Rh1BG344700

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013252
Physical Location & Seq
Forward (+)
47781055 .. 47782138
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG344700.1

Sequence Viewer

Length: 402 bp
ATGAAAGGAGGAAGGAAGAATCTGAAGAGGGCTGTGGAGGAACAGAGCTTAACCCTCAGCGATGGCCACTCTATAATGCAAGTGCTTTCTCTACGTGGTTCCAATCTCATTGAGGTAATGGATGCACAAGGAGAGAAATCTTTGGCATTGTTTCCGGCTAAGTTTTCGAAGAGCATGTGGATAAAAAGAGGGAGTTTTGTTGTGGTTGATGCAAGTGAAAAGGACAAGGTTCTTGAATCAGGCGGCAAAGTGGCATGTATTGTTTCCCAAGTTCTGTTTTTCGAACAAGTTCGTGCACTTCGGAAATCACCAGATTGGCCAGAAATCTTCAAATCCACTGTTTCGGATGAGCCATGTGGAAGTTTGAAGGGACACACCTCTAAACAAGAAGAGAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
eIF-1a

Protein Analysis

133

Amino Acids

14.71

Weight (kDa)

8.56

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-1a PF01176 23 - 75 2.6e-12 Translation initiation factor 1A / IF-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40780 AT2G40780
fragaria_vesca FvH4_4g04970 FvH4_7g26120
malus_domestica MD01G1169400.v1.1
prunus_persica Prupe.2G265600_v2.0.a1
pyrus_communis pycom01g18210 pycom07g21280
rosa_chinensis RchiOBHm_Chr1g0372561
rosa_laevigata RLG00000026891
rosa_multiflora Rmu_co8142570.1_g000001 Rmu_sc0011709.1_g000001
rosa_roxburghii Rroxscaffold_4G00284850
rosa_rugosa Rorug01G0372800
rosa_samantha Rh1AG381300 Rh1BG344700 Rh1CG358100
rosa_wichuraiana Rw1G033530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 243
AcoI YGGCCR 2 cut(s) 64, 317
AcuI CTGAAG 1 cut(s) 44
AgsI TTSAA 3 cut(s) 236, 331, 367
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw21I GWGCWC 1 cut(s) 298
Alw44I GTGCAC 1 cut(s) 294
AoxI GGCC 2 cut(s) 64, 317
ApaLI GTGCAC 1 cut(s) 294
Asp700I GAANNNNTTC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 300
AsuII TTCGAA 2 cut(s) 167, 282
BaeGI GKGCMC 1 cut(s) 298
BalI TGGCCA 2 cut(s) 66, 319
Bbv12I GWGCWC 1 cut(s) 298
BbvCI CCTCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 56
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 2 cut(s) 112, 199
Bpu10I CCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 2 cut(s) 167, 282
BsaAI YACGTR 1 cut(s) 95
BseGI GGATG 2 cut(s) 127, 352
BseMII CTCAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 298
BshFI GGCC 2 cut(s) 66, 319
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 66, 319
Bsp119I TTCGAA 2 cut(s) 167, 282
Bsp1286I GDGCHC 1 cut(s) 298
BspACI CCGC 1 cut(s) 243
BspANI GGCC 2 cut(s) 66, 319
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 100
BspQI GCTCTTC 1 cut(s) 164
BspT104I TTCGAA 2 cut(s) 167, 282
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 3 cut(s) 20, 164, 384
BstBAI YACGTR 1 cut(s) 95
BstBI TTCGAA 2 cut(s) 167, 282
BstDEI CTNAG 2 cut(s) 56, 159
BstF5I GGATG 2 cut(s) 127, 352
BstNSI RCATGY 2 cut(s) 178, 258
BstSLI GKGCMC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 66, 319
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 2 cut(s) 127, 352
BtsIMutI CAGTG 1 cut(s) 336
CviAII CATG 3 cut(s) 175, 255, 354
CviJI RGCY 6 cut(s) 32, 48, 66, 158, 319, 352
CviKI_1 RGCY 6 cut(s) 32, 48, 66, 158, 319, 352
DdeI CTNAG 2 cut(s) 56, 159
EaeI YGGCCR 2 cut(s) 64, 317
Eam1104I CTCTTC 3 cut(s) 20, 164, 384
EarI CTCTTC 3 cut(s) 20, 164, 384
Eco57I CTGAAG 1 cut(s) 44
FaeI CATG 3 cut(s) 178, 258, 357
FaiI YATR 4 cut(s) 74, 176, 256, 355
FaqI GGGAC 1 cut(s) 384
FatI CATG 3 cut(s) 174, 254, 353
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 2 cut(s) 134, 359
Fsp4HI GCNGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 244
HaeIII GGCC 2 cut(s) 66, 319
HapII CCGG 1 cut(s) 155
Hin1II CATG 3 cut(s) 178, 258, 357
HinfI GANTC 2 cut(s) 19, 236
HpaII CCGG 1 cut(s) 155
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 3 cut(s) 24, 303, 346
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 2 cut(s) 6, 361
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 4 cut(s) 79, 125, 212, 296
HpyF3I CTNAG 2 cut(s) 56, 159
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 3 cut(s) 178, 258, 357
LguI GCTCTTC 1 cut(s) 164
LpnPI CCDG 4 cut(s) 168, 225, 324, 333
LweI GCATC 2 cut(s) 112, 199
MaeII ACGT 1 cut(s) 94
MboII GAAGA 5 cut(s) 28, 37, 181, 319, 401
MhlI GDGCHC 1 cut(s) 298
MlsI TGGCCA 2 cut(s) 66, 319
MluNI TGGCCA 2 cut(s) 66, 319
MnlI CCTC 6 cut(s) 21, 31, 65, 106, 182, 388
Mox20I TGGCCA 2 cut(s) 66, 319
MroXI GAANNNNTTC 1 cut(s) 288
MscI TGGCCA 2 cut(s) 66, 319
MseI TTAA 1 cut(s) 50
Msp20I TGGCCA 2 cut(s) 66, 319
MspI CCGG 1 cut(s) 155
NlaIII CATG 3 cut(s) 178, 258, 357
NlaIV GGNNCC 1 cut(s) 100
NspI RCATGY 2 cut(s) 178, 258
NspV TTCGAA 2 cut(s) 167, 282
PciSI GCTCTTC 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 19, 236
PkrI GCNGC 1 cut(s) 245
Ppu21I YACGTR 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 1 cut(s) 244
SduI GDGCHC 1 cut(s) 298
SetI ASST 5 cut(s) 50, 97, 117, 231, 380
SfaNI GCATC 2 cut(s) 112, 199
SfuI TTCGAA 2 cut(s) 167, 282
SsiI CCGC 1 cut(s) 243
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 167, 282
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 2 cut(s) 19, 236
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 343
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 343
VneI GTGCAC 1 cut(s) 294
XceI RCATGY 2 cut(s) 178, 258
XmnI GAANNNNTTC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.