Prupe.2G281500_v2.0.a1

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015385
Physical Location & Seq
Reverse (-)
28025741 .. 28026880
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G281500.1

Sequence Viewer

Length: 675 bp
ATGGCTTGCTGGTCTGCTGAGAATGCCACAAAAGCCTACCTCAAAACCTTAAAAATGGGCCAGAAGGCAAACGAGCCAGATGTGGTTGAGTTCATTTCAGCTCTAGCAGCCGGGAACAATGCACAGCAAATGGTTGTGGCTTGTGCTGGCGCTGCTGACTCCACCATTCTAGCCCTTGTTGCTGCTGCTCAGCAAACTGGCGGCAGAGTGGTCTGCATCCTTCGTGGGAACGAAGAGATGCAGTTATCTGAGAAAATCCTTGGCATCAATGTATGTCACATTGAATTTGTGATTGGGGAGGCCCAAAATCTTCTTCTAAACTACTACAAGGAGGCTGATTTTGTGCTCATTGATTGCAACCTTAAGAACCATGAGGCCATTCTTAGAGCAGTGCAGATGGGGAAGAAGCAAAATGGAGCTATTGTTGCGGGGAATAACGCTTTTGGCAAAGGGTCGTGGCGGTCCGGCGGATCGAGAACTCAGTTGCTGCCTATAGGAGGTGGATTGTTGGTGACAAGAATTGCAGCACCAAAGAATGAAAGCAGCAAAATGGTTGGGATCAATGGTAGTGGAAAAAAGAGCCATTGGGTTGTCAAGGTAGATAAGTGCACAGGTGAAGAGCATGTGTTTAGGGTCAGATCATCATTTCCACAAGGGAAGGGGATCGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

225

Amino Acids

23.8

Weight (kDa)

9.15

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015385)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62280
fragaria_vesca FvH4_7g28130
malus_domestica MD01G1185000.v1.1 MD07G1257300.v1.1
prunus_persica Prupe.2G281500_v2.0.a1
pyrus_communis pycom01g19670
rosa_chinensis RchiOBHm_Chr1g0375051
rosa_laevigata RLG00000026692 RLG00000026693
rosa_roxburghii Rroxscaffold_4G00283060
rosa_rugosa Rorug01G0387800
rosa_samantha Rh1AG398400 Rh1BG362300 Rh1CG376000 Rh1DG393300
rosa_wichuraiana Rw1G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 201, 428, 460, 468
AclWI GGATC 3 cut(s) 478, 566, 671
AcsI RAATTY 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 497
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 1 cut(s) 284
AjuI GAANNNNNNNTTGG 4 cut(s) 276, 297, 308, 329
AluBI AGCT 2 cut(s) 101, 419
AluI AGCT 2 cut(s) 101, 419
Alw21I GWGCWC 2 cut(s) 348, 611
Alw44I GTGCAC 1 cut(s) 607
AlwI GGATC 3 cut(s) 478, 566, 671
AlwNI CAGNNNCTG 1 cut(s) 487
AoxI GGCC 3 cut(s) 58, 300, 375
ApaLI GTGCAC 1 cut(s) 607
ApeKI GCWGC 8 cut(s) 107, 152, 182, 185, 487, 524, 543, 668
ApoI RAATTY 1 cut(s) 284
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 3 cut(s) 58, 301, 462
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 523, 626
AvaII GGWCC 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 611
Bbv12I GWGCWC 2 cut(s) 348, 611
BbvI GCAGC 7 cut(s) 119, 139, 169, 172, 474, 536, 555
BccI CCATC 1 cut(s) 391
BcnI CCSGG 1 cut(s) 112
BfaI CTAG 2 cut(s) 104, 170
BfmI CTRYAG 1 cut(s) 492
BfoI RGCGCY 1 cut(s) 153
BfrI CTTAAG 1 cut(s) 362
BisI GCNGC 9 cut(s) 108, 153, 183, 186, 202, 488, 525, 544, 669
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 9 cut(s) 109, 154, 184, 187, 203, 489, 526, 545, 670
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 462
BmgT120I GGNCC 3 cut(s) 58, 301, 462
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 3 cut(s) 225, 228, 273
Bpu1102I GCTNAGC 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 4 cut(s) 9, 203, 240, 494
BseNI ACTGG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 7 cut(s) 119, 139, 169, 172, 474, 536, 555
BsgI GTGCAG 1 cut(s) 413
BshFI GGCC 3 cut(s) 60, 302, 377
BsiHKAI GWGCWC 2 cut(s) 348, 611
BsiSI CCGG 2 cut(s) 111, 465
BslI CCNNNNNNNGG 1 cut(s) 497
BsmI GAATGC 1 cut(s) 28
BsnI GGCC 3 cut(s) 60, 302, 377
Bsp1286I GDGCHC 2 cut(s) 348, 611
Bsp143I GATC 4 cut(s) 470, 558, 638, 663
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 4 cut(s) 201, 428, 460, 468
BspANI GGCC 3 cut(s) 60, 302, 377
BspCNI CTCAG 4 cut(s) 10, 202, 241, 493
BspPI GGATC 3 cut(s) 478, 566, 671
BspQI GCTCTTC 1 cut(s) 612
BspTI CTTAAG 1 cut(s) 362
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 4 cut(s) 470, 558, 638, 663
BssT1I CCWWGG 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 228, 612
BstAFI CTTAAG 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 7, 148
BstDEI CTNAG 5 cut(s) 18, 189, 249, 383, 480
BstENI CCTNNNNNAGG 1 cut(s) 495
BstF5I GGATG 1 cut(s) 216
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 4 cut(s) 473, 561, 641, 666
BstMBI GATC 4 cut(s) 470, 558, 638, 663
BstMWI GCNNNNNNNGC 6 cut(s) 23, 32, 107, 152, 179, 425
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 492
BstSLI GKGCMC 1 cut(s) 611
BstV1I GCAGC 7 cut(s) 119, 139, 169, 172, 474, 536, 555
BsuRI GGCC 3 cut(s) 60, 302, 377
BtsCI GGATG 1 cut(s) 216
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 2 cut(s) 7, 148
CaiI CAGNNNCTG 1 cut(s) 487
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 3 cut(s) 58, 301, 462
CpoI CGGWCCG 1 cut(s) 462
CspCI CAANNNNNGTGG 2 cut(s) 550, 585
CspI CGGWCCG 1 cut(s) 462
CviAII CATG 2 cut(s) 371, 623
DdeI CTNAG 5 cut(s) 18, 189, 249, 383, 480
DpnI GATC 4 cut(s) 472, 560, 640, 665
DpnII GATC 4 cut(s) 470, 558, 638, 663
Eam1104I CTCTTC 2 cut(s) 228, 612
EarI CTCTTC 2 cut(s) 228, 612
EciI GGCGGA 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 462
EcoNI CCTNNNNNAGG 1 cut(s) 495
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 2 cut(s) 374, 626
FaiI YATR 5 cut(s) 274, 372, 494, 624, 673
FatI CATG 2 cut(s) 370, 622
FauI CCCGC 1 cut(s) 421
Fnu4HI GCNGC 9 cut(s) 108, 153, 183, 186, 202, 488, 525, 544, 669
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 9 cut(s) 108, 153, 183, 186, 202, 488, 525, 544, 669
FspBI CTAG 2 cut(s) 104, 170
GlaI GCGC 1 cut(s) 151
GluI GCNGC 9 cut(s) 108, 153, 183, 186, 202, 488, 525, 544, 669
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 3 cut(s) 60, 302, 377
HapII CCGG 2 cut(s) 111, 465
HhaI GCGC 1 cut(s) 152
Hin1II CATG 2 cut(s) 374, 626
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 1 cut(s) 158
HpaII CCGG 2 cut(s) 111, 465
HphI GGTGA 2 cut(s) 523, 626
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 2 cut(s) 250, 638
Hpy188III TCNNGA 1 cut(s) 474
Hpy8I GTNNAC 1 cut(s) 609
HpyAV CCTTC 3 cut(s) 58, 230, 652
HpyCH4V TGCA 7 cut(s) 122, 216, 241, 357, 394, 524, 609
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 32, 107, 152, 179, 425
HpyF3I CTNAG 5 cut(s) 18, 189, 249, 383, 480
Hsp92II CATG 2 cut(s) 374, 626
HspAI GCGC 1 cut(s) 150
Kzo9I GATC 4 cut(s) 470, 558, 638, 663
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 7 cut(s) 74, 90, 124, 132, 183, 478, 597
Lsp1109I GCAGC 7 cut(s) 119, 139, 169, 172, 474, 536, 555
LweI GCATC 3 cut(s) 225, 228, 273
MaeI CTAG 2 cut(s) 104, 170
MaeIII GTNAC 2 cut(s) 275, 511
MalI GATC 4 cut(s) 472, 560, 640, 665
MboI GATC 4 cut(s) 470, 558, 638, 663
MboII GAAGA 5 cut(s) 245, 302, 305, 415, 629
MhlI GDGCHC 2 cut(s) 348, 611
MluCI AATT 2 cut(s) 284, 519
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 5 cut(s) 50, 292, 325, 367, 491
MseI TTAA 2 cut(s) 50, 363
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 2 cut(s) 111, 465
MspR9I CCNGG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 28
MwoI GCNNNNNNNGC 6 cut(s) 23, 32, 107, 152, 179, 425
NciI CCSGG 1 cut(s) 112
NdeII GATC 4 cut(s) 470, 558, 638, 663
NlaIII CATG 2 cut(s) 374, 626
NmuCI GTSAC 2 cut(s) 275, 511
NspI RCATGY 1 cut(s) 626
PciSI GCTCTTC 1 cut(s) 612
PctI GAATGC 1 cut(s) 28
PkrI GCNGC 9 cut(s) 109, 154, 184, 187, 203, 489, 526, 545, 670
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PspPI GGNCC 3 cut(s) 58, 301, 462
PstNI CAGNNNCTG 1 cut(s) 487
Rsr2I CGGWCCG 1 cut(s) 462
RsrII CGGWCCG 1 cut(s) 462
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 2 cut(s) 50, 363
SatI GCNGC 9 cut(s) 108, 153, 183, 186, 202, 488, 525, 544, 669
Sau3AI GATC 4 cut(s) 470, 558, 638, 663
Sau96I GGNCC 3 cut(s) 58, 301, 462
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 2 cut(s) 348, 611
SetI ASST 8 cut(s) 42, 50, 103, 363, 421, 502, 600, 616
SfaNI GCATC 3 cut(s) 225, 228, 273
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 2 cut(s) 284, 519
SsiI CCGC 4 cut(s) 201, 428, 460, 468
SspMI CTAG 2 cut(s) 104, 170
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 259
TaqI TCGA 1 cut(s) 473
TasI AATT 2 cut(s) 284, 519
TauI GCSGC 1 cut(s) 204
Tru1I TTAA 2 cut(s) 50, 363
Tru9I TTAA 2 cut(s) 50, 363
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 2 cut(s) 275, 511
TseI GCWGC 8 cut(s) 107, 152, 182, 185, 487, 524, 543, 668
Tsp45I GTSAC 2 cut(s) 275, 511
TspDTI ATGAA 2 cut(s) 82, 552
TspRI CASTG 1 cut(s) 396
Vha464I CTTAAG 1 cut(s) 362
VneI GTGCAC 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 462
XagI CCTNNNNNAGG 1 cut(s) 495
XapI RAATTY 1 cut(s) 284
XceI RCATGY 1 cut(s) 626
XspI CTAG 2 cut(s) 104, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.