Rorug01G0387800

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015385
Physical Location & Seq
Forward (+)
49903267 .. 49906893
3627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0387800.1

Sequence Viewer

Length: 990 bp
ATGAGGGGGGGCTGGATGAACCGGCGAGGGGTTCAGAGGTTCCGGCAGGCGCTGATCTCGACCGTCGGATCGGTGAAGATTAAGCTCGTGCTCGGATTCTGCATCGGCTTTACTCTCATCGCTCTCGCCGGCCGCGCTTCGGAGTTTATGGGATGGACGAGTCACACTGCTTCGCTGGAACGGTTCTCCGGTTCGAGGAAAGGATATGCTATTGTAATGAACACATGGAAGAGATATGATCTTTTGAAGCAGTCTATTTCTCACTATTCCAGATGTCCACGGCTTGATTCGATACATATTGTGTGGAGTGAGCCAAGTCCTCCATCAGATTCTCTGAAAAAATTTCTAAACCACATTATAGAGTTGAACACTAGAGATGGACGACAAGTTAAATTGAAATTCGATATCAATAAGGAAGACAGTTTGAACAACAGATTTAAAGAAATTCCAGATTTGGAAACGGATGCTGTCTTCTCTATTGATGATGATGTCATATTCCCTTGCTCTTCTGTAGAATTTGCTTTTGATGTTTGGCAAAGTGCATCAGATACTATGGTTGGCTTTGTGCCTCGTATGCACTGGGTTGATCCCACGAATGGTCATATGGATCATTACATATATGGTGGATGGTGGTCGGTTTGGTGGACTGGTACATACAGTATGGTACTCTCTAAGGCAGCCTTCTTCCACAAAAAGTACCTAAGACTCTACACAAATGAAATGCCAGCATCAATCAAAGAATTTGTAACCAAGAACAGGAACTGTGAAGACATTGCAATGTCTTTTCTTGTAGCAAATGTGACTGGTGCTCCCCCTATATGGGTTAAAGGTAAGATATTTGAGATTGGATCAACCGGAATCAGTAGCATGGGAGGACATACTGAAAAAAGAACCCACTGCGTTGATAGATTCGCCGCTGAGTTTGGGCGAATGCCATTGGTACCGACTTCTGTGAAAGCTGTCGACAGTCGCAACATCTGGTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

329

Amino Acids

37.65

Weight (kDa)

9.3

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_64 PF09258 69 - 322 3e-79 Glycosyl transferase family 64 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015385)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62280
fragaria_vesca FvH4_7g28130
malus_domestica MD01G1185000.v1.1 MD07G1257300.v1.1
prunus_persica Prupe.2G281500_v2.0.a1
pyrus_communis pycom01g19670
rosa_chinensis RchiOBHm_Chr1g0375051
rosa_laevigata RLG00000026692 RLG00000026693
rosa_roxburghii Rroxscaffold_4G00283060
rosa_rugosa Rorug01G0387800
rosa_samantha Rh1AG398400 Rh1BG362300 Rh1CG376000 Rh1DG393300
rosa_wichuraiana Rw1G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 940
AccB1I GGYRCC 1 cut(s) 940
AccI GTMKAC 1 cut(s) 963
AccII CGCG 1 cut(s) 135
AciI CCGC 2 cut(s) 133, 915
AclWI GGATC 4 cut(s) 76, 581, 615, 856
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 5 cut(s) 341, 398, 444, 515, 740
AfaI GTAC 4 cut(s) 652, 666, 698, 942
AfiI CCNNNNNNNGG 7 cut(s) 28, 139, 195, 596, 756, 819, 820
AgsI TTSAA 4 cut(s) 247, 367, 397, 427
AluBI AGCT 2 cut(s) 85, 959
AluI AGCT 2 cut(s) 85, 959
Alw21I GWGCWC 2 cut(s) 93, 811
AlwI GGATC 4 cut(s) 76, 581, 615, 856
AlwNI CAGNNNCTG 2 cut(s) 52, 762
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 677
ApoI RAATTY 5 cut(s) 341, 398, 444, 515, 740
Asp718I GGTACC 1 cut(s) 940
AspLEI GCGC 2 cut(s) 52, 137
AsuHPI GGTGA 1 cut(s) 85
BaeI ACNNNNGTAYC 2 cut(s) 540, 573
BanI GGYRCC 1 cut(s) 940
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 3 cut(s) 423, 463, 774
Bbv12I GWGCWC 2 cut(s) 93, 811
BbvI GCAGC 1 cut(s) 689
BccI CCATC 4 cut(s) 147, 331, 371, 621
BceAI ACGGC 1 cut(s) 296
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 510
BfoI RGCGCY 1 cut(s) 53
BisI GCNGC 3 cut(s) 133, 678, 915
BlsI GCNGC 3 cut(s) 134, 679, 916
BmiI GGNNCC 2 cut(s) 41, 942
BmrI ACTGGG 1 cut(s) 589
BmsI GCATC 4 cut(s) 111, 454, 551, 737
BmuI ACTGGG 1 cut(s) 589
BpiI GAAGAC 3 cut(s) 423, 463, 774
BsaJI CCNNGG 1 cut(s) 278
BsaWI WCCGGW 2 cut(s) 188, 854
BsaXI ACNNNNNCTCC 2 cut(s) 793, 823
Bsc4I CCNNNNNNNGG 7 cut(s) 28, 139, 195, 596, 756, 819, 820
Bse118I RCCGGY 2 cut(s) 21, 128
Bse1I ACTGG 3 cut(s) 584, 652, 808
Bse3DI GCAATG 2 cut(s) 771, 783
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 4 cut(s) 21, 158, 469, 632
BseLI CCNNNNNNNGG 7 cut(s) 28, 139, 195, 596, 756, 819, 820
BseMI GCAATG 2 cut(s) 771, 783
BseMII CTCAG 1 cut(s) 909
BseNI ACTGG 3 cut(s) 584, 652, 808
BseX3I CGGCCG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 689
Bsh1236I CGCG 1 cut(s) 135
Bsh1285I CGRYCG 2 cut(s) 63, 133
BshFI GGCC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 940
BsiEI CGRYCG 2 cut(s) 63, 133
BsiHKAI GWGCWC 2 cut(s) 93, 811
BsiSI CCGG 5 cut(s) 22, 43, 129, 189, 855
BslI CCNNNNNNNGG 7 cut(s) 28, 139, 195, 596, 756, 819, 820
BsmI GAATGC 1 cut(s) 936
BsnI GGCC 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 93, 811
Bsp143I GATC 6 cut(s) 54, 68, 238, 586, 607, 848
BspACI CCGC 2 cut(s) 133, 915
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 910
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 41, 942
BspPI GGATC 4 cut(s) 76, 581, 615, 856
BspQI GCTCTTC 1 cut(s) 511
BspT107I GGYRCC 1 cut(s) 940
BsrDI GCAATG 2 cut(s) 771, 783
BsrFI RCCGGY 2 cut(s) 21, 128
BsrI ACTGG 3 cut(s) 584, 652, 808
BssAI RCCGGY 2 cut(s) 21, 128
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 6 cut(s) 54, 68, 238, 586, 607, 848
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
Bst4CI ACNGT 6 cut(s) 64, 183, 422, 659, 764, 968
Bst6I CTCTTC 2 cut(s) 224, 511
BstC8I GCNNGC 3 cut(s) 48, 130, 726
BstDEI CTNAG 3 cut(s) 672, 701, 918
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 4 cut(s) 21, 158, 469, 632
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 2 cut(s) 52, 137
BstKTI GATC 6 cut(s) 57, 71, 241, 589, 610, 851
BstMBI GATC 6 cut(s) 54, 68, 238, 586, 607, 848
BstMCI CGRYCG 2 cut(s) 63, 133
BstMWI GCNNNNNNNGC 2 cut(s) 134, 574
BstSFI CTRYAG 1 cut(s) 510
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 689
BstV2I GAAGAC 3 cut(s) 423, 463, 774
BstZI CGGCCG 1 cut(s) 130
BsuRI GGCC 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 278
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 4 cut(s) 21, 158, 469, 632
BtsI GCAGTG 2 cut(s) 165, 895
BtsIMutI CAGTG 3 cut(s) 165, 577, 895
Cac8I GCNNGC 3 cut(s) 48, 130, 726
CaiI CAGNNNCTG 2 cut(s) 52, 762
CfoI GCGC 2 cut(s) 52, 137
Cfr10I RCCGGY 2 cut(s) 21, 128
Csp6I GTAC 4 cut(s) 651, 665, 697, 941
CviAII CATG 2 cut(s) 225, 868
CviJI RGCY 9 cut(s) 12, 85, 108, 132, 283, 313, 561, 680, 959
CviKI_1 RGCY 9 cut(s) 12, 85, 108, 132, 283, 313, 561, 680, 959
CviQI GTAC 4 cut(s) 651, 665, 697, 941
DdeI CTNAG 3 cut(s) 672, 701, 918
DpnI GATC 6 cut(s) 56, 70, 240, 588, 609, 850
DpnII GATC 6 cut(s) 54, 68, 238, 586, 607, 848
DraI TTTAAA 1 cut(s) 439
EaeI YGGCCR 1 cut(s) 130
EagI CGGCCG 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 224, 511
EarI CTCTTC 2 cut(s) 224, 511
EclXI CGGCCG 1 cut(s) 130
Eco32I GATATC 1 cut(s) 406
Eco52I CGGCCG 1 cut(s) 130
EcoRV GATATC 1 cut(s) 406
FaeI CATG 2 cut(s) 228, 871
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FatI CATG 2 cut(s) 224, 867
FauNDI CATATG 1 cut(s) 603
FblI GTMKAC 1 cut(s) 963
Fnu4HI GCNGC 3 cut(s) 133, 678, 915
FokI GGATG 4 cut(s) 28, 165, 476, 639
Fsp4HI GCNGC 3 cut(s) 133, 678, 915
FspBI CTAG 1 cut(s) 372
GlaI GCGC 2 cut(s) 51, 136
GluI GCNGC 3 cut(s) 133, 678, 915
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 1 cut(s) 132
HapII CCGG 5 cut(s) 22, 43, 129, 189, 855
HhaI GCGC 2 cut(s) 52, 137
Hin1II CATG 2 cut(s) 228, 871
Hin6I GCGC 2 cut(s) 50, 135
HinP1I GCGC 2 cut(s) 50, 135
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HinfI GANTC 7 cut(s) 96, 160, 287, 329, 705, 858, 909
HpaII CCGG 5 cut(s) 22, 43, 129, 189, 855
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 3 cut(s) 278, 645, 964
Hpy188I TCNGA 7 cut(s) 36, 68, 95, 142, 328, 336, 547
Hpy188III TCNNGA 3 cut(s) 58, 270, 449
Hpy8I GTNNAC 3 cut(s) 278, 645, 964
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 691
HpyCH4III ACNGT 6 cut(s) 64, 183, 422, 659, 764, 968
HpyCH4V TGCA 4 cut(s) 102, 542, 577, 776
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 574
HpyF3I CTNAG 3 cut(s) 672, 701, 918
Hsp92II CATG 2 cut(s) 228, 871
HspAI GCGC 2 cut(s) 50, 135
KpnI GGTACC 1 cut(s) 944
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 6 cut(s) 54, 68, 238, 586, 607, 848
LguI GCTCTTC 1 cut(s) 511
LmnI GCTCC 1 cut(s) 814
Lsp1109I GCAGC 1 cut(s) 689
LweI GCATC 4 cut(s) 111, 454, 551, 737
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 3 cut(s) 161, 745, 799
MalI GATC 6 cut(s) 56, 70, 240, 588, 609, 850
MboI GATC 6 cut(s) 54, 68, 238, 586, 607, 848
MboII GAAGA 7 cut(s) 88, 241, 428, 463, 498, 676, 779
MhlI GDGCHC 2 cut(s) 93, 811
MluCI AATT 6 cut(s) 341, 392, 398, 444, 515, 740
MlyI GAGTC 2 cut(s) 169, 699
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 6 cut(s) 20, 30, 189, 330, 579, 866
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 4 cut(s) 81, 390, 438, 825
MslI CAYNNNNRTG 1 cut(s) 776
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 5 cut(s) 22, 43, 129, 189, 855
Mva1269I GAATGC 1 cut(s) 936
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 134, 574
NaeI GCCGGC 1 cut(s) 130
NdeI CATATG 1 cut(s) 603
NdeII GATC 6 cut(s) 54, 68, 238, 586, 607, 848
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 2 cut(s) 228, 871
NlaIV GGNNCC 2 cut(s) 41, 942
NmuCI GTSAC 2 cut(s) 161, 799
PciSI GCTCTTC 1 cut(s) 511
PctI GAATGC 1 cut(s) 936
PdiI GCCGGC 1 cut(s) 130
PfeI GAWTC 5 cut(s) 96, 287, 329, 858, 909
PkrI GCNGC 3 cut(s) 134, 679, 916
PleI GAGTC 2 cut(s) 168, 699
PpsI GAGTC 2 cut(s) 168, 699
PspN4I GGNNCC 2 cut(s) 41, 942
PstNI CAGNNNCTG 2 cut(s) 52, 762
RsaI GTAC 4 cut(s) 652, 666, 698, 942
RsaNI GTAC 4 cut(s) 651, 665, 697, 941
RseI CAYNNNNRTG 1 cut(s) 776
SalI GTCGAC 1 cut(s) 962
SapI GCTCTTC 1 cut(s) 511
SaqAI TTAA 4 cut(s) 81, 390, 438, 825
SatI GCNGC 3 cut(s) 133, 678, 915
Sau3AI GATC 6 cut(s) 54, 68, 238, 586, 607, 848
SchI GAGTC 2 cut(s) 169, 699
SduI GDGCHC 2 cut(s) 93, 811
SetI ASST 5 cut(s) 41, 87, 702, 832, 961
SfaNI GCATC 4 cut(s) 111, 454, 551, 737
SfcI CTRYAG 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 776
Sse9I AATT 6 cut(s) 341, 392, 398, 444, 515, 740
SsiI CCGC 2 cut(s) 133, 915
SspMI CTAG 1 cut(s) 372
TaaI ACNGT 6 cut(s) 64, 183, 422, 659, 764, 968
TaqI TCGA 5 cut(s) 59, 194, 290, 402, 963
TasI AATT 6 cut(s) 341, 392, 398, 444, 515, 740
TauI GCSGC 2 cut(s) 135, 917
TfiI GAWTC 5 cut(s) 96, 287, 329, 858, 909
Tru1I TTAA 4 cut(s) 81, 390, 438, 825
Tru9I TTAA 4 cut(s) 81, 390, 438, 825
TscAI CASTG 3 cut(s) 172, 584, 902
TseFI GTSAC 2 cut(s) 161, 799
TseI GCWGC 1 cut(s) 677
Tsp45I GTSAC 2 cut(s) 161, 799
TspDTI ATGAA 3 cut(s) 32, 233, 732
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 3 cut(s) 172, 584, 902
XapI RAATTY 5 cut(s) 341, 398, 444, 515, 740
XmiI GTMKAC 1 cut(s) 963
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.