FvH4_7g23740

The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013092
Physical Location & Seq
Reverse (-)
18454566 .. 18459036
4471 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23740.t1

Sequence Viewer

Length: 621 bp
ATGGCATCCAAAACCCAAGTTGCAGTTGTTGATGTTGAGCAAGGAGGTCGCCGGAGCTACTCGGATTCCGGGTCAGATGAGGAAGAGGAGGAGGAGAAGCAGAGGAGGAGCTCATGTGTGTCTGGGAGTAGTGAAGAGATTGTGGATGTGAGTGAGGAGTCTACAGAAGAGGAGGAGGTGGATCTGGAATGTGGAGGGGTGCCTGCTGAAGTGAAGGTCCACGTGGCAAGAGTGAAGAGGGATTGTAGGATTTGTCATCTGAGTATGGATGCAACTAATCATGAATCTGGGATTCCTATTGAGTTGGGGTGTTCTTGTAAGGAGGATTTGGCTGCTGCACATAAACAGTGTGCTGAGGCCTGGTTCAAGATCAAGGGTAACAAAACCTGCGAGATATGCGGCTCAACTGCACGCAATGTTGCTGGGGTGAATGAAGCTGAGTTGGCAGAGCAGTGGAATGAAGCAAATGATACTGCAATGCCACCAGCACCAGTTACCGCTACACAGCCAGCAGAGAACCGAAACTTCTGGCAGGGTCATCGGTTCCTCAACTTCTTGCTAGCTTGTATGGTCTTCGCCTTTGTCATCTCTTGGCTCTTTCACTTCAATGTACCCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

207

Amino Acids

22.68

Weight (kDa)

4.71

Isoelectric Point (pI)

70.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 82 - 133 1.7e-10 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05830
fragaria_vesca FvH4_7g23740 FvH4_7g23740
malus_domestica MD01G1144600.v1.1 MD07G1211200.v1.1
prunus_persica Prupe.2G244000_v2.0.a1
pyrus_communis pycom01g16420 pycom07g19470
rosa_chinensis RchiOBHm_Chr1g0369041
rosa_laevigata RLG00000027162
rosa_multiflora Rmu_sc0004250.1_g000028
rosa_roxburghii Rroxscaffold_4G00288060
rosa_rugosa Rorug01G0347000
rosa_samantha Rh1AG354200 Rh1BG317600 Rh1CG332100 Rh1DG348500
rosa_wichuraiana Rw1G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 199
AccI GTMKAC 1 cut(s) 161
AciI CCGC 2 cut(s) 399, 498
AclWI GGATC 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 228
AcvI CACGTG 1 cut(s) 223
AfaI GTAC 1 cut(s) 612
AgsI TTSAA 2 cut(s) 367, 607
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 4 cut(s) 57, 111, 437, 563
AluI AGCT 4 cut(s) 57, 111, 437, 563
Alw21I GWGCWC 1 cut(s) 113
AlwI GGATC 1 cut(s) 189
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 2 cut(s) 332, 335
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 439
AsuNHI GCTAGC 1 cut(s) 559
AvaII GGWCC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 113
BbrPI CACGTG 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 565
Bbv12I GWGCWC 1 cut(s) 113
BbvCI CCTCAGC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 319, 322
BcgI CGANNNNNNTGC 4 cut(s) 29, 63, 521, 555
BciT130I CCWGG 1 cut(s) 361
BcnI CCSGG 1 cut(s) 70
BfaI CTAG 1 cut(s) 560
BfmI CTRYAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 395
BisI GCNGC 3 cut(s) 333, 336, 400
BlsI GCNGC 3 cut(s) 334, 337, 401
Bme1390I CCNGG 2 cut(s) 70, 361
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 2 cut(s) 201, 545
BmrFI CCNGG 2 cut(s) 70, 361
BmsI GCATC 2 cut(s) 14, 259
BmtI GCTAGC 1 cut(s) 563
BpiI GAAGAC 1 cut(s) 565
Bpu10I CCTNAGC 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 70
BsaAI YACGTR 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bse1I ACTGG 1 cut(s) 491
Bse3DI GCAATG 2 cut(s) 421, 483
BseBI CCWGG 1 cut(s) 361
BseGI GGATG 3 cut(s) 5, 151, 274
BseMI GCAATG 2 cut(s) 421, 483
BseMII CTCAG 3 cut(s) 251, 345, 429
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 8 cut(s) 101, 104, 107, 118, 121, 170, 185, 188
BseXI GCAGC 2 cut(s) 319, 322
BseYI CCCAGC 1 cut(s) 422
BsgI GTGCAG 2 cut(s) 321, 393
BshFI GGCC 1 cut(s) 359
BshNI GGYRCC 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 113
BsiSI CCGG 2 cut(s) 52, 69
BsnI GGCC 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 2 cut(s) 181, 369
BspACI CCGC 2 cut(s) 399, 498
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 3 cut(s) 252, 346, 430
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 2 cut(s) 201, 545
BspMI ACCTGC 1 cut(s) 395
BspOI GCTAGC 1 cut(s) 563
BspPI GGATC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 199
BsrDI GCAATG 2 cut(s) 421, 483
BsrI ACTGG 1 cut(s) 491
BssMI GATC 2 cut(s) 181, 369
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 348
Bst6I CTCTTC 4 cut(s) 78, 129, 162, 230
BstBAI YACGTR 1 cut(s) 223
BstC8I GCNNGC 4 cut(s) 204, 412, 510, 561
BstDEI CTNAG 3 cut(s) 260, 354, 438
BstF5I GGATG 3 cut(s) 5, 151, 274
BstKTI GATC 2 cut(s) 184, 372
BstMBI GATC 2 cut(s) 181, 369
BstMWI GCNNNNNNNGC 2 cut(s) 396, 443
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 2 cut(s) 68, 359
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 319, 322
BstV2I GAAGAC 1 cut(s) 565
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 359
BtsCI GGATG 3 cut(s) 5, 151, 274
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 2 cut(s) 353, 458
BveI ACCTGC 1 cut(s) 395
Cac8I GCNNGC 4 cut(s) 204, 412, 510, 561
CciI TCATGA 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 611
CviAII CATG 2 cut(s) 114, 281
CviJI RGCY 9 cut(s) 57, 111, 332, 359, 402, 437, 508, 563, 595
CviKI_1 RGCY 9 cut(s) 57, 111, 332, 359, 402, 437, 508, 563, 595
CviQI GTAC 1 cut(s) 611
DdeI CTNAG 3 cut(s) 260, 354, 438
DpnI GATC 2 cut(s) 183, 371
DpnII GATC 2 cut(s) 181, 369
Eam1104I CTCTTC 4 cut(s) 78, 129, 162, 230
EarI CTCTTC 4 cut(s) 78, 129, 162, 230
Ecl136II GAGCTC 1 cut(s) 111
Eco147I AGGCCT 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 228
Eco72I CACGTG 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 113
FaeI CATG 2 cut(s) 117, 284
FaiI YATR 7 cut(s) 115, 266, 282, 342, 397, 569, 619
FatI CATG 2 cut(s) 113, 280
FblI GTMKAC 1 cut(s) 161
Fnu4HI GCNGC 3 cut(s) 333, 336, 400
FokI GGATG 2 cut(s) 158, 281
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 3 cut(s) 333, 336, 400
FspBI CTAG 1 cut(s) 560
GluI GCNGC 3 cut(s) 333, 336, 400
GsaI CCCAGC 1 cut(s) 426
HaeIII GGCC 1 cut(s) 359
HapII CCGG 2 cut(s) 52, 69
Hin1II CATG 2 cut(s) 117, 284
HinfI GANTC 4 cut(s) 65, 158, 284, 292
HpaII CCGG 2 cut(s) 52, 69
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 2 cut(s) 162, 220
Hpy188I TCNGA 3 cut(s) 64, 76, 261
Hpy188III TCNNGA 3 cut(s) 185, 281, 367
Hpy8I GTNNAC 2 cut(s) 162, 220
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 5 cut(s) 23, 272, 338, 410, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 396, 443
HpyF3I CTNAG 3 cut(s) 260, 354, 438
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 117, 284
Kzo9I GATC 2 cut(s) 181, 369
LmnI GCTCC 2 cut(s) 54, 108
Lsp1109I GCAGC 2 cut(s) 319, 322
LweI GCATC 2 cut(s) 14, 259
MaeI CTAG 1 cut(s) 560
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 377, 493
MalI GATC 2 cut(s) 183, 371
MboI GATC 2 cut(s) 181, 369
MboII GAAGA 5 cut(s) 95, 146, 179, 247, 565
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 113
MlyI GAGTC 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 606
MspI CCGG 2 cut(s) 52, 69
MspR9I CCNGG 2 cut(s) 70, 361
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 2 cut(s) 396, 443
NciI CCSGG 1 cut(s) 70
NdeII GATC 2 cut(s) 181, 369
NheI GCTAGC 1 cut(s) 559
NlaIII CATG 2 cut(s) 117, 284
NlaIV GGNNCC 2 cut(s) 201, 545
PagI TCATGA 1 cut(s) 280
PceI AGGCCT 1 cut(s) 359
PfeI GAWTC 3 cut(s) 65, 284, 292
PkrI GCNGC 3 cut(s) 334, 337, 401
PleI GAGTC 1 cut(s) 166
PmaCI CACGTG 1 cut(s) 223
PmlI CACGTG 1 cut(s) 223
PpsI GAGTC 1 cut(s) 166
Ppu21I YACGTR 1 cut(s) 223
Psp124BI GAGCTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 359
PspCI CACGTG 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 422
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 201, 545
PspPI GGNCC 1 cut(s) 217
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
RseI CAYNNNNRTG 1 cut(s) 606
SacI GAGCTC 1 cut(s) 113
SatI GCNGC 3 cut(s) 333, 336, 400
Sau3AI GATC 2 cut(s) 181, 369
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 70, 361
SduI GDGCHC 1 cut(s) 113
SetI ASST 9 cut(s) 49, 59, 113, 180, 219, 225, 389, 439, 565
SfaNI GCATC 2 cut(s) 14, 259
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 606
SseBI AGGCCT 1 cut(s) 359
SsiI CCGC 2 cut(s) 399, 498
SspMI CTAG 1 cut(s) 560
SstI GAGCTC 1 cut(s) 113
StuI AGGCCT 1 cut(s) 359
StyD4I CCNGG 2 cut(s) 68, 359
TaaI ACNGT 1 cut(s) 348
TaiI ACGT 1 cut(s) 225
TauI GCSGC 1 cut(s) 402
TfiI GAWTC 3 cut(s) 65, 284, 292
TscAI CASTG 2 cut(s) 353, 458
TseI GCWGC 2 cut(s) 332, 335
TspDTI ATGAA 3 cut(s) 297, 447, 474
TspRI CASTG 2 cut(s) 353, 458
VpaK11BI GGWCC 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 161
XspI CTAG 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.