Rh1CG358100

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013252
Physical Location & Seq
Forward (+)
63209204 .. 63210440
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG358100.1

Sequence Viewer

Length: 534 bp
ATGAAAGGAGGAAGGAAGAATCTGAAGAGGGCTGTGGAGGAACAGAGCTTAACCCTCAGCGATGGCCACTCTATAATGCAAGTGCTTTCTCTACGTGGTTCCAATCTCATTGAGGTAATGGATGCTCAAGGAGAGAAATCTTTGGCATTGTTTCCCGCTAAGTTTTCGAAGAGCATGTGGATAAAACGAGGTTTTTTTGTTGTGGTTGATGCAAGTGAAAAGGACAAGGTTCTTGAATCAGGCGGCAAAGTGGCATGTATTGTTTCCCAAGTTCTGTTTTTCGAACAAGTTCGTGCACTTCGGAAATCACCAGATTGGCCAGAAATCTTCAAATCCACTGTTTCGGATGAGCCATGTGGAAGTTTGAAGGGACACACCTCTAAACAAGAAGAGAATGACAATGACAATGAGGATGACTCTAGCGATGATGATGGACTTCCTCCATTAGAAGCCAACATGAACAGGATGAGACCATCTGAATGGCAATCAGAGGCAGAATCGGATTCGGATACAGATTCAGGACCTGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
eIF-1a

Protein Analysis

177

Amino Acids

19.57

Weight (kDa)

4.69

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-1a PF01176 23 - 75 4.9e-11 Translation initiation factor 1A / IF-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40780 AT2G40780
fragaria_vesca FvH4_4g04970 FvH4_7g26120
malus_domestica MD01G1169400.v1.1
prunus_persica Prupe.2G265600_v2.0.a1
pyrus_communis pycom01g18210 pycom07g21280
rosa_chinensis RchiOBHm_Chr1g0372561
rosa_laevigata RLG00000026891
rosa_multiflora Rmu_co8142570.1_g000001 Rmu_sc0011709.1_g000001
rosa_roxburghii Rroxscaffold_4G00284850
rosa_rugosa Rorug01G0372800
rosa_samantha Rh1AG381300 Rh1BG344700 Rh1CG358100
rosa_wichuraiana Rw1G033530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 156, 243
AcoI YGGCCR 2 cut(s) 64, 317
AcuI CTGAAG 1 cut(s) 44
AgsI TTSAA 3 cut(s) 236, 331, 367
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 463
Alw44I GTGCAC 1 cut(s) 294
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 2 cut(s) 64, 317
ApaLI GTGCAC 1 cut(s) 294
Asp700I GAANNNNTTC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 300
AsuII TTCGAA 2 cut(s) 167, 282
AvaII GGWCC 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 298
BalI TGGCCA 2 cut(s) 66, 319
Bbv12I GWGCWC 1 cut(s) 298
BbvCI CCTCAGC 1 cut(s) 56
BccI CCATC 3 cut(s) 56, 425, 481
BciVI GTATCC 1 cut(s) 502
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 1 cut(s) 420
BfuI GTATCC 1 cut(s) 502
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 521
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 2 cut(s) 112, 199
BplI GAGNNNNNCTC 2 cut(s) 401, 433
Bpu10I CCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 2 cut(s) 167, 282
BpuEI CTTGAG 1 cut(s) 111
BsaAI YACGTR 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 463
BseGI GGATG 4 cut(s) 127, 352, 418, 471
BseMII CTCAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 298
BshFI GGCC 2 cut(s) 66, 319
BsiHKAI GWGCWC 1 cut(s) 298
BslFI GGGAC 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 66, 319
Bso31I GGTCTC 1 cut(s) 463
Bsp119I TTCGAA 2 cut(s) 167, 282
Bsp1286I GDGCHC 1 cut(s) 298
BspACI CCGC 2 cut(s) 156, 243
BspANI GGCC 2 cut(s) 66, 319
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 100
BspQI GCTCTTC 1 cut(s) 164
BspT104I TTCGAA 2 cut(s) 167, 282
BspTNI GGTCTC 1 cut(s) 463
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 3 cut(s) 20, 164, 384
BstBAI YACGTR 1 cut(s) 95
BstBI TTCGAA 2 cut(s) 167, 282
BstDEI CTNAG 2 cut(s) 56, 159
BstF5I GGATG 4 cut(s) 127, 352, 418, 471
BstMAI GTCTC 1 cut(s) 463
BstNSI RCATGY 2 cut(s) 178, 258
BstSLI GKGCMC 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 480
BsuI GTATCC 1 cut(s) 502
BsuRI GGCC 2 cut(s) 66, 319
BtgZI GCGATG 2 cut(s) 75, 438
BtsCI GGATG 4 cut(s) 127, 352, 418, 471
BtsIMutI CAGTG 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 521
CviAII CATG 4 cut(s) 175, 255, 354, 457
CviJI RGCY 6 cut(s) 32, 48, 66, 319, 352, 452
CviKI_1 RGCY 6 cut(s) 32, 48, 66, 319, 352, 452
DdeI CTNAG 2 cut(s) 56, 159
EaeI YGGCCR 2 cut(s) 64, 317
Eam1104I CTCTTC 3 cut(s) 20, 164, 384
EarI CTCTTC 3 cut(s) 20, 164, 384
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 521
FaeI CATG 4 cut(s) 178, 258, 357, 460
FaiI YATR 5 cut(s) 74, 176, 256, 355, 458
FaqI GGGAC 1 cut(s) 384
FatI CATG 4 cut(s) 174, 254, 353, 456
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 4 cut(s) 134, 359, 425, 478
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 1 cut(s) 420
GluI GCNGC 1 cut(s) 244
HaeIII GGCC 2 cut(s) 66, 319
Hin1II CATG 4 cut(s) 178, 258, 357, 460
HinfI GANTC 7 cut(s) 19, 236, 416, 497, 503, 515, 527
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 7 cut(s) 24, 303, 346, 478, 490, 502, 508
Hpy188III TCNNGA 3 cut(s) 233, 519, 531
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 2 cut(s) 6, 361
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 3 cut(s) 79, 212, 296
HpyF3I CTNAG 2 cut(s) 56, 159
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 4 cut(s) 178, 258, 357, 460
LguI GCTCTTC 1 cut(s) 164
LpnPI CCDG 5 cut(s) 225, 324, 333, 448, 504
LweI GCATC 2 cut(s) 112, 199
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 94
MboII GAAGA 5 cut(s) 28, 37, 181, 319, 401
MhlI GDGCHC 1 cut(s) 298
MlsI TGGCCA 2 cut(s) 66, 319
MluNI TGGCCA 2 cut(s) 66, 319
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 9 cut(s) 21, 31, 65, 106, 182, 388, 403, 450, 484
Mox20I TGGCCA 2 cut(s) 66, 319
MroXI GAANNNNTTC 1 cut(s) 288
MscI TGGCCA 2 cut(s) 66, 319
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 478
Msp20I TGGCCA 2 cut(s) 66, 319
NlaIII CATG 4 cut(s) 178, 258, 357, 460
NlaIV GGNNCC 1 cut(s) 100
NspI RCATGY 2 cut(s) 178, 258
NspV TTCGAA 2 cut(s) 167, 282
PciSI GCTCTTC 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 6 cut(s) 19, 236, 497, 503, 515, 527
PkrI GCNGC 1 cut(s) 245
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 521
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 521
PspPPI RGGWCCY 1 cut(s) 521
PstNI CAGNNNCTG 1 cut(s) 524
RseI CAYNNNNRTG 1 cut(s) 478
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 1 cut(s) 410
SduI GDGCHC 1 cut(s) 298
SetI ASST 7 cut(s) 50, 97, 117, 193, 231, 380, 526
SfaNI GCATC 2 cut(s) 112, 199
SfuI TTCGAA 2 cut(s) 167, 282
SinI GGWCC 1 cut(s) 521
SmiMI CAYNNNNRTG 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
SsiI CCGC 2 cut(s) 156, 243
SspMI CTAG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 167, 282
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 6 cut(s) 19, 236, 497, 503, 515, 527
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 17, 473
TspRI CASTG 1 cut(s) 343
VneI GTGCAC 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 521
XceI RCATGY 2 cut(s) 178, 258
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.