Rh1BG362300

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015385
Physical Location & Seq
Reverse (-)
49243380 .. 49244534
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG362300.1

Sequence Viewer

Length: 654 bp
ATGGCTTGCTGGTCTGCTGAGAATGCCACAAAAGCCTACCTCAAATCCTTGAAACTGGGCCAAAAAGCAAATGAGCCAGACGTGGTTGAGTTCGTTTCAGCACTAGCCGCAGGCAACAATGCACAGCTAATGGTTGTGGCGTGTTCCGGTGCAGCTGACTATACCACACTAGCCCTGGTTGCGGCAGCACAGCAAACCGGAGGGCGTGTGGTGTGCATTCTCCCTGGCAATGAAGAACTGCGTATGTCTGAGAAAGTCCTTGGCATTAAAAATGTGCGTCACATTGATTTTGTGATTGGGGAGGCCCAAAGTCTTGTGTTGAACTATTGCAAGGAGGCTGATTTTGTGCTGATTGATTGTAACCTTGAGAACCATGAGGGGATTCTTAGGGCGGTGCAAATGAGGAAGAAGCAAAATGGGGCAGTTGTTGTGGGGACTAATGCCTTTTGCAAAGAGTCGTGGCGGTCCGGTGGGGCGAGGACTCAGTTGTTGCCTATAGGAGGAGGATTGTTAGTGACAAGAATCGCTGCTAGTGGTGGTTGTGGTACTATTGAGAGGAGGAAGTCCCAATGGGTTTCGAAAGTTGACAAATGCACAGGTGAAGAGCATGTTTTCAGGGTCAGGTTTCCACGAGGGAAAGGGATTCAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

217

Amino Acids

23.32

Weight (kDa)

9.06

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 3 - 206 8.5e-31 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015385)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62280
fragaria_vesca FvH4_7g28130
malus_domestica MD01G1185000.v1.1 MD07G1257300.v1.1
prunus_persica Prupe.2G281500_v2.0.a1
pyrus_communis pycom01g19670
rosa_chinensis RchiOBHm_Chr1g0375051
rosa_laevigata RLG00000026692 RLG00000026693
rosa_roxburghii Rroxscaffold_4G00283060
rosa_rugosa Rorug01G0387800
rosa_samantha Rh1AG398400 Rh1BG362300 Rh1CG376000 Rh1DG393300
rosa_wichuraiana Rw1G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 108, 182, 392, 463
AfaI GTAC 1 cut(s) 547
AfiI CCNNNNNNNGG 2 cut(s) 181, 500
AgsI TTSAA 3 cut(s) 52, 322, 647
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 2 cut(s) 174, 223
AluBI AGCT 2 cut(s) 127, 155
AluI AGCT 2 cut(s) 127, 155
AoxI GGCC 2 cut(s) 58, 303
ApeKI GCWGC 3 cut(s) 152, 185, 527
AspS9I GGNCC 3 cut(s) 58, 304, 465
AsuHPI GGTGA 1 cut(s) 611
AsuII TTCGAA 1 cut(s) 578
AvaII GGWCC 1 cut(s) 465
BauI CACGAG 1 cut(s) 630
BbvI GCAGC 3 cut(s) 164, 197, 514
BciT130I CCWGG 2 cut(s) 176, 225
BfaI CTAG 3 cut(s) 104, 170, 531
BfmI CTRYAG 1 cut(s) 495
BisI GCNGC 5 cut(s) 108, 153, 183, 186, 528
BlsI GCNGC 5 cut(s) 109, 154, 184, 187, 529
Bme1390I CCNGG 2 cut(s) 176, 225
Bme18I GGWCC 1 cut(s) 465
BmgBI CACGTC 1 cut(s) 82
BmgT120I GGNCC 3 cut(s) 58, 304, 465
BmrFI CCNGG 2 cut(s) 176, 225
BmrI ACTGGG 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 65
Bpu14I TTCGAA 1 cut(s) 578
BpuEI CTTGAG 1 cut(s) 386
BsaJI CCNNGG 3 cut(s) 174, 223, 259
BsaWI WCCGGW 3 cut(s) 146, 197, 467
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 500
Bse1I ACTGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 2 cut(s) 176, 225
BseDI CCNNGG 3 cut(s) 174, 223, 259
BseLI CCNNNNNNNGG 2 cut(s) 181, 500
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 3 cut(s) 9, 240, 497
BseNI ACTGG 1 cut(s) 60
BseRI GAGGAG 2 cut(s) 516, 571
BseXI GCAGC 3 cut(s) 164, 197, 514
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 2 cut(s) 60, 305
BsiSI CCGG 3 cut(s) 147, 198, 468
BslFI GGGAC 2 cut(s) 448, 550
BslI CCNNNNNNNGG 2 cut(s) 181, 500
BsmFI GGGAC 2 cut(s) 448, 550
BsmI GAATGC 2 cut(s) 28, 216
BsnI GGCC 2 cut(s) 60, 305
Bsp119I TTCGAA 1 cut(s) 578
BspACI CCGC 4 cut(s) 108, 182, 392, 463
BspANI GGCC 2 cut(s) 60, 305
BspCNI CTCAG 3 cut(s) 10, 241, 496
BspQI GCTCTTC 1 cut(s) 597
BspT104I TTCGAA 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 3 cut(s) 174, 223, 259
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 1 cut(s) 259
Bst2BI CACGAG 1 cut(s) 630
Bst2UI CCWGG 2 cut(s) 176, 225
Bst6I CTCTTC 1 cut(s) 597
BstBI TTCGAA 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 7, 112
BstDEI CTNAG 4 cut(s) 18, 249, 386, 483
BstENI CCTNNNNNAGG 1 cut(s) 498
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 107, 179
BstNI CCWGG 2 cut(s) 176, 225
BstNSI RCATGY 1 cut(s) 611
BstSCI CCNGG 2 cut(s) 174, 223
BstSFI CTRYAG 1 cut(s) 495
BstV1I GCAGC 3 cut(s) 164, 197, 514
BsuRI GGCC 2 cut(s) 60, 305
BtrI CACGTC 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 7, 112
Cfr13I GGNCC 3 cut(s) 58, 304, 465
CpoI CGGWCCG 1 cut(s) 465
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 546
CspI CGGWCCG 1 cut(s) 465
CviAII CATG 2 cut(s) 374, 608
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 4 cut(s) 18, 249, 386, 483
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Eco130I CCWWGG 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 465
EcoNI CCTNNNNNAGG 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 174, 223
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 2 cut(s) 377, 611
FaiI YATR 6 cut(s) 162, 245, 375, 497, 609, 652
FaqI GGGAC 2 cut(s) 448, 550
FatI CATG 2 cut(s) 373, 607
Fnu4HI GCNGC 5 cut(s) 108, 153, 183, 186, 528
Fsp4HI GCNGC 5 cut(s) 108, 153, 183, 186, 528
FspBI CTAG 3 cut(s) 104, 170, 531
GluI GCNGC 5 cut(s) 108, 153, 183, 186, 528
HaeIII GGCC 2 cut(s) 60, 305
HapII CCGG 3 cut(s) 147, 198, 468
HgaI GACGC 1 cut(s) 266
Hin1II CATG 2 cut(s) 377, 611
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 5 cut(s) 382, 455, 481, 522, 643
HpaII CCGG 3 cut(s) 147, 198, 468
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 586
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 7 cut(s) 122, 152, 216, 330, 397, 450, 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 107, 179
HpyF3I CTNAG 4 cut(s) 18, 249, 386, 483
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 377, 611
LguI GCTCTTC 1 cut(s) 597
Lsp1109I GCAGC 3 cut(s) 164, 197, 514
MaeI CTAG 3 cut(s) 104, 170, 531
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 3 cut(s) 278, 359, 514
MboII GAAGA 3 cut(s) 245, 418, 614
MlyI GAGTC 2 cut(s) 464, 475
MseI TTAA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 3 cut(s) 147, 198, 468
MspR9I CCNGG 2 cut(s) 176, 225
Mva1269I GAATGC 2 cut(s) 28, 216
MvaI CCWGG 2 cut(s) 176, 225
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 107, 179
NlaIII CATG 2 cut(s) 377, 611
NmuCI GTSAC 2 cut(s) 278, 514
NspI RCATGY 1 cut(s) 611
NspV TTCGAA 1 cut(s) 578
PciSI GCTCTTC 1 cut(s) 597
PctI GAATGC 2 cut(s) 28, 216
PfeI GAWTC 3 cut(s) 382, 522, 643
PkrI GCNGC 5 cut(s) 109, 154, 184, 187, 529
PleI GAGTC 2 cut(s) 463, 475
PpsI GAGTC 2 cut(s) 463, 475
Psp6I CCWGG 2 cut(s) 174, 223
PspGI CCWGG 2 cut(s) 174, 223
PspPI GGNCC 3 cut(s) 58, 304, 465
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
Rsr2I CGGWCCG 1 cut(s) 465
RsrII CGGWCCG 1 cut(s) 465
SapI GCTCTTC 1 cut(s) 597
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 5 cut(s) 108, 153, 183, 186, 528
Sau96I GGNCC 3 cut(s) 58, 304, 465
SchI GAGTC 2 cut(s) 464, 475
ScrFI CCNGG 2 cut(s) 176, 225
SetI ASST 7 cut(s) 42, 84, 129, 157, 366, 601, 626
SfcI CTRYAG 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 578
SinI GGWCC 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SsiI CCGC 4 cut(s) 108, 182, 392, 463
SspMI CTAG 3 cut(s) 104, 170, 531
StyD4I CCNGG 2 cut(s) 174, 223
StyI CCWWGG 1 cut(s) 259
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 578
TauI GCSGC 2 cut(s) 110, 185
TfiI GAWTC 3 cut(s) 382, 522, 643
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseFI GTSAC 2 cut(s) 278, 514
TseI GCWGC 3 cut(s) 152, 185, 527
Tsp45I GTSAC 2 cut(s) 278, 514
TspDTI ATGAA 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 465
XagI CCTNNNNNAGG 1 cut(s) 498
XceI RCATGY 1 cut(s) 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 3 cut(s) 104, 170, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.