isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G23760 AT5G23760 |
| fragaria_vesca | FvH4_7g29510 FvH4_7g29510 |
| malus_domestica | MD01G1201200.v1.1 MD07G1270100.v1.1 MD07G1270400.v1.1 |
| prunus_persica | Prupe.2G294600_v2.0.a1 Prupe.2G294600_v2.0.a1 |
| pyrus_communis | pycom01g21090 |
| rosa_chinensis | RchiOBHm_Chr1g0377351 |
| rosa_laevigata | RLG00000026526 |
| rosa_multiflora | Rmu_sc0001944.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00281290 |
| rosa_rugosa | Rorug01G0402900 |
| rosa_samantha | Rh1AG420700 |
| rosa_wichuraiana | Rw1G036880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 107 |
| AciI | CCGC | 3 cut(s) | 78, 107, 110 |
| AclWI | GGATC | 3 cut(s) | 120, 146, 159 |
| AcoI | YGGCCR | 1 cut(s) | 159 |
| AcuI | CTGAAG | 1 cut(s) | 44 |
| AgsI | TTSAA | 2 cut(s) | 71, 178 |
| AluBI | AGCT | 2 cut(s) | 74, 130 |
| AluI | AGCT | 2 cut(s) | 74, 130 |
| AlwI | GGATC | 3 cut(s) | 120, 146, 159 |
| AoxI | GGCC | 1 cut(s) | 159 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| AspS9I | GGNCC | 3 cut(s) | 19, 121, 212 |
| AvaII | GGWCC | 3 cut(s) | 19, 121, 212 |
| BamHI | GGATCC | 1 cut(s) | 151 |
| BbvI | GCAGC | 1 cut(s) | 61 |
| BccI | CCATC | 2 cut(s) | 142, 266 |
| BceAI | ACGGC | 1 cut(s) | 146 |
| BisI | GCNGC | 3 cut(s) | 75, 78, 108 |
| BlpI | GCTNAGC | 1 cut(s) | 6 |
| BlsI | GCNGC | 3 cut(s) | 76, 79, 109 |
| Bme18I | GGWCC | 3 cut(s) | 19, 121, 212 |
| BmgT120I | GGNCC | 3 cut(s) | 19, 121, 212 |
| BmiI | GGNNCC | 1 cut(s) | 153 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 6 |
| BsaJI | CCNNGG | 1 cut(s) | 219 |
| BsaWI | WCCGGW | 1 cut(s) | 154 |
| BseDI | CCNNGG | 1 cut(s) | 219 |
| BseMII | CTCAG | 1 cut(s) | 20 |
| BseXI | GCAGC | 1 cut(s) | 61 |
| Bsh1236I | CGCG | 1 cut(s) | 107 |
| Bsh1285I | CGRYCG | 1 cut(s) | 105 |
| BshFI | GGCC | 1 cut(s) | 161 |
| BsiEI | CGRYCG | 1 cut(s) | 105 |
| BsiSI | CCGG | 1 cut(s) | 155 |
| BsnI | GGCC | 1 cut(s) | 161 |
| Bsp143I | GATC | 3 cut(s) | 102, 112, 151 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 6 |
| BspACI | CCGC | 3 cut(s) | 78, 107, 110 |
| BspANI | GGCC | 1 cut(s) | 161 |
| BspCNI | CTCAG | 1 cut(s) | 19 |
| BspFNI | CGCG | 1 cut(s) | 107 |
| BspLI | GGNNCC | 1 cut(s) | 153 |
| BspPI | GGATC | 3 cut(s) | 120, 146, 159 |
| BssECI | CCNNGG | 1 cut(s) | 219 |
| BssMI | GATC | 3 cut(s) | 102, 112, 151 |
| BssT1I | CCWWGG | 1 cut(s) | 219 |
| Bst4CI | ACNGT | 1 cut(s) | 136 |
| Bst6I | CTCTTC | 2 cut(s) | 219, 231 |
| BstDEI | CTNAG | 1 cut(s) | 6 |
| BstFNI | CGCG | 1 cut(s) | 107 |
| BstKTI | GATC | 3 cut(s) | 105, 115, 154 |
| BstMBI | GATC | 3 cut(s) | 102, 112, 151 |
| BstMCI | CGRYCG | 1 cut(s) | 105 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 71 |
| BstUI | CGCG | 1 cut(s) | 107 |
| BstV1I | GCAGC | 1 cut(s) | 61 |
| BstX2I | RGATCY | 2 cut(s) | 112, 151 |
| BstYI | RGATCY | 2 cut(s) | 112, 151 |
| BsuRI | GGCC | 1 cut(s) | 161 |
| BtsIMutI | CAGTG | 1 cut(s) | 141 |
| Cfr13I | GGNCC | 3 cut(s) | 19, 121, 212 |
| CviAII | CATG | 1 cut(s) | 37 |
| CviJI | RGCY | 6 cut(s) | 5, 65, 74, 130, 161, 218 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 65, 74, 130, 161, 218 |
| DdeI | CTNAG | 1 cut(s) | 6 |
| DpnI | GATC | 3 cut(s) | 104, 114, 153 |
| DpnII | GATC | 3 cut(s) | 102, 112, 151 |
| EaeI | YGGCCR | 1 cut(s) | 159 |
| Eam1104I | CTCTTC | 2 cut(s) | 219, 231 |
| EarI | CTCTTC | 2 cut(s) | 219, 231 |
| EciI | GGCGGA | 1 cut(s) | 125 |
| Eco130I | CCWWGG | 1 cut(s) | 219 |
| Eco47I | GGWCC | 3 cut(s) | 19, 121, 212 |
| Eco57I | CTGAAG | 1 cut(s) | 44 |
| EcoT14I | CCWWGG | 1 cut(s) | 219 |
| ErhI | CCWWGG | 1 cut(s) | 219 |
| FaeI | CATG | 1 cut(s) | 40 |
| FaiI | YATR | 2 cut(s) | 38, 200 |
| FatI | CATG | 1 cut(s) | 36 |
| Fnu4HI | GCNGC | 3 cut(s) | 75, 78, 108 |
| Fsp4HI | GCNGC | 3 cut(s) | 75, 78, 108 |
| GluI | GCNGC | 3 cut(s) | 75, 78, 108 |
| HaeIII | GGCC | 1 cut(s) | 161 |
| HapII | CCGG | 1 cut(s) | 155 |
| Hin1II | CATG | 1 cut(s) | 40 |
| HinfI | GANTC | 1 cut(s) | 98 |
| HpaII | CCGG | 1 cut(s) | 155 |
| Hpy166II | GTNNAC | 1 cut(s) | 196 |
| Hpy188I | TCNGA | 2 cut(s) | 33, 212 |
| Hpy188III | TCNNGA | 1 cut(s) | 22 |
| Hpy8I | GTNNAC | 1 cut(s) | 196 |
| HpyAV | CCTTC | 4 cut(s) | 7, 19, 175, 295 |
| HpyCH4III | ACNGT | 1 cut(s) | 136 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 71 |
| HpyF3I | CTNAG | 1 cut(s) | 6 |
| Hsp92II | CATG | 1 cut(s) | 40 |
| Kzo9I | GATC | 3 cut(s) | 102, 112, 151 |
| LpnPI | CCDG | 4 cut(s) | 35, 137, 168, 228 |
| Lsp1109I | GCAGC | 1 cut(s) | 61 |
| MalI | GATC | 3 cut(s) | 104, 114, 153 |
| MboI | GATC | 3 cut(s) | 102, 112, 151 |
| MboII | GAAGA | 8 cut(s) | 181, 190, 236, 241, 248, 253, 260, 305 |
| MflI | RGATCY | 2 cut(s) | 112, 151 |
| MnlI | CCTC | 2 cut(s) | 274, 298 |
| MspA1I | CMGCKG | 1 cut(s) | 80 |
| MspI | CCGG | 1 cut(s) | 155 |
| MvnI | CGCG | 1 cut(s) | 107 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 71 |
| NdeII | GATC | 3 cut(s) | 102, 112, 151 |
| NlaIII | CATG | 1 cut(s) | 40 |
| NlaIV | GGNNCC | 1 cut(s) | 153 |
| PfeI | GAWTC | 1 cut(s) | 98 |
| PkrI | GCNGC | 3 cut(s) | 76, 79, 109 |
| Ple19I | CGATCG | 1 cut(s) | 105 |
| PspN4I | GGNNCC | 1 cut(s) | 153 |
| PspPI | GGNCC | 3 cut(s) | 19, 121, 212 |
| PsuI | RGATCY | 2 cut(s) | 112, 151 |
| PvuI | CGATCG | 1 cut(s) | 105 |
| SatI | GCNGC | 3 cut(s) | 75, 78, 108 |
| Sau3AI | GATC | 3 cut(s) | 102, 112, 151 |
| Sau96I | GGNCC | 3 cut(s) | 19, 121, 212 |
| SetI | ASST | 6 cut(s) | 18, 30, 76, 132, 186, 195 |
| SgeI | CNNG | 8 cut(s) | 34, 49, 118, 136, 167, 227, 232, 277 |
| SinI | GGWCC | 3 cut(s) | 19, 121, 212 |
| SsiI | CCGC | 3 cut(s) | 78, 107, 110 |
| StyI | CCWWGG | 1 cut(s) | 219 |
| TaaI | ACNGT | 1 cut(s) | 136 |
| TaqI | TCGA | 1 cut(s) | 101 |
| TaqII | GACCGA | 1 cut(s) | 56 |
| TauI | GCSGC | 2 cut(s) | 80, 110 |
| TfiI | GAWTC | 1 cut(s) | 98 |
| TscAI | CASTG | 1 cut(s) | 141 |
| TseI | GCWGC | 1 cut(s) | 74 |
| TspRI | CASTG | 1 cut(s) | 141 |
| VpaK11BI | GGWCC | 3 cut(s) | 19, 121, 212 |