pycom01g19670

Protein of unknown function (DUF1442)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0015385
Physical Location & Seq
Reverse (-)
18274977 .. 18275755
779 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g19670.1

Sequence Viewer

Length: 657 bp
ATGGCTTGCTGGTCTGCTGAGAATGCCACAAAAGCCTACCTCAATACCCTCAAAATGGGTCAGAAGGCAAACGAGCCAGATGTGATCGAGTTCATTTCAGCCCTAGCAGCAGGCAACAACGCACAGCTAATGGTTGTTGCATGCGCTGGAGCTGCCGACTCCAAAACCCTAGCCCTAGCTGCCGCTGCTCAGCAAACTGGCGGCAGAGTTGTATGCATTCTTCGCAGTAACGAAGACTTACACTTGTCTGAAAAAGTCCTCGGTGTCAACGTTTGTCACATTGAGTTTGTTATTGGAGAAGCTCAAAATCTTCTTTTAAATTACCACAAGGAGGCGGATTTCGTGCTCATCGATTGCAACCTCAAGAACCACGAGGCAGTTCTTAGAGCGGTACAGGTGGGGAGGAAGCATAACGGAGCTACTGTTGTGGGACATAACGCTTTCGGAAAAGGGTCGTGGCGGTCCGGTGGATCGAGGACTCAGTTGTTGCCTATCGGAGGAGGGTTGCTGGTTACAAGAATAGCAGCAGAAAATGATACTGCAAAAATGATTGGAAAAAAGAGTCATTGGGTTGTGAGGGTTGATAAATGCACCGGTGAAGAGCATGTGTTTAGGGTTAGATCATCGATTCCACATGGGAAAGGGATTTCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1442

Protein Analysis

219

Amino Acids

23.25

Weight (kDa)

8.93

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1442 PF07279 3 - 205 5.4e-30 Protein of unknown function (DUF1442)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015385)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62280
fragaria_vesca FvH4_7g28130
malus_domestica MD01G1185000.v1.1 MD07G1257300.v1.1
prunus_persica Prupe.2G281500_v2.0.a1
pyrus_communis pycom01g19670
rosa_chinensis RchiOBHm_Chr1g0375051
rosa_laevigata RLG00000026692 RLG00000026693
rosa_roxburghii Rroxscaffold_4G00283060
rosa_rugosa Rorug01G0387800
rosa_samantha Rh1AG398400 Rh1BG362300 Rh1CG376000 Rh1DG393300
rosa_wichuraiana Rw1G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 389
AciI CCGC 5 cut(s) 183, 201, 335, 389, 460
AclI AACGTT 1 cut(s) 270
AclWI GGATC 1 cut(s) 478
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 3 cut(s) 55, 331, 497
AgeI ACCGGT 1 cut(s) 593
AluBI AGCT 6 cut(s) 127, 152, 179, 302, 419, 653
AluI AGCT 6 cut(s) 127, 152, 179, 302, 419, 653
Alw21I GWGCWC 1 cut(s) 348
AlwI GGATC 1 cut(s) 478
ApeKI GCWGC 5 cut(s) 107, 152, 179, 185, 524
AsiGI ACCGGT 1 cut(s) 593
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 608
AvaII GGWCC 1 cut(s) 462
BarI GAAGNNNNNNTAC 2 cut(s) 204, 236
BauI CACGAG 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 5 cut(s) 119, 139, 166, 172, 536
BfaI CTAG 3 cut(s) 104, 170, 176
BisI GCNGC 7 cut(s) 108, 153, 180, 183, 186, 202, 525
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 7 cut(s) 109, 154, 181, 184, 187, 203, 526
Bme18I GGWCC 1 cut(s) 462
BmgT120I GGNCC 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 347
Bsa29I ATCGAT 2 cut(s) 351, 626
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 2 cut(s) 464, 593
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 331, 497
Bse118I RCCGGY 1 cut(s) 593
Bse1I ACTGG 1 cut(s) 202
BseCI ATCGAT 2 cut(s) 351, 626
BseDI CCNNGG 1 cut(s) 259
BseLI CCNNNNNNNGG 3 cut(s) 55, 331, 497
BseMII CTCAG 3 cut(s) 9, 203, 494
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 513
BseXI GCAGC 5 cut(s) 119, 139, 166, 172, 536
BshTI ACCGGT 1 cut(s) 593
BshVI ATCGAT 2 cut(s) 351, 626
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 2 cut(s) 465, 594
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 3 cut(s) 55, 331, 497
BsmFI GGGAC 1 cut(s) 444
BsmI GAATGC 2 cut(s) 28, 216
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 3 cut(s) 84, 470, 620
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 5 cut(s) 183, 201, 335, 389, 460
BspCNI CTCAG 3 cut(s) 10, 202, 493
BspDI ATCGAT 2 cut(s) 351, 626
BspPI GGATC 1 cut(s) 478
BspQI GCTCTTC 1 cut(s) 594
BsrBI CCGCTC 1 cut(s) 389
BsrFI RCCGGY 1 cut(s) 593
BsrI ACTGG 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 593
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 3 cut(s) 84, 470, 620
BssSI CACGAG 1 cut(s) 371
Bst2BI CACGAG 1 cut(s) 371
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 1 cut(s) 594
BstC8I GCNNGC 3 cut(s) 7, 112, 142
BstDEI CTNAG 5 cut(s) 18, 189, 383, 480, 654
BstENI CCTNNNNNAGG 1 cut(s) 495
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 3 cut(s) 87, 473, 623
BstMBI GATC 3 cut(s) 84, 470, 620
BstMWI GCNNNNNNNGC 7 cut(s) 23, 32, 107, 152, 179, 185, 222
BstNSI RCATGY 2 cut(s) 144, 608
BstV1I GCAGC 5 cut(s) 119, 139, 166, 172, 536
BstV2I GAAGAC 1 cut(s) 240
Bsu15I ATCGAT 2 cut(s) 351, 626
BsuTUI ATCGAT 2 cut(s) 351, 626
Cac8I GCNNGC 3 cut(s) 7, 112, 142
CfoI GCGC 1 cut(s) 146
Cfr10I RCCGGY 1 cut(s) 593
Cfr13I GGNCC 1 cut(s) 462
ClaI ATCGAT 2 cut(s) 351, 626
CpoI CGGWCCG 1 cut(s) 462
Csp6I GTAC 1 cut(s) 392
CspAI ACCGGT 1 cut(s) 593
CspI CGGWCCG 1 cut(s) 462
CviAII CATG 3 cut(s) 141, 605, 635
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 5 cut(s) 18, 189, 383, 480, 654
DpnI GATC 3 cut(s) 86, 472, 622
DpnII GATC 3 cut(s) 84, 470, 620
DraI TTTAAA 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
EciI GGCGGA 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 462
EcoNI CCTNNNNNAGG 1 cut(s) 495
EcoT22I ATGCAT 1 cut(s) 218
FaeI CATG 3 cut(s) 144, 608, 638
FaiI YATR 6 cut(s) 142, 214, 411, 435, 606, 636
FaqI GGGAC 1 cut(s) 444
FatI CATG 3 cut(s) 140, 604, 634
Fnu4HI GCNGC 7 cut(s) 108, 153, 180, 183, 186, 202, 525
Fsp4HI GCNGC 7 cut(s) 108, 153, 180, 183, 186, 202, 525
FspBI CTAG 3 cut(s) 104, 170, 176
GlaI GCGC 1 cut(s) 145
GluI GCNGC 7 cut(s) 108, 153, 180, 183, 186, 202, 525
GsuI CTGGAG 1 cut(s) 168
HapII CCGG 2 cut(s) 465, 594
HhaI GCGC 1 cut(s) 146
Hin1II CATG 3 cut(s) 144, 608, 638
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 4 cut(s) 158, 478, 562, 628
HpaII CCGG 2 cut(s) 465, 594
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 4 cut(s) 63, 250, 446, 497
Hpy188III TCNNGA 1 cut(s) 364
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 5 cut(s) 140, 216, 357, 542, 591
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 32, 107, 152, 179, 185, 222
HpyF3I CTNAG 5 cut(s) 18, 189, 383, 480, 654
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 3 cut(s) 144, 608, 638
HspAI GCGC 1 cut(s) 144
Kzo9I GATC 3 cut(s) 84, 470, 620
LguI GCTCTTC 1 cut(s) 594
LmnI GCTCC 2 cut(s) 149, 416
LpnPI CCDG 8 cut(s) 90, 96, 132, 183, 380, 478, 494, 607
Lsp1109I GCAGC 5 cut(s) 119, 139, 166, 172, 536
MaeI CTAG 3 cut(s) 104, 170, 176
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 3 cut(s) 227, 275, 511
MalI GATC 3 cut(s) 86, 472, 622
MbiI CCGCTC 1 cut(s) 389
MboI GATC 3 cut(s) 84, 470, 620
MboII GAAGA 4 cut(s) 212, 245, 302, 611
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 1 cut(s) 319
MlyI GAGTC 3 cut(s) 152, 472, 571
Mph1103I ATGCAT 1 cut(s) 218
MseI TTAA 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 2 cut(s) 465, 594
Mva1269I GAATGC 2 cut(s) 28, 216
MwoI GCNNNNNNNGC 7 cut(s) 23, 32, 107, 152, 179, 185, 222
NdeII GATC 3 cut(s) 84, 470, 620
NlaIII CATG 3 cut(s) 144, 608, 638
NmuCI GTSAC 1 cut(s) 275
NsiI ATGCAT 1 cut(s) 218
NspI RCATGY 2 cut(s) 144, 608
PaeI GCATGC 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 594
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 348
PctI GAATGC 2 cut(s) 28, 216
PfeI GAWTC 1 cut(s) 628
PinAI ACCGGT 1 cut(s) 593
PkrI GCNGC 7 cut(s) 109, 154, 181, 184, 187, 203, 526
PleI GAGTC 3 cut(s) 152, 472, 570
PpsI GAGTC 3 cut(s) 152, 472, 570
Psp1406I AACGTT 1 cut(s) 270
PspPI GGNCC 1 cut(s) 462
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
Rsr2I CGGWCCG 1 cut(s) 462
RsrII CGGWCCG 1 cut(s) 462
SapI GCTCTTC 1 cut(s) 594
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 7 cut(s) 108, 153, 180, 183, 186, 202, 525
Sau3AI GATC 3 cut(s) 84, 470, 620
Sau96I GGNCC 1 cut(s) 462
SchI GAGTC 3 cut(s) 152, 472, 571
SduI GDGCHC 1 cut(s) 348
SgrAI CRCCGGYG 1 cut(s) 593
SinI GGWCC 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 1 cut(s) 144
Sse9I AATT 1 cut(s) 319
SsiI CCGC 5 cut(s) 183, 201, 335, 389, 460
SspMI CTAG 3 cut(s) 104, 170, 176
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 1 cut(s) 273
TaqI TCGA 4 cut(s) 87, 351, 473, 626
TasI AATT 1 cut(s) 319
TauI GCSGC 2 cut(s) 185, 204
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 5 cut(s) 107, 152, 179, 185, 524
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 462
XagI CCTNNNNNAGG 1 cut(s) 495
XceI RCATGY 2 cut(s) 144, 608
XspI CTAG 3 cut(s) 104, 170, 176
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.