FvH4_7g29510

isoform X1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
21690483 .. 21691384
902 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29510.t1

Sequence Viewer

Length: 312 bp
ATGGCTCAGCAGAAGGTTGTCTTAAAGGTCTTGACCATGACAGATGAGAAAACAAAGCAGAAAGCCATTGAAGCCGCAGCAGATATCTTTGGGATTGATTCGATCGCGGCAGATCTGAAGGACCAGAAGCTCACAGTGGTGGGAATGATGGACACAGTTGCAGTGGTGAAGAAGCTGAAGAAGGTAGGTAAAGTCGACATAGTATCTGTTGGTCCAGCCAAGGAAGAAAAGAAAGAAGAAAAGAAGGATGAGAAAAAAGACGAAAAGAAAGAGGGCGAGAAAAAAGAAGAGAAGAAGGAAGACAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.52

Weight (kDa)

9.1

Isoelectric Point (pI)

15.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014198)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 195
AccII CGCG 1 cut(s) 107
AciI CCGC 2 cut(s) 75, 107
AcuI CTGAAG 2 cut(s) 137, 197
AgsI TTSAA 1 cut(s) 71
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 2 cut(s) 130, 175
AluI AGCT 2 cut(s) 130, 175
ApeKI GCWGC 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 121, 212
AsuHPI GGTGA 1 cut(s) 178
AvaII GGWCC 2 cut(s) 121, 212
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 142
BglII AGATCT 1 cut(s) 112
BisI GCNGC 3 cut(s) 75, 78, 108
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 3 cut(s) 76, 79, 109
Bme18I GGWCC 2 cut(s) 121, 212
BmgT120I GGNCC 2 cut(s) 121, 212
BpiI GAAGAC 1 cut(s) 306
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 105
Bsp143I GATC 2 cut(s) 102, 112
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 2 cut(s) 75, 107
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 102, 112
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 136, 157
Bst6I CTCTTC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 253
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 2 cut(s) 105, 115
BstMBI GATC 2 cut(s) 102, 112
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BtsCI GGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 141, 168
Cfr13I GGNCC 2 cut(s) 121, 212
CviAII CATG 1 cut(s) 37
CviJI RGCY 6 cut(s) 5, 65, 74, 130, 175, 218
CviKI_1 RGCY 6 cut(s) 5, 65, 74, 130, 175, 218
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 104, 114
DpnII GATC 2 cut(s) 102, 112
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 219
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 121, 212
Eco57I CTGAAG 2 cut(s) 137, 197
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 1 cut(s) 40
FaiI YATR 2 cut(s) 38, 200
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 1 cut(s) 36
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 3 cut(s) 75, 78, 108
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 75, 78, 108
GluI GCNGC 3 cut(s) 75, 78, 108
Hin1II CATG 1 cut(s) 40
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 1 cut(s) 98
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 5 cut(s) 7, 112, 175, 238, 289
HpyCH4III ACNGT 2 cut(s) 136, 157
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 40
Kzo9I GATC 2 cut(s) 102, 112
LpnPI CCDG 2 cut(s) 137, 228
Lsp1109I GCAGC 1 cut(s) 89
MalI GATC 2 cut(s) 104, 114
MboI GATC 2 cut(s) 102, 112
MboII GAAGA 7 cut(s) 181, 190, 236, 248, 299, 304, 311
MflI RGATCY 1 cut(s) 112
MnlI CCTC 1 cut(s) 265
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 137
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 2 cut(s) 102, 112
NlaIII CATG 1 cut(s) 40
OliI CACNNNNGTG 1 cut(s) 137
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 76, 79, 109
Ple19I CGATCG 1 cut(s) 105
PspPI GGNCC 2 cut(s) 121, 212
PsuI RGATCY 1 cut(s) 112
PvuI CGATCG 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 137
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 3 cut(s) 75, 78, 108
Sau3AI GATC 2 cut(s) 102, 112
Sau96I GGNCC 2 cut(s) 121, 212
SetI ASST 6 cut(s) 18, 30, 132, 177, 186, 190
SgeI CNNG 7 cut(s) 43, 49, 118, 136, 227, 232, 289
SinI GGWCC 2 cut(s) 121, 212
SmiMI CAYNNNNRTG 1 cut(s) 137
SsiI CCGC 2 cut(s) 75, 107
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 136, 157
TaqI TCGA 2 cut(s) 101, 195
TauI GCSGC 2 cut(s) 77, 110
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 141, 168
TseI GCWGC 1 cut(s) 77
TspRI CASTG 2 cut(s) 141, 168
VpaK11BI GGWCC 2 cut(s) 121, 212
XmiI GTMKAC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.