pycom07g19470

The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013092
Physical Location & Seq
Reverse (-)
21816304 .. 21818910
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g19470.2

Sequence Viewer

Length: 438 bp
ATGGCAGCCGCAGACAAATCCCACGTGGTTGTTGATGTGGAGGAGGAGGAAGTGGGACGCCGCAGCGCCGCCACGGGTCGAAGTAGTTACTTTGACTCCGGCTCCCAGGGGTCGGAGGACCAGGAGGGGAGATGCTCCAGTGAGTCAGGGTCTGAGATTGTGGAGAGGGAATCCTCTGTGTCGGAGGGTTCGGTTGAGGTGGATCTGGAGGAGTTGAAGATGCACGTGGTGAAGGTGGAGAGGGATTGCAGGATTTGTCATCTGAGCTTGGATGCAACGAATCAGGAATCTGGGATTCCTATTGAGCTGGGGTGTTCTTGTAAGGCTGATTTGGCTGCTGCCCACAAGCAGTGTGCTGAGGCTGCAACTGGTTCAAGATCAAGGGTAACAAAACCTGTGAGATCTGTGGATCAACCGCACGTAATGTTTCTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

146

Amino Acids

15.57

Weight (kDa)

4.85

Isoelectric Point (pI)

67.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013092)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05830
fragaria_vesca FvH4_7g23740 FvH4_7g23740
malus_domestica MD01G1144600.v1.1 MD07G1211200.v1.1
prunus_persica Prupe.2G244000_v2.0.a1
pyrus_communis pycom01g16420 pycom07g19470
rosa_chinensis RchiOBHm_Chr1g0369041
rosa_laevigata RLG00000027162
rosa_multiflora Rmu_sc0004250.1_g000028
rosa_roxburghii Rroxscaffold_4G00288060
rosa_rugosa Rorug01G0347000
rosa_samantha Rh1AG354200 Rh1BG317600 Rh1CG332100 Rh1DG348500
rosa_wichuraiana Rw1G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 9, 61, 69, 416
AclWI GGATC 2 cut(s) 210, 417
AcvI CACGTG 2 cut(s) 25, 226
AcyI GRCGYC 1 cut(s) 58
AdeI CACNNNGTG 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 2 cut(s) 217, 375
AjnI CCWGG 2 cut(s) 105, 120
AluBI AGCT 2 cut(s) 267, 307
AluI AGCT 2 cut(s) 267, 307
AlwI GGATC 2 cut(s) 210, 417
AlwNI CAGNNNCTG 1 cut(s) 152
ApeKI GCWGC 5 cut(s) 5, 63, 335, 338, 362
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 118
BbrPI CACGTG 2 cut(s) 25, 226
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 5 cut(s) 17, 75, 322, 325, 349
BciT130I CCWGG 2 cut(s) 107, 122
BfoI RGCGCY 1 cut(s) 69
BglII AGATCT 1 cut(s) 401
BisI GCNGC 8 cut(s) 6, 9, 61, 64, 69, 336, 339, 363
BlsI GCNGC 8 cut(s) 7, 10, 62, 65, 70, 337, 340, 364
Bme1390I CCNGG 2 cut(s) 107, 122
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 2 cut(s) 107, 122
BmsI GCATC 3 cut(s) 122, 210, 262
BpmI CTGGAG 2 cut(s) 121, 227
Bpu10I CCTNAGC 1 cut(s) 357
BsaAI YACGTR 3 cut(s) 25, 226, 421
BsaHI GRCGYC 1 cut(s) 58
BsaJI CCNNGG 3 cut(s) 72, 105, 106
BsaXI ACNNNNNCTCC 4 cut(s) 80, 86, 110, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 2 cut(s) 138, 373
BseBI CCWGG 2 cut(s) 107, 122
BseDI CCNNGG 3 cut(s) 72, 105, 106
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 3 cut(s) 144, 254, 348
BseNI ACTGG 2 cut(s) 138, 373
BseRI GAGGAG 3 cut(s) 56, 59, 224
BseXI GCAGC 5 cut(s) 17, 75, 322, 325, 349
BseYI CCCAGC 1 cut(s) 307
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 69
Bsp143I GATC 4 cut(s) 202, 377, 401, 409
BspACI CCGC 4 cut(s) 9, 61, 69, 416
BspCNI CTCAG 3 cut(s) 145, 255, 349
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 2 cut(s) 210, 417
BsrI ACTGG 2 cut(s) 138, 373
BssECI CCNNGG 3 cut(s) 72, 105, 106
BssMI GATC 4 cut(s) 202, 377, 401, 409
BssNI GRCGYC 1 cut(s) 58
Bst2UI CCWGG 2 cut(s) 107, 122
BstACI GRCGYC 1 cut(s) 58
BstBAI YACGTR 3 cut(s) 25, 226, 421
BstDEI CTNAG 3 cut(s) 153, 263, 357
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 4 cut(s) 205, 380, 404, 412
BstMBI GATC 4 cut(s) 202, 377, 401, 409
BstMWI GCNNNNNNNGC 2 cut(s) 332, 362
BstNI CCWGG 2 cut(s) 107, 122
BstSCI CCNGG 2 cut(s) 105, 120
BstV1I GCAGC 5 cut(s) 17, 75, 322, 325, 349
BstX2I RGATCY 2 cut(s) 202, 401
BstYI RGATCY 2 cut(s) 202, 401
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 2 cut(s) 145, 356
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 1 cut(s) 66
CviJI RGCY 7 cut(s) 8, 102, 267, 307, 326, 335, 362
CviKI_1 RGCY 7 cut(s) 8, 102, 267, 307, 326, 335, 362
DdeI CTNAG 3 cut(s) 153, 263, 357
DpnI GATC 4 cut(s) 204, 379, 403, 411
DpnII GATC 4 cut(s) 202, 377, 401, 409
DraIII CACNNNGTG 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 118
Eco72I CACGTG 2 cut(s) 25, 226
EcoRII CCWGG 2 cut(s) 105, 120
FaqI GGGAC 1 cut(s) 69
Fnu4HI GCNGC 8 cut(s) 6, 9, 61, 64, 69, 336, 339, 363
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 8 cut(s) 6, 9, 61, 64, 69, 336, 339, 363
GlaI GCGC 1 cut(s) 67
GluI GCNGC 8 cut(s) 6, 9, 61, 64, 69, 336, 339, 363
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 2 cut(s) 121, 227
HaeII RGCGCY 1 cut(s) 69
HapII CCGG 1 cut(s) 99
HgaI GACGC 1 cut(s) 66
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 58
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 6 cut(s) 95, 143, 170, 280, 287, 295
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 241
Hpy188I TCNGA 4 cut(s) 115, 154, 184, 264
Hpy188III TCNNGA 3 cut(s) 206, 284, 375
HpyAV CCTTC 1 cut(s) 226
HpyCH4IV ACGT 3 cut(s) 24, 225, 420
HpyCH4V TGCA 4 cut(s) 223, 249, 275, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 362
HpyF3I CTNAG 3 cut(s) 153, 263, 357
HpySE526I ACGT 3 cut(s) 24, 225, 420
Hsp92I GRCGYC 1 cut(s) 58
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 4 cut(s) 202, 377, 401, 409
LmnI GCTCC 2 cut(s) 107, 140
Lsp1109I GCAGC 5 cut(s) 17, 75, 322, 325, 349
LweI GCATC 3 cut(s) 122, 210, 262
MaeII ACGT 3 cut(s) 24, 225, 420
MaeIII GTNAC 2 cut(s) 86, 385
MalI GATC 4 cut(s) 204, 379, 403, 411
MboI GATC 4 cut(s) 202, 377, 401, 409
MboII GAAGA 1 cut(s) 229
MflI RGATCY 2 cut(s) 202, 401
MlyI GAGTC 2 cut(s) 89, 152
MmeI TCCRAC 2 cut(s) 93, 162
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 107, 122
MvaI CCWGG 2 cut(s) 107, 122
MwoI GCNNNNNNNGC 2 cut(s) 332, 362
NdeII GATC 4 cut(s) 202, 377, 401, 409
NlaIV GGNNCC 1 cut(s) 103
PasI CCCWGGG 1 cut(s) 106
PfeI GAWTC 4 cut(s) 170, 280, 287, 295
PkrI GCNGC 8 cut(s) 7, 10, 62, 65, 70, 337, 340, 364
PleI GAGTC 2 cut(s) 89, 151
PmaCI CACGTG 2 cut(s) 25, 226
PmlI CACGTG 2 cut(s) 25, 226
PpsI GAGTC 2 cut(s) 89, 151
Ppu21I YACGTR 3 cut(s) 25, 226, 421
Psp6I CCWGG 2 cut(s) 105, 120
PspCI CACGTG 2 cut(s) 25, 226
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 2 cut(s) 105, 120
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 152
PsuI RGATCY 2 cut(s) 202, 401
SatI GCNGC 8 cut(s) 6, 9, 61, 64, 69, 336, 339, 363
Sau3AI GATC 4 cut(s) 202, 377, 401, 409
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 2 cut(s) 89, 152
ScrFI CCNGG 2 cut(s) 107, 122
SetI ASST 8 cut(s) 27, 201, 228, 237, 269, 309, 397, 423
SfaNI GCATC 3 cut(s) 122, 210, 262
SinI GGWCC 1 cut(s) 118
SsiI CCGC 4 cut(s) 9, 61, 69, 416
StyD4I CCNGG 2 cut(s) 105, 120
TaiI ACGT 3 cut(s) 27, 228, 423
TaqI TCGA 1 cut(s) 79
TauI GCSGC 3 cut(s) 11, 63, 71
TfiI GAWTC 4 cut(s) 170, 280, 287, 295
TscAI CASTG 2 cut(s) 145, 356
TseI GCWGC 5 cut(s) 5, 63, 335, 338, 362
TspRI CASTG 2 cut(s) 145, 356
VpaK11BI GGWCC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.