Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013252

Physical Location & Seq

Genomic Coordinates Forward (+)

23062553 .. 23065051

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCACACTGTACCCATAATCCTGTGGTTTATAATTTCAGTCCCCGAATGAAAGGAGGAAGGAAGAATCTGAAGAGGGCGGTGGAGCAACAGAGCTTAACGTTAGAAGATGGTCACTCTGTAATGCAAGTGCTTTCTCTCCGCGGATCCAACCTCATCGAGGTAATGGATGCGAAAGGAGAGAAATCATTGGCGCTGTTTCCAGCTAAGTTTTCAAAGAGCATGTGGATAAAGCGAGGGAGTTTTGTTGTGGTTGATGCAAGTGGGAAGGAGAAGGTTCTTGAATCTGGAAGCAAGGTGGCATGCATTGTTTCGCAAGTTCTGTTTTACGAACAAGTTCGGGTTACTGAAGAAATCACCAGACTGTGTTTGATCTTTCAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

eIF-1a

Protein Analysis

129

Amino Acids

14.36

Weight (kDa)

9.55

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40780 AT2G40780
fragaria_vesca	FvH4_4g04970 FvH4_7g26120
malus_domestica	MD01G1169400.v1.1
prunus_persica	Prupe.2G265600_v2.0.a1
pyrus_communis	pycom01g18210 pycom07g21280
rosa_chinensis	RchiOBHm_Chr1g0372561
rosa_laevigata	RLG00000026891
rosa_multiflora	Rmu_co8142570.1_g000001 Rmu_sc0011709.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284850
rosa_rugosa	Rorug01G0372800
rosa_samantha	Rh1AG381300 Rh1BG344700 Rh1CG358100
rosa_wichuraiana	Rw1G033530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
AccII	CGCG	1 cut(s)	144
AciI	CCGC	3 cut(s)	80, 142, 144
AclI	AACGTT	1 cut(s)	101
AclWI	GGATC	2 cut(s)	141, 154
AcuI	CTGAAG	2 cut(s)	92, 369
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	216, 284, 380
AluBI	AGCT	2 cut(s)	96, 206
AluI	AGCT	2 cut(s)	96, 206
AlwI	GGATC	2 cut(s)	141, 154
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	349
BamHI	GGATCC	1 cut(s)	146
BccI	CCATC	1 cut(s)	104
BfoI	RGCGCY	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	148
BmsI	GCATC	2 cut(s)	160, 247
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	146, 372
BspACI	CCGC	3 cut(s)	80, 142, 144
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	2 cut(s)	141, 154
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	146, 372
Bst4CI	ACNGT	2 cut(s)	11, 366
Bst6I	CTCTTC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	142
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	2 cut(s)	149, 375
BstMBI	GATC	2 cut(s)	146, 372
BstNSI	RCATGY	2 cut(s)	226, 306
BstUI	CGCG	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	1 cut(s)	196
Cfr42I	CCGCGG	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	2 cut(s)	223, 303
CviJI	RGCY	2 cut(s)	96, 206
CviKI_1	RGCY	2 cut(s)	96, 206
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	2 cut(s)	148, 374
DpnII	GATC	2 cut(s)	146, 372
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco57I	CTGAAG	2 cut(s)	92, 369
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoT22I	ATGCAT	1 cut(s)	308
FaeI	CATG	2 cut(s)	226, 306
FaiI	YATR	4 cut(s)	18, 33, 224, 304
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	222, 302
FokI	GGATG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	197
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	226, 306
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	2 cut(s)	67, 284
HphI	GGTGA	1 cut(s)	349
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	2 cut(s)	281, 288
HpyAV	CCTTC	3 cut(s)	54, 262, 268
HpyCH4III	ACNGT	2 cut(s)	11, 366
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	3 cut(s)	127, 260, 306
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	226, 306
HspAI	GCGC	1 cut(s)	194
KspI	CCGCGG	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	146, 372
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	36, 216, 273, 373
LweI	GCATC	2 cut(s)	160, 247
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	3 cut(s)	3, 113, 343
MalI	GATC	2 cut(s)	148, 374
MboI	GATC	2 cut(s)	146, 372
MboII	GAAGA	4 cut(s)	76, 85, 119, 362
MflI	RGATCY	1 cut(s)	146
MluCI	AATT	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	5 cut(s)	50, 69, 154, 164, 230
Mph1103I	ATGCAT	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	144
NdeII	GATC	2 cut(s)	146, 372
NlaIII	CATG	2 cut(s)	226, 306
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	3, 113
NsiI	ATGCAT	1 cut(s)	308
NspI	RCATGY	2 cut(s)	226, 306
PaeI	GCATGC	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	67, 284
PsiI	TTATAA	1 cut(s)	33
Psp1406I	AACGTT	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SacII	CCGCGG	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	98
Sau3AI	GATC	2 cut(s)	146, 372
SetI	ASST	7 cut(s)	98, 104, 156, 165, 208, 279, 300
SfaNI	GCATC	2 cut(s)	160, 247
Sfr303I	CCGCGG	1 cut(s)	145
SgrBI	CCGCGG	1 cut(s)	145
SphI	GCATGC	1 cut(s)	306
Sse9I	AATT	1 cut(s)	34
SsiI	CCGC	3 cut(s)	80, 142, 144
TaaI	ACNGT	2 cut(s)	11, 366
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	34
TfiI	GAWTC	2 cut(s)	67, 284
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	2 cut(s)	3, 113
Tsp45I	GTSAC	2 cut(s)	3, 113
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	14
XagI	CCTNNNNNAGG	1 cut(s)	158
XceI	RCATGY	2 cut(s)	226, 306
XmnI	GAANNNNTTC	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.