pycom01g18210

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013252
Physical Location & Seq
Forward (+)
17284189 .. 17285502
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18210.1

Sequence Viewer

Length: 510 bp
ATGAAAGGAGGAAGGAAGAATCTGAAGAGGGCGGTGGAGCAACAGAGCTTTACGCTCGAAGATGGTCACTCTGTAATGCAGGTGCTTTCTCTCCGCGGCTCGAATCTCATCGAGGTAATGGATGCAAAGGGAGAGAAATCTTTGGCGCTGTTTCCGGCCAAGTTTTCAAAGAGCATGTGGATTAAACGAGGGAGTTATGTTGTGGTTGATGCGAGTGGGAAGGAGAAGGTTCTTGAATCTGGCAGCAAGGTGGCATGCATTGTTTCGCAAGTTCTATTTTACGAACAAGTACGAGTGCTGAAGAAATCGCCAGACTGGCCAGAACTCTTCAAATCCGAAGTTTCAGACGGATGCGATGGAAGTTTGCAGGGAGATACCTCCCAAAAAGAAGACAATGAGCTCGACGACTCAAGCGATGATGATGGACTTCCTCCACTAGAGGCCAATACAAACAGGAATAAACCAGCTGACTGGAAATCGGATACAGAATCGGATTCCGATTCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
eIF-1a

Protein Analysis

170

Amino Acids

18.61

Weight (kDa)

4.85

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-1a PF01176 24 - 73 7.7e-11 Translation initiation factor 1A / IF-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40780 AT2G40780
fragaria_vesca FvH4_4g04970 FvH4_7g26120
malus_domestica MD01G1169400.v1.1
prunus_persica Prupe.2G265600_v2.0.a1
pyrus_communis pycom01g18210 pycom07g21280
rosa_chinensis RchiOBHm_Chr1g0372561
rosa_laevigata RLG00000026891
rosa_multiflora Rmu_co8142570.1_g000001 Rmu_sc0011709.1_g000001
rosa_roxburghii Rroxscaffold_4G00284850
rosa_rugosa Rorug01G0372800
rosa_samantha Rh1AG381300 Rh1BG344700 Rh1CG358100
rosa_wichuraiana Rw1G033530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
AccII CGCG 1 cut(s) 96
AciI CCGC 3 cut(s) 32, 94, 96
AcoI YGGCCR 2 cut(s) 156, 317
AcuI CTGAAG 2 cut(s) 44, 320
AfaI GTAC 1 cut(s) 291
AgsI TTSAA 4 cut(s) 168, 236, 331, 504
AluBI AGCT 3 cut(s) 48, 400, 467
AluI AGCT 3 cut(s) 48, 400, 467
Alw21I GWGCWC 1 cut(s) 402
AoxI GGCC 3 cut(s) 156, 317, 441
ApeKI GCWGC 1 cut(s) 243
AspLEI GCGC 1 cut(s) 148
BalI TGGCCA 1 cut(s) 319
BanII GRGCYC 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 255
BccI CCATC 3 cut(s) 56, 350, 416
BciVI GTATCC 1 cut(s) 475
BfaI CTAG 1 cut(s) 437
BfoI RGCGCY 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 70
BfuI GTATCC 1 cut(s) 475
BglI GCCNNNNNGGC 1 cut(s) 316
BisI GCNGC 2 cut(s) 97, 244
BlsI GCNGC 2 cut(s) 98, 245
BmsI GCATC 3 cut(s) 112, 199, 341
BpiI GAAGAC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 320, 476
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 2 cut(s) 127, 356
BseNI ACTGG 2 cut(s) 320, 476
BseXI GCAGC 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 3 cut(s) 158, 319, 443
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 1 cut(s) 155
BsnI GGCC 3 cut(s) 158, 319, 443
Bsp1286I GDGCHC 1 cut(s) 402
BspACI CCGC 3 cut(s) 32, 94, 96
BspANI GGCC 3 cut(s) 158, 319, 443
BspFNI CGCG 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 70
BsrI ACTGG 2 cut(s) 320, 476
BssECI CCNNGG 1 cut(s) 94
Bst6I CTCTTC 2 cut(s) 20, 332
BstC8I GCNNGC 1 cut(s) 256
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 127, 356
BstFNI CGCG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNSI RCATGY 2 cut(s) 178, 258
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 396
BstXI CCANNNNNNTGG 1 cut(s) 471
BsuI GTATCC 1 cut(s) 475
BsuRI GGCC 3 cut(s) 158, 319, 443
BtgI CCRYGG 1 cut(s) 94
BtgZI GCGATG 2 cut(s) 369, 429
BtsCI GGATG 2 cut(s) 127, 356
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 148
Cfr42I CCGCGG 1 cut(s) 97
Csp6I GTAC 1 cut(s) 290
CviAII CATG 2 cut(s) 175, 255
CviJI RGCY 7 cut(s) 48, 99, 158, 319, 400, 443, 467
CviKI_1 RGCY 7 cut(s) 48, 99, 158, 319, 400, 443, 467
CviQI GTAC 1 cut(s) 290
EaeI YGGCCR 2 cut(s) 156, 317
Eam1104I CTCTTC 2 cut(s) 20, 332
EarI CTCTTC 2 cut(s) 20, 332
Ecl136II GAGCTC 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 2 cut(s) 44, 320
EcoICRI GAGCTC 1 cut(s) 400
EcoT22I ATGCAT 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 402
FaeI CATG 2 cut(s) 178, 258
FaiI YATR 4 cut(s) 176, 198, 256, 508
FatI CATG 2 cut(s) 174, 254
Fnu4HI GCNGC 2 cut(s) 97, 244
FokI GGATG 2 cut(s) 134, 363
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 2 cut(s) 97, 244
FspBI CTAG 1 cut(s) 437
GlaI GCGC 1 cut(s) 147
GluI GCNGC 2 cut(s) 97, 244
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 3 cut(s) 158, 319, 443
HapII CCGG 1 cut(s) 155
HhaI GCGC 1 cut(s) 148
Hin1II CATG 2 cut(s) 178, 258
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HinfI GANTC 7 cut(s) 19, 103, 236, 407, 488, 494, 500
HpaII CCGG 1 cut(s) 155
Hpy188I TCNGA 6 cut(s) 24, 337, 346, 481, 493, 499
Hpy188III TCNNGA 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 3 cut(s) 6, 214, 220
HpyCH4V TGCA 4 cut(s) 79, 125, 258, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
Hsp92II CATG 2 cut(s) 178, 258
HspAI GCGC 1 cut(s) 146
KspI CCGCGG 1 cut(s) 97
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 3 cut(s) 112, 199, 341
MaeI CTAG 1 cut(s) 437
MaeIII GTNAC 1 cut(s) 65
MboII GAAGA 6 cut(s) 28, 37, 71, 313, 319, 401
MhlI GDGCHC 1 cut(s) 402
MlsI TGGCCA 1 cut(s) 319
MluNI TGGCCA 1 cut(s) 319
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 6 cut(s) 21, 106, 182, 388, 433, 441
Mox20I TGGCCA 1 cut(s) 319
Mph1103I ATGCAT 1 cut(s) 260
MscI TGGCCA 1 cut(s) 319
MseI TTAA 1 cut(s) 183
Msp20I TGGCCA 1 cut(s) 319
MspA1I CMGCKG 2 cut(s) 96, 467
MspI CCGG 1 cut(s) 155
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 316
NlaIII CATG 2 cut(s) 178, 258
NmuCI GTSAC 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 260
NspI RCATGY 2 cut(s) 178, 258
PaeI GCATGC 1 cut(s) 258
PaqCI CACCTGC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PfeI GAWTC 6 cut(s) 19, 103, 236, 488, 494, 500
PkrI GCNGC 2 cut(s) 98, 245
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 402
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
SacI GAGCTC 1 cut(s) 402
SacII CCGCGG 1 cut(s) 97
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 2 cut(s) 97, 244
SchI GAGTC 1 cut(s) 401
SduI GDGCHC 1 cut(s) 402
SetI ASST 8 cut(s) 50, 84, 117, 231, 252, 380, 402, 469
SfaNI GCATC 3 cut(s) 112, 199, 341
Sfr303I CCGCGG 1 cut(s) 97
SgrBI CCGCGG 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
SphI GCATGC 1 cut(s) 258
SsiI CCGC 3 cut(s) 32, 94, 96
SspMI CTAG 1 cut(s) 437
SstI GAGCTC 1 cut(s) 402
TaqI TCGA 4 cut(s) 57, 101, 111, 402
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 6 cut(s) 19, 103, 236, 488, 494, 500
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 243
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 363
XceI RCATGY 2 cut(s) 178, 258
XspI CTAG 1 cut(s) 437
Zsp2I ATGCAT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.