Prupe.2G294600_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014198
Physical Location & Seq
Reverse (-)
28624032 .. 28625417
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G294600.2

Sequence Viewer

Length: 309 bp
ATGGCTCAGCAGAAGGTGGTCCTCAAGGTCATGACTATGACTGATGACAAAACAAAGCAGAAAGCCATTGAAGCGGCCGCTGATATATTTGGGATTGATTCAATAGCAGCAGATCTAAAGGACCAAAAGCTAACCGTGGTAGGGATGATGGATCCAGTGGCAGTGGTGAAGAAGTTAAAGAAGGTAGGGAAAGTGGACATAATATCAGTTGGCCCAGCCAAGGAAGAGAAAAAGGAAGAGAAGAAAGAGGAGAAAAAAGAGGAAAAGAAAGAAGAGAAAAAGGAGGAGAAGAAGGAGGAGAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

103

Amino Acids

11.51

Weight (kDa)

9.1

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23760 AT5G23760
fragaria_vesca FvH4_7g29510 FvH4_7g29510
malus_domestica MD01G1201200.v1.1 MD07G1270100.v1.1 MD07G1270400.v1.1
prunus_persica Prupe.2G294600_v2.0.a1 Prupe.2G294600_v2.0.a1
pyrus_communis pycom01g21090
rosa_chinensis RchiOBHm_Chr1g0377351
rosa_laevigata RLG00000026526
rosa_multiflora Rmu_sc0001944.1_g000007
rosa_roxburghii Rroxscaffold_4G00281290
rosa_rugosa Rorug01G0402900
rosa_samantha Rh1AG420700
rosa_wichuraiana Rw1G036880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 74, 78
AclWI GGATC 2 cut(s) 146, 159
AcoI YGGCCR 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 141, 220
AgsI TTSAA 2 cut(s) 71, 102
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
AlwI GGATC 2 cut(s) 146, 159
AoxI GGCC 2 cut(s) 75, 211
ApeKI GCWGC 1 cut(s) 107
AspS9I GGNCC 3 cut(s) 19, 121, 212
AsuHPI GGTGA 1 cut(s) 178
AvaII GGWCC 2 cut(s) 19, 121
BamHI GGATCC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 142
BglII AGATCT 1 cut(s) 112
BisI GCNGC 3 cut(s) 75, 78, 108
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 3 cut(s) 76, 79, 109
Bme18I GGWCC 2 cut(s) 19, 121
BmgT120I GGNCC 3 cut(s) 19, 121, 212
BmiI GGNNCC 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 135, 219
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 220
Bse1I ACTGG 1 cut(s) 155
BseDI CCNNGG 2 cut(s) 135, 219
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 141, 220
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 2 cut(s) 263, 299
BseX3I CGGCCG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 214
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 77, 213
BsiEI CGRYCG 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 141, 220
BsnI GGCC 2 cut(s) 77, 213
Bsp143I GATC 2 cut(s) 112, 151
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 2 cut(s) 74, 78
BspANI GGCC 2 cut(s) 77, 213
BspCNI CTCAG 1 cut(s) 19
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 2 cut(s) 146, 159
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 135, 219
BssMI GATC 2 cut(s) 112, 151
BssT1I CCWWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 3 cut(s) 219, 231, 267
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 150
BstKTI GATC 2 cut(s) 115, 154
BstMBI GATC 2 cut(s) 112, 151
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 2 cut(s) 112, 151
BstYI RGATCY 2 cut(s) 112, 151
BstZI CGGCCG 1 cut(s) 75
BsuRI GGCC 2 cut(s) 77, 213
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 150
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 162, 168
CciI TCATGA 1 cut(s) 30
CciNI GCGGCCGC 1 cut(s) 75
Cfr13I GGNCC 3 cut(s) 19, 121, 212
CviAII CATG 1 cut(s) 31
CviJI RGCY 6 cut(s) 5, 65, 77, 130, 213, 218
CviKI_1 RGCY 6 cut(s) 5, 65, 77, 130, 213, 218
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 114, 153
DpnII GATC 2 cut(s) 112, 151
EaeI YGGCCR 1 cut(s) 75
EagI CGGCCG 1 cut(s) 75
Eam1104I CTCTTC 3 cut(s) 219, 231, 267
EarI CTCTTC 3 cut(s) 219, 231, 267
EclXI CGGCCG 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 19, 121
Eco52I CGGCCG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 1 cut(s) 34
FaiI YATR 4 cut(s) 32, 38, 86, 200
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 75, 78, 108
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 3 cut(s) 75, 78, 108
GluI GCNGC 3 cut(s) 75, 78, 108
GsaI CCCAGC 1 cut(s) 218
HaeIII GGCC 2 cut(s) 77, 213
Hin1II CATG 1 cut(s) 34
HinfI GANTC 1 cut(s) 98
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 3 cut(s) 7, 175, 286
HpyCH4III ACNGT 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 34
Kzo9I GATC 2 cut(s) 112, 151
LpnPI CCDG 2 cut(s) 168, 228
Lsp1109I GCAGC 1 cut(s) 119
MalI GATC 2 cut(s) 114, 153
MboI GATC 2 cut(s) 112, 151
MboII GAAGA 6 cut(s) 181, 236, 248, 253, 284, 301
MflI RGATCY 2 cut(s) 112, 151
MnlI CCTC 5 cut(s) 32, 241, 253, 277, 289
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 2 cut(s) 112, 151
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 153
NotI GCGGCCGC 1 cut(s) 75
PagI TCATGA 1 cut(s) 30
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 76, 79, 109
PspFI CCCAGC 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 3 cut(s) 19, 121, 212
PsuI RGATCY 2 cut(s) 112, 151
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 3 cut(s) 75, 78, 108
Sau3AI GATC 2 cut(s) 112, 151
Sau96I GGNCC 3 cut(s) 19, 121, 212
SetI ASST 4 cut(s) 18, 30, 132, 186
SgeI CNNG 6 cut(s) 37, 43, 148, 167, 227, 232
SinI GGWCC 2 cut(s) 19, 121
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SsiI CCGC 2 cut(s) 74, 78
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 136
TauI GCSGC 2 cut(s) 77, 80
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 162, 168
TseI GCWGC 1 cut(s) 107
TspRI CASTG 2 cut(s) 162, 168
VpaK11BI GGWCC 2 cut(s) 19, 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.