FvH4_7g28130

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015385
Physical Location & Seq
Reverse (-)
20890203 .. 20891801
1599 bp
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UTR
Exon/CDS
Intron
FvH4_7g28130.t1

Sequence Viewer

Length: 642 bp
ATGGCTTGCTGGTCTGCTGAGAATGCAACAAAGGCTTACCTTAAATCCTTGAAGCTGGGCCGAAAAGCCAATGAGCCAGATGTGGTTGAGTTTGTTTCAGCACTAGCTGCAGGCAACAATGCACAACTAATGGTTGTGGCGTGTTCCGGTGCAGCTGACTACACCACACTAGCCTTGGTTGCGGCAGCGCAGCAAACCGGAGGGCGTGTGGTGTGCATTCTCCGCGGTAATGAAGAGCTGCACATGTCTGAGAAAGTCCTTGGCGTGACGAATTTGCGTCACATTGATTTTGTGATTGGGGAGGCCCAAAGTCTTGTGCTGAACTATTACAAGGAGGCTGATTTTGTGGTGATTGATTGCAACCTTGAGAACCATGAGGGGATACTAAGGGCGGTGCAAATGGGGAAGAAGCAAAATGGGGCGGTTGTTGTGGGGGCTAATGCCTTTACCAAAGGGTCATGGCGGTCCGGTGGGGCGAAAACTCAGCTGTTGCCTATAGGGGGAGGATTGCTAGTGACAAGAATTGCAGCTAGTACTACTGAAAGGAGGAAGTCTCAATGGGTTGTGAAGGTTGACAAATGCACAGGTGAAGAGCATGTTTTCAGGGTTAGGTTTCCTCATGGGAAAGGGATTCAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

214

Amino Acids

22.88

Weight (kDa)

9.13

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 3 - 202 3.8e-28 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015385)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62280
fragaria_vesca FvH4_7g28130
malus_domestica MD01G1185000.v1.1 MD07G1257300.v1.1
prunus_persica Prupe.2G281500_v2.0.a1
pyrus_communis pycom01g19670
rosa_chinensis RchiOBHm_Chr1g0375051
rosa_laevigata RLG00000026692 RLG00000026693
rosa_roxburghii Rroxscaffold_4G00283060
rosa_rugosa Rorug01G0387800
rosa_samantha Rh1AG398400 Rh1BG362300 Rh1CG376000 Rh1DG393300
rosa_wichuraiana Rw1G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 225
AciI CCGC 6 cut(s) 182, 223, 225, 392, 422, 463
AcsI RAATTY 1 cut(s) 271
AfaI GTAC 1 cut(s) 535
AfiI CCNNNNNNNGG 1 cut(s) 500
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 2 cut(s) 52, 635
AluBI AGCT 6 cut(s) 55, 107, 155, 238, 487, 530
AluI AGCT 6 cut(s) 55, 107, 155, 238, 487, 530
Alw26I GTCTC 1 cut(s) 558
AoxI GGCC 2 cut(s) 58, 303
ApeKI GCWGC 6 cut(s) 107, 152, 185, 190, 238, 527
ApoI RAATTY 1 cut(s) 271
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 3 cut(s) 58, 304, 465
AsuHPI GGTGA 2 cut(s) 361, 599
AvaII GGWCC 1 cut(s) 465
BbvI GCAGC 6 cut(s) 94, 164, 197, 202, 225, 539
BciVI GTATCC 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 4 cut(s) 104, 170, 512, 531
BfmI CTRYAG 2 cut(s) 108, 495
BfuI GTATCC 1 cut(s) 375
BisI GCNGC 7 cut(s) 108, 153, 183, 186, 191, 239, 528
BlsI GCNGC 7 cut(s) 109, 154, 184, 187, 192, 240, 529
BmcAI AGTACT 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 465
BmgT120I GGNCC 3 cut(s) 58, 304, 465
BplI GAGNNNNNCTC 2 cut(s) 538, 570
BpuEI CTTGAG 1 cut(s) 386
BsaJI CCNNGG 3 cut(s) 174, 223, 259
BsaWI WCCGGW 3 cut(s) 146, 197, 467
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 500
BseDI CCNNGG 3 cut(s) 174, 223, 259
BseLI CCNNNNNNNGG 1 cut(s) 500
BseMII CTCAG 3 cut(s) 9, 240, 497
BseXI GCAGC 6 cut(s) 94, 164, 197, 202, 225, 539
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 2 cut(s) 171, 224
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 2 cut(s) 60, 305
BsiSI CCGG 3 cut(s) 147, 198, 468
BslI CCNNNNNNNGG 1 cut(s) 500
BsmAI GTCTC 1 cut(s) 558
BsmI GAATGC 2 cut(s) 28, 216
BsnI GGCC 2 cut(s) 60, 305
BspACI CCGC 6 cut(s) 182, 223, 225, 392, 422, 463
BspANI GGCC 2 cut(s) 60, 305
BspCNI CTCAG 3 cut(s) 10, 241, 496
BspFNI CGCG 1 cut(s) 225
BspMAI CTGCAG 1 cut(s) 112
BspQI GCTCTTC 2 cut(s) 228, 585
BssECI CCNNGG 3 cut(s) 174, 223, 259
BssT1I CCWWGG 2 cut(s) 174, 259
Bst6I CTCTTC 2 cut(s) 228, 585
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 7, 112
BstDEI CTNAG 4 cut(s) 18, 249, 386, 483
BstDSI CCRYGG 1 cut(s) 223
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 558
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 107, 179, 222
BstNSI RCATGY 2 cut(s) 247, 599
BstSFI CTRYAG 2 cut(s) 108, 495
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 6 cut(s) 94, 164, 197, 202, 225, 539
BsuI GTATCC 1 cut(s) 375
BsuRI GGCC 2 cut(s) 60, 305
BtgI CCRYGG 1 cut(s) 223
Cac8I GCNNGC 2 cut(s) 7, 112
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 3 cut(s) 58, 304, 465
Cfr42I CCGCGG 1 cut(s) 226
CpoI CGGWCCG 1 cut(s) 465
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 534
CspI CGGWCCG 1 cut(s) 465
CviAII CATG 5 cut(s) 244, 374, 459, 596, 620
CviQI GTAC 1 cut(s) 534
DdeI CTNAG 4 cut(s) 18, 249, 386, 483
Eam1104I CTCTTC 2 cut(s) 228, 585
EarI CTCTTC 2 cut(s) 228, 585
Eco130I CCWWGG 2 cut(s) 174, 259
Eco47I GGWCC 1 cut(s) 465
EcoT14I CCWWGG 2 cut(s) 174, 259
ErhI CCWWGG 2 cut(s) 174, 259
FaeI CATG 5 cut(s) 247, 377, 462, 599, 623
FaiI YATR 7 cut(s) 245, 375, 460, 497, 597, 621, 640
FatI CATG 5 cut(s) 243, 373, 458, 595, 619
Fnu4HI GCNGC 7 cut(s) 108, 153, 183, 186, 191, 239, 528
Fsp4HI GCNGC 7 cut(s) 108, 153, 183, 186, 191, 239, 528
FspBI CTAG 4 cut(s) 104, 170, 512, 531
GlaI GCGC 1 cut(s) 189
GluI GCNGC 7 cut(s) 108, 153, 183, 186, 191, 239, 528
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 2 cut(s) 60, 305
HapII CCGG 3 cut(s) 147, 198, 468
HgaI GACGC 1 cut(s) 266
HhaI GCGC 1 cut(s) 190
Hin1II CATG 5 cut(s) 247, 377, 462, 599, 623
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 1 cut(s) 631
HpaII CCGG 3 cut(s) 147, 198, 468
HphI GGTGA 2 cut(s) 361, 599
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 574
HpyAV CCTTC 1 cut(s) 562
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 107, 179, 222
HpyF3I CTNAG 4 cut(s) 18, 249, 386, 483
Hsp92II CATG 5 cut(s) 247, 377, 462, 599, 623
HspAI GCGC 1 cut(s) 188
KspI CCGCGG 1 cut(s) 226
LguI GCTCTTC 2 cut(s) 228, 585
LpnPI CCDG 8 cut(s) 41, 90, 96, 160, 211, 481, 570, 589
Lsp1109I GCAGC 6 cut(s) 94, 164, 197, 202, 225, 539
MaeI CTAG 4 cut(s) 104, 170, 512, 531
MaeIII GTNAC 3 cut(s) 265, 278, 514
MboII GAAGA 3 cut(s) 245, 418, 602
MluCI AATT 2 cut(s) 271, 522
MnlI CCTC 7 cut(s) 194, 295, 328, 370, 497, 540, 627
MseI TTAA 1 cut(s) 42
MspA1I CMGCKG 3 cut(s) 155, 225, 487
MspI CCGG 3 cut(s) 147, 198, 468
Mva1269I GAATGC 2 cut(s) 28, 216
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 107, 179, 222
NlaIII CATG 5 cut(s) 247, 377, 462, 599, 623
NmuCI GTSAC 3 cut(s) 265, 278, 514
NspI RCATGY 2 cut(s) 247, 599
PciI ACATGT 1 cut(s) 243
PciSI GCTCTTC 2 cut(s) 228, 585
PctI GAATGC 2 cut(s) 28, 216
PfeI GAWTC 1 cut(s) 631
PkrI GCNGC 7 cut(s) 109, 154, 184, 187, 192, 240, 529
PscI ACATGT 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 55
PspPI GGNCC 3 cut(s) 58, 304, 465
PstI CTGCAG 1 cut(s) 112
PvuII CAGCTG 2 cut(s) 155, 487
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
Rsr2I CGGWCCG 1 cut(s) 465
RsrII CGGWCCG 1 cut(s) 465
SacII CCGCGG 1 cut(s) 226
SapI GCTCTTC 2 cut(s) 228, 585
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 7 cut(s) 108, 153, 183, 186, 191, 239, 528
Sau96I GGNCC 3 cut(s) 58, 304, 465
ScaI AGTACT 1 cut(s) 535
SfcI CTRYAG 2 cut(s) 108, 495
Sfr303I CCGCGG 1 cut(s) 226
SgrBI CCGCGG 1 cut(s) 226
SinI GGWCC 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 2 cut(s) 271, 522
SsiI CCGC 6 cut(s) 182, 223, 225, 392, 422, 463
SspMI CTAG 4 cut(s) 104, 170, 512, 531
StyI CCWWGG 2 cut(s) 174, 259
TasI AATT 2 cut(s) 271, 522
TatI WGTACW 1 cut(s) 533
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 631
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseFI GTSAC 3 cut(s) 265, 278, 514
TseI GCWGC 6 cut(s) 107, 152, 185, 190, 238, 527
Tsp45I GTSAC 3 cut(s) 265, 278, 514
TspDTI ATGAA 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 465
XapI RAATTY 1 cut(s) 271
XceI RCATGY 2 cut(s) 247, 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 4 cut(s) 104, 170, 512, 531
ZrmI AGTACT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.