGACCCCCAGAGTGGATGTCCGTCGAAAACTTGACTCAGATTTTGGAAGCGGAGCGGGAGTCTCAGGCAGCATTTCAAGTCCTGCCTTTCCATTATGTTGAAATCTCAAGCCTTCTTTTTGATTATGCATCTGGTGACATTCCTGACCTATATATGGTGAGGTCTCTTATTAATGACATAAGGGATGCGAGGTTTCTTAAGGTCGAAAGTAGTTTAGAATCATTCGAGGATGCTCGCTCTTCTGCAGTGAAGGTCAAAAATCTATCTGCAATGGAAGTGAATGTTGTTCGCCCATTTGTTGGGAGAGCGTTACAGTCCTTTTATAAGCATGGCAGTCCAGATTTGGTTCCAAATCCAGAGGCAATGTCTGCCAGACGGCCACAAGCAACTGATAACATACAAAGACGCCCGCTGCGGAAACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000727 GO:0000811 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006270 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0031261 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0050896 GO:0051716 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901576 GO:1902292 GO:1902315 GO:1902969 GO:1902975 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

213

Amino Acids

24.11

Weight (kDa)

5.22

Isoelectric Point (pI)

71.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12530 AT3G12530 AT3G12530 AT3G12530
fragaria_vesca	FvH4_7g22520
malus_domestica	MD01G1134500.v1.1 MD07G1199100.v1.1
prunus_persica	Prupe.2G235900_v2.0.a1 Prupe.2G235900_v2.0.a1
pyrus_communis	pycom01g15520 pycom07g18620
rosa_chinensis	RchiOBHm_Chr1g0367201
rosa_laevigata	RLG00000027292
rosa_multiflora	Rmu_sc0006367.1_g000002
rosa_roxburghii	Rroxscaffold_4G00289550
rosa_rugosa	Rorug01G0335100 Rorug01G0335200
rosa_samantha	Rh1AG342000 Rh1BG302400 Rh1CG318800 Rh1DG334900
rosa_wichuraiana	Rw1G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AccB7I	CCANNNNNTGG	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	4 cut(s)	263, 268, 623, 628
AclWI	GGATC	1 cut(s)	11
AcoI	YGGCCR	3 cut(s)	3, 7, 590
AcuI	CTGAAG	2 cut(s)	84, 209
AcyI	GRCGYC	1 cut(s)	619
AfaI	GTAC	2 cut(s)	165, 208
AfiI	CCNNNNNNNGG	4 cut(s)	151, 225, 367, 512
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	290, 314
Alw26I	GTCTC	2 cut(s)	279, 381
AlwI	GGATC	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	38
AoxI	GGCC	3 cut(s)	3, 7, 590
ApeKI	GCWGC	2 cut(s)	281, 625
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AseI	ATTAAT	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	359, 382
AvaII	GGWCC	1 cut(s)	134
BaeI	ACNNNNGTAYC	2 cut(s)	147, 180
BbvI	GCAGC	2 cut(s)	293, 612
BceAI	ACGGC	1 cut(s)	605
BcoDI	GTCTC	2 cut(s)	279, 381
BfmI	CTRYAG	1 cut(s)	456
BfrI	CTTAAG	1 cut(s)	410
BisI	GCNGC	2 cut(s)	282, 626
BlsI	GCNGC	2 cut(s)	283, 627
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	105, 561
BmsI	GCATC	3 cut(s)	350, 388, 433
BpuEI	CTTGAG	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	619
BsaI	GGTCTC	1 cut(s)	381
BsaWI	WCCGGW	1 cut(s)	38
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 257, 287
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 225, 367, 512
Bse118I	RCCGGY	1 cut(s)	5
Bse3DI	GCAATG	2 cut(s)	489, 582
BseAI	TCCGGA	1 cut(s)	38
BseGI	GGATG	3 cut(s)	234, 403, 448
BseLI	CCNNNNNNNGG	4 cut(s)	151, 225, 367, 512
BseMI	GCAATG	2 cut(s)	489, 582
BseMII	CTCAG	2 cut(s)	263, 290
BseXI	GCAGC	2 cut(s)	293, 612
BshFI	GGCC	3 cut(s)	5, 9, 592
BsiSI	CCGG	2 cut(s)	6, 39
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	4 cut(s)	151, 225, 367, 512
BsmAI	GTCTC	2 cut(s)	279, 381
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	3 cut(s)	5, 9, 592
Bso31I	GGTCTC	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	206
Bsp143I	GATC	2 cut(s)	16, 81
BspACI	CCGC	4 cut(s)	263, 268, 623, 628
BspANI	GGCC	3 cut(s)	5, 9, 592
BspCNI	CTCAG	2 cut(s)	262, 289
BspEI	TCCGGA	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	105, 561
BspMAI	CTGCAG	1 cut(s)	460
BspPI	GGATC	1 cut(s)	11
BspQI	GCTCTTC	1 cut(s)	457
BspTI	CTTAAG	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	268
BsrDI	GCAATG	2 cut(s)	489, 582
BsrFI	RCCGGY	1 cut(s)	5
BsrGI	TGTACA	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	2 cut(s)	16, 81
BssNI	GRCGYC	1 cut(s)	619
Bst4CI	ACNGT	2 cut(s)	528, 636
Bst6I	CTCTTC	3 cut(s)	39, 188, 457
BstACI	GRCGYC	1 cut(s)	619
BstAFI	CTTAAG	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstAUI	TGTACA	1 cut(s)	206
BstC8I	GCNNGC	4 cut(s)	7, 177, 448, 623
BstDEI	CTNAG	2 cut(s)	249, 276
BstF5I	GGATG	3 cut(s)	234, 403, 448
BstKTI	GATC	2 cut(s)	19, 84
BstMAI	GTCTC	2 cut(s)	279, 381
BstMBI	GATC	2 cut(s)	16, 81
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	293, 612
BsuRI	GGCC	3 cut(s)	5, 9, 592
BtsCI	GGATG	3 cut(s)	234, 403, 448
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	4 cut(s)	7, 177, 448, 623
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	1 cut(s)	627
Csp6I	GTAC	2 cut(s)	164, 207
CviAII	CATG	1 cut(s)	542
CviJI	RGCY	8 cut(s)	5, 9, 62, 106, 155, 175, 324, 592
CviKI_1	RGCY	8 cut(s)	5, 9, 62, 106, 155, 175, 324, 592
CviQI	GTAC	2 cut(s)	164, 207
DdeI	CTNAG	2 cut(s)	249, 276
DpnI	GATC	2 cut(s)	18, 83
DpnII	GATC	2 cut(s)	16, 81
EaeI	YGGCCR	3 cut(s)	3, 7, 590
Eam1104I	CTCTTC	3 cut(s)	39, 188, 457
EarI	CTCTTC	3 cut(s)	39, 188, 457
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	2 cut(s)	84, 209
EcoT22I	ATGCAT	1 cut(s)	343
FaeI	CATG	1 cut(s)	545
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	541
FauI	CCCGC	2 cut(s)	261, 630
Fnu4HI	GCNGC	2 cut(s)	282, 626
FokI	GGATG	3 cut(s)	241, 410, 455
FseI	GGCCGGCC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	282, 626
GluI	GCNGC	2 cut(s)	282, 626
HaeIII	GGCC	3 cut(s)	5, 9, 592
HapII	CCGG	2 cut(s)	6, 39
HgaI	GACGC	1 cut(s)	627
Hin1I	GRCGYC	1 cut(s)	619
Hin1II	CATG	1 cut(s)	545
HinfI	GANTC	3 cut(s)	247, 272, 431
HpaII	CCGG	2 cut(s)	6, 39
HphI	GGTGA	2 cut(s)	359, 382
Hpy188I	TCNGA	3 cut(s)	16, 189, 252
Hpy188III	TCNNGA	4 cut(s)	39, 356, 551, 569
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	335, 457
HpyCH4III	ACNGT	2 cut(s)	528, 636
HpyCH4V	TGCA	3 cut(s)	341, 458, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	2 cut(s)	249, 276
Hsp92I	GRCGYC	1 cut(s)	619
Hsp92II	CATG	1 cut(s)	545
Kpn2I	TCCGGA	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	16, 81
LguI	GCTCTTC	1 cut(s)	457
LmnI	GCTCC	2 cut(s)	103, 265
Lsp1109I	GCAGC	2 cut(s)	293, 612
LweI	GCATC	3 cut(s)	350, 388, 433
MaeIII	GTNAC	2 cut(s)	347, 522
MalI	GATC	2 cut(s)	18, 83
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	2 cut(s)	16, 81
MboII	GAAGA	5 cut(s)	56, 77, 202, 205, 444
MfeI	CAATTG	1 cut(s)	180
MluCI	AATT	2 cut(s)	180, 210
MlyI	GAGTC	2 cut(s)	241, 281
MnlI	CCTC	7 cut(s)	40, 117, 191, 366, 396, 433, 565
Mph1103I	ATGCAT	1 cut(s)	343
MroI	TCCGGA	1 cut(s)	38
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	2 cut(s)	384, 411
MspA1I	CMGCKG	1 cut(s)	625
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	2 cut(s)	6, 39
MunI	CAATTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	581
NaeI	GCCGGC	1 cut(s)	7
NdeII	GATC	2 cut(s)	16, 81
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	2 cut(s)	105, 561
NmuCI	GTSAC	1 cut(s)	347
NsiI	ATGCAT	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	457
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	431
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	283, 627
PleI	GAGTC	2 cut(s)	241, 280
PpsI	GAGTC	2 cut(s)	241, 280
PshBI	ATTAAT	1 cut(s)	384
PsiI	TTATAA	1 cut(s)	537
PspN4I	GGNNCC	2 cut(s)	105, 561
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	460
RigI	GGCCGGCC	1 cut(s)	9
RsaI	GTAC	2 cut(s)	165, 208
RsaNI	GTAC	2 cut(s)	164, 207
SapI	GCTCTTC	1 cut(s)	457
SaqAI	TTAA	2 cut(s)	384, 411
SatI	GCNGC	2 cut(s)	282, 626
Sau3AI	GATC	2 cut(s)	16, 81
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	2 cut(s)	241, 281
SetI	ASST	6 cut(s)	51, 363, 377, 407, 417, 468
SfaNI	GCATC	3 cut(s)	350, 388, 433
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	2 cut(s)	319, 410
SmoI	CTYRAG	2 cut(s)	319, 410
Sse9I	AATT	2 cut(s)	180, 210
SsiI	CCGC	4 cut(s)	263, 268, 623, 628
TaaI	ACNGT	2 cut(s)	528, 636
TaqI	TCGA	4 cut(s)	214, 237, 417, 438
TasI	AATT	2 cut(s)	180, 210
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	2 cut(s)	384, 411
Tru9I	TTAA	2 cut(s)	384, 411
TscAI	CASTG	1 cut(s)	465
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	2 cut(s)	281, 625
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	84
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	465
Van91I	CCANNNNNTGG	1 cut(s)	512
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	134
VspI	ATTAAT	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.