FvH4_7g26120

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013252
Physical Location & Seq
Forward (+)
19829059 .. 19830952
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26120.t1

Sequence Viewer

Length: 534 bp
ATGAAAGGAGGAAGGAAGAATCTGAAGAGGGCTGTGGAGGAGCAGAGCTTGACCCTCAGCGATGGCCATTCTATAATGCAAGTGGTTTCTCTACGTGGTTCCAATCTCATTGAGGTAATGGATGCAAAAGGAGAGAAATATTTGGCGTTGTTTCCGGCTAAGTTTTCAAAGAGCATGTGGATAAAACAAGGGAGCTTTGTTGTGGTTGATGCAAGTGAGAAGGACAAGGTTATTGAATCAGGCGGTAAGGTGGCATGTATTGTTTCCCAAGTTCTGTTTTTCGAACAAGTTCGTGCACTTAGGAAATCACCAGAATGGCCTGAAATCTTCAAATCCACGGTTTCAGAAGAACCATGTGGAAGTCTGAAGGGACCTACCACCAAGCAAGAAGGGAATGAGAATGACAATGAGGATGACTCTAGTGATGATGATGGACTTCCTCCATTAGAAGCCAACATGAACAGGATGAGACCATCTGAATGGCAATCAGAGGAAGAATCGAATTCAGGAACAGATTCAGGAACTGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
eIF-1a

Protein Analysis

178

Amino Acids

19.49

Weight (kDa)

4.77

Isoelectric Point (pI)

53.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-1a PF01176 23 - 75 1.3e-12 Translation initiation factor 1A / IF-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40780 AT2G40780
fragaria_vesca FvH4_4g04970 FvH4_7g26120
malus_domestica MD01G1169400.v1.1
prunus_persica Prupe.2G265600_v2.0.a1
pyrus_communis pycom01g18210 pycom07g21280
rosa_chinensis RchiOBHm_Chr1g0372561
rosa_laevigata RLG00000026891
rosa_multiflora Rmu_co8142570.1_g000001 Rmu_sc0011709.1_g000001
rosa_roxburghii Rroxscaffold_4G00284850
rosa_rugosa Rorug01G0372800
rosa_samantha Rh1AG381300 Rh1BG344700 Rh1CG358100
rosa_wichuraiana Rw1G033530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 2 cut(s) 44, 386
AgsI TTSAA 3 cut(s) 168, 236, 331
AluBI AGCT 2 cut(s) 48, 195
AluI AGCT 2 cut(s) 48, 195
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 463
Alw44I GTGCAC 1 cut(s) 294
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 2 cut(s) 64, 317
ApaLI GTGCAC 1 cut(s) 294
ApoI RAATTY 1 cut(s) 502
Asp700I GAANNNNTTC 3 cut(s) 288, 514, 526
AspS9I GGNCC 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 300
AsuII TTCGAA 1 cut(s) 282
AvaII GGWCC 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 298
BbvCI CCTCAGC 1 cut(s) 56
BccI CCATC 3 cut(s) 56, 425, 481
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 1 cut(s) 420
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 100, 372
BmsI GCATC 2 cut(s) 112, 199
BplI GAGNNNNNCTC 2 cut(s) 401, 433
Bpu10I CCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 3 cut(s) 127, 418, 471
BseMII CTCAG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 298
BshFI GGCC 2 cut(s) 66, 319
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 66, 319
Bso31I GGTCTC 1 cut(s) 463
Bsp119I TTCGAA 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 298
BspACI CCGC 1 cut(s) 243
BspANI GGCC 2 cut(s) 66, 319
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 100, 372
BspT104I TTCGAA 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 1 cut(s) 20
BstBAI YACGTR 1 cut(s) 95
BstBI TTCGAA 1 cut(s) 282
BstDEI CTNAG 3 cut(s) 56, 159, 299
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 127, 418, 471
BstMAI GTCTC 1 cut(s) 463
BstNSI RCATGY 2 cut(s) 178, 258
BstSLI GKGCMC 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 480
BsuRI GGCC 2 cut(s) 66, 319
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 3 cut(s) 127, 418, 471
CaiI CAGNNNCTG 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 371
CviAII CATG 4 cut(s) 175, 255, 354, 457
CviJI RGCY 7 cut(s) 32, 48, 66, 158, 195, 319, 452
CviKI_1 RGCY 7 cut(s) 32, 48, 66, 158, 195, 319, 452
DdeI CTNAG 3 cut(s) 56, 159, 299
EaeI YGGCCR 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 371
Eco57I CTGAAG 2 cut(s) 44, 386
EcoO109I RGGNCCY 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 502
FaeI CATG 4 cut(s) 178, 258, 357, 460
FaiI YATR 5 cut(s) 74, 176, 256, 355, 458
FaqI GGGAC 1 cut(s) 384
FatI CATG 4 cut(s) 174, 254, 353, 456
FokI GGATG 3 cut(s) 134, 425, 478
FspBI CTAG 1 cut(s) 420
HaeIII GGCC 2 cut(s) 66, 319
HapII CCGG 1 cut(s) 155
Hin1II CATG 4 cut(s) 178, 258, 357, 460
HinfI GANTC 6 cut(s) 19, 236, 416, 497, 515, 527
HpaII CCGG 1 cut(s) 155
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 5 cut(s) 24, 346, 366, 478, 490
Hpy188III TCNNGA 3 cut(s) 507, 519, 531
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 4 cut(s) 6, 214, 361, 383
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 4 cut(s) 79, 125, 212, 296
HpyF3I CTNAG 3 cut(s) 56, 159, 299
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 4 cut(s) 178, 258, 357, 460
LmnI GCTCC 2 cut(s) 40, 192
LpnPI CCDG 7 cut(s) 168, 225, 324, 333, 448, 492, 504
LweI GCATC 2 cut(s) 112, 199
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 94
MboII GAAGA 5 cut(s) 28, 37, 319, 359, 506
MhlI GDGCHC 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 66
MluCI AATT 1 cut(s) 502
MluNI TGGCCA 1 cut(s) 66
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 7 cut(s) 21, 31, 65, 106, 403, 450, 484
Mox20I TGGCCA 1 cut(s) 66
MroXI GAANNNNTTC 3 cut(s) 288, 514, 526
MscI TGGCCA 1 cut(s) 66
MslI CAYNNNNRTG 2 cut(s) 313, 478
Msp20I TGGCCA 1 cut(s) 66
MspI CCGG 1 cut(s) 155
NlaIII CATG 4 cut(s) 178, 258, 357, 460
NlaIV GGNNCC 2 cut(s) 100, 372
NspI RCATGY 2 cut(s) 178, 258
NspV TTCGAA 1 cut(s) 282
PdmI GAANNNNTTC 3 cut(s) 288, 514, 526
PfeI GAWTC 5 cut(s) 19, 236, 497, 515, 527
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 371
Psp5II RGGWCCY 1 cut(s) 371
PspN4I GGNNCC 2 cut(s) 100, 372
PspPI GGNCC 1 cut(s) 371
PspPPI RGGWCCY 1 cut(s) 371
PstNI CAGNNNCTG 1 cut(s) 524
RseI CAYNNNNRTG 2 cut(s) 313, 478
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 410
SduI GDGCHC 1 cut(s) 298
SetI ASST 7 cut(s) 50, 97, 117, 197, 231, 252, 376
SfaNI GCATC 2 cut(s) 112, 199
SfuI TTCGAA 1 cut(s) 282
SinI GGWCC 1 cut(s) 371
SmiMI CAYNNNNRTG 2 cut(s) 313, 478
Sse9I AATT 1 cut(s) 502
SsiI CCGC 1 cut(s) 243
SspI AATATT 1 cut(s) 140
SspMI CTAG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 282, 500
TasI AATT 1 cut(s) 502
TfiI GAWTC 5 cut(s) 19, 236, 497, 515, 527
TspDTI ATGAA 2 cut(s) 17, 473
VneI GTGCAC 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 1 cut(s) 502
XceI RCATGY 2 cut(s) 178, 258
XmnI GAANNNNTTC 3 cut(s) 288, 514, 526
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.